Wall clock time and date at job start Tue Mar 31 2020 14:19:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1
5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1
6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2
7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2
8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3
9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3
10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5
11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5
12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5
13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1
14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2
15 15 O 1.21564 * 120.00112 * 359.97438 * 14 13 3
16 16 C 1.47796 * 120.00039 * 179.97438 * 14 13 3
17 17 C 1.39616 * 120.14842 * 359.72171 * 16 14 13
18 18 C 1.37904 * 119.85664 * 179.76601 * 17 16 14
19 19 C 1.38412 * 120.17661 * 0.50927 * 18 17 16
20 20 C 1.50698 * 119.84792 * 179.76215 * 19 18 17
21 21 C 1.38281 * 120.31099 * 359.74677 * 19 18 17
22 22 C 1.38115 * 120.13246 * 359.97438 * 21 19 18
23 23 Br 1.89104 * 120.08944 * 179.97438 * 22 21 19
24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3
28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
29 29 H 0.97005 * 119.99936 * 179.97438 * 8 7 5
30 30 H 0.96998 * 120.00208 * 264.99507 * 13 3 2
31 31 H 1.07993 * 120.06910 * 0.02562 * 17 16 14
32 32 H 1.08002 * 119.91140 * 180.23568 * 18 17 16
33 33 H 1.09002 * 109.47531 * 269.98694 * 20 19 18
34 34 H 1.09003 * 109.46868 * 29.98085 * 20 19 18
35 35 H 1.08999 * 109.47490 * 149.98253 * 20 19 18
36 36 H 1.08002 * 119.93677 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8419
5 6 3.5419 1.4443 0.1238
6 1 4.1472 1.8889 -0.6523
7 6 4.1433 0.8783 1.2279
8 7 5.4539 0.8804 1.3362
9 14 3.0964 0.1099 2.5706
10 1 2.8747 -1.3262 2.2643
11 1 3.7942 0.2357 3.8754
12 1 1.7881 0.8091 2.6394
13 7 1.6524 2.0975 -1.2518
14 6 0.4351 2.6644 -1.3669
15 8 -0.3414 2.6318 -0.4321
16 6 0.0443 3.3257 -2.6295
17 6 0.9358 3.3701 -3.7030
18 6 0.5631 3.9844 -4.8801
19 6 -0.6877 4.5658 -4.9957
20 6 -1.0853 5.2399 -6.2835
21 6 -1.5743 4.5307 -3.9351
22 6 -1.2165 3.9138 -2.7524
23 35 -2.4297 3.8672 -1.3026
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 -0.8900
27 1 1.8934 -0.5138 0.8899
28 1 1.8933 -0.5138 -0.8900
29 1 5.8770 0.4826 2.1132
30 1 2.2718 2.1232 -1.9978
31 1 1.9136 2.9205 -3.6133
32 1 1.2506 4.0159 -5.7124
33 1 -0.8003 6.2914 -6.2464
34 1 -0.5788 4.7556 -7.1185
35 1 -2.1641 5.1603 -6.4174
36 1 -2.5489 4.9859 -4.0321
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000163672838.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:19:27
Heat of formation + Delta-G solvation = -0.472483 kcal
Electronic energy + Delta-G solvation = -19696.265568 eV
Core-core repulsion = 16613.028546 eV
Total energy + Delta-G solvation = -3083.237022 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.05909 -38.42176 -35.35186 -33.25072 -32.62952 -32.00421 -31.12659 -29.26591
-27.99131 -26.98403 -22.95032 -22.74680 -22.14000 -20.59150 -19.59665 -18.04383
-16.38844 -16.02346 -15.36501 -15.18512 -14.74127 -14.68437 -14.12926 -13.93637
-13.63096 -13.30263 -12.96572 -12.65778 -12.55763 -12.16616 -11.85554 -11.79098
-11.71013 -11.22468 -11.07174 -10.91177 -10.66288 -10.59562 -10.39415 -9.90867
-9.45693 -9.21903 -8.94990 -8.75973 -8.67297 -8.46392 -8.01043 -6.20813
-4.23256 0.74611 1.07388 1.80004 3.07772 3.24567 3.36585 3.42148
3.86426 3.94293 4.32432 4.55325 4.60470 4.90438 4.99203 5.13265
5.18092 5.31430 5.34099 5.46607 5.63253 5.78988 5.99872 6.04174
6.06014 6.07247 6.22126 6.27288 6.60811 6.69356 6.73536 6.86888
7.00258 7.28059 7.31561 7.52233 8.14882 8.51755 8.75755 8.92695
9.40170 10.91222
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.018632 B = 0.004664 C = 0.003942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1502.463965 B = 6001.981132 C = 7101.597115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.138 4.138
3 C 0.244 3.756
4 H 0.051 0.949
5 C -0.535 4.535
6 H 0.079 0.921
7 C 0.079 3.921
8 N -0.892 5.892
9 Si 0.883 3.117
10 H -0.276 1.276
11 H -0.295 1.295
12 H -0.259 1.259
13 N -0.693 5.693
14 C 0.533 3.467
15 O -0.516 6.516
16 C -0.107 4.107
17 C -0.078 4.078
18 C -0.116 4.116
19 C -0.068 4.068
20 C -0.115 4.115
21 C -0.105 4.105
22 C -0.042 4.042
23 Br -0.014 7.014
24 H 0.053 0.947
25 H 0.030 0.970
