Wall clock time and date at job start Tue Mar 31 2020 14:19:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1
5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1
6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2
7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2
8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3
9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3
10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5
11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5
12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5
13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1
14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2
15 15 O 1.21564 * 120.00112 * 359.97438 * 14 13 3
16 16 C 1.47796 * 120.00039 * 179.97438 * 14 13 3
17 17 C 1.39616 * 120.14842 * 359.72171 * 16 14 13
18 18 C 1.37904 * 119.85664 * 179.76601 * 17 16 14
19 19 C 1.38412 * 120.17661 * 0.50927 * 18 17 16
20 20 C 1.50698 * 119.84792 * 179.76215 * 19 18 17
21 21 C 1.38281 * 120.31099 * 359.74677 * 19 18 17
22 22 C 1.38115 * 120.13246 * 359.97438 * 21 19 18
23 23 Br 1.89104 * 120.08944 * 179.97438 * 22 21 19
24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3
28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
29 29 H 0.97005 * 119.99936 * 179.97438 * 8 7 5
30 30 H 0.96998 * 120.00208 * 264.99507 * 13 3 2
31 31 H 1.07993 * 120.06910 * 0.02562 * 17 16 14
32 32 H 1.08002 * 119.91140 * 180.23568 * 18 17 16
33 33 H 1.09002 * 109.47531 * 269.98694 * 20 19 18
34 34 H 1.09003 * 109.46868 * 29.98085 * 20 19 18
35 35 H 1.08999 * 109.47490 * 149.98253 * 20 19 18
36 36 H 1.08002 * 119.93677 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8419
5 6 3.5419 1.4443 0.1238
6 1 4.1472 1.8889 -0.6523
7 6 4.1433 0.8783 1.