26 H 0.053 0.947
27 H 0.054 0.946
28 H 0.057 0.943
29 H 0.267 0.733
30 H 0.392 0.608
31 H 0.138 0.862
32 H 0.132 0.868
33 H 0.074 0.926
34 H 0.070 0.930
35 H 0.069 0.931
36 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.499 7.276 -14.037 21.452
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.176 4.176
3 C 0.141 3.859
4 H 0.069 0.931
5 C -0.573 4.573
6 H 0.097 0.903
7 C -0.124 4.124
8 N -0.529 5.529
9 Si 0.712 3.288
10 H -0.203 1.203
11 H -0.222 1.222
12 H -0.184 1.184
13 N -0.342 5.342
14 C 0.318 3.682
15 O -0.394 6.394
16 C -0.112 4.112
17 C -0.097 4.097
18 C -0.135 4.135
19 C -0.069 4.069
20 C -0.172 4.172
21 C -0.125 4.125
22 C -0.123 4.123
23 Br 0.073 6.927
24 H 0.072 0.928
25 H 0.049 0.951
26 H 0.072 0.928
27 H 0.072 0.928
28 H 0.076 0.924
29 H 0.077 0.923
30 H 0.226 0.774
31 H 0.155 0.845
32 H 0.150 0.850
33 H 0.093 0.907
34 H 0.089 0.911
35 H 0.087 0.913
36 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -15.338 7.166 -12.653 21.135
hybrid contribution 0.338 -0.527 0.030 0.627
sum -15.000 6.638 -12.623 20.698
Atomic orbital electron populations
1.21875 0.96797 0.99000 1.02416 1.22281 0.94466 0.99861 1.01038
1.19167 0.95597 0.88496 0.82658 0.93080 1.21041 0.88596 1.39809
1.07871 0.90255 1.24818 0.94851 0.95112 0.97645 1.69865 1.08702
1.44525 1.29827 0.86909 0.81037 0.79962 0.80877 1.20250 1.22203
1.18353 1.46130 1.14469 1.55635 1.17998 1.18085 0.83189 0.79896
0.87075 1.90921 1.50240 1.58767 1.39423 1.20083 0.93955 1.01040
0.96131 1.21415 0.99055 0.97257 0.91998 1.21094 0.96088 0.98314
0.97966 1.20051 0.93831 0.97301 0.95693 1.20832 1.02162 1.00451
0.93729 1.20940 1.00318 0.99906 0.91347 1.21972 0.94672 1.01079
0.94623 1.96757 1.55080 1.97407 1.43476 0.92757 0.95089 0.92837
0.92792 0.92384 0.92292 0.77418 0.84470 0.84995 0.90707 0.91101
0.91250 0.84820
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16
2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.20 16
3 C 0.24 5.75 1.83 -69.08 -0.13 5.62 16
4 H 0.05 1.33 6.63 -51.93 -0.34 0.99 16
5 C -0.54 -14.34 9.31 -34.44 -0.32 -14.67 16
6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16
7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16
8 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16
9 Si 0.88 21.78 24.41 -169.99 -4.15 17.63 16
10 H -0.28 -6.60 6.83 56.52 0.39 -6.21 16
11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
12 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16
13 N -0.69 -13.73 4.97 -55.89 -0.28 -14.01 16
14 C 0.53 10.19 6.33 -12.35 -0.08 10.11 16
15 O -0.52 -11.01 10.61 5.31 0.06 -10.95 16
16 C -0.11 -1.68 5.88 -104.94 -0.62 -2.29 16
17 C -0.08 -0.98 9.54 -39.19 -0.37 -1.36 16
18 C -0.12 -1.19 9.68 -39.64 -0.38 -1.58 16
19 C -0.07 -0.67 5.88 -104.54 -0.62 -1.28 16
20 C -0.12 -0.75 10.00 36.00 0.36 -0.39 16
21 C -0.11 -1.21 9.42 -39.61 -0.37 -1.58 16
22 C -0.04 -0.62 6.26 -39.10 -0.24 -0.87 16
23 Br -0.01 -0.22 30.40 -68.01 -2.07 -2.28 16
24 H 0.05 1.16 7.84 -51.93 -0.41 0.76 16
25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
26 H 0.05 1.08 5.64 -51.93 -0.29 0.78 16
27 H 0.05 1.26 3.22 -51.93 -0.17 1.10 16
28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16
30 H 0.39 6.83 6.57 -40.82 -0.27 6.57 16
31 H 0.14 1.55 6.41 -52.49 -0.34 1.22 16
32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16
33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16
35 H 0.07 0.39 8.08 -51.93 -0.42 -0.02 16
36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16
LS Contribution 307.33 15.07 4.63 4.63
Total: -1.00 -30.88 307.33 -8.09 -38.98
By element:
Atomic # 1 Polarization: 7.92 SS G_CDS: -4.37 Total: 3.55 kcal
Atomic # 6 Polarization: -9.28 SS G_CDS: -2.69 Total: -11.96 kcal
Atomic # 7 Polarization: -40.08 SS G_CDS: 0.50 Total: -39.58 kcal
Atomic # 8 Polarization: -11.01 SS G_CDS: 0.06 Total: -10.95 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -4.15 Total: 17.63 kcal
Atomic # 35 Polarization: -0.22 SS G_CDS: -2.07 Total: -2.28 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -30.88 -8.09 -38.98 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000163672838.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.504 kcal
(2) G-P(sol) polarization free energy of solvation -30.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.622 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.472 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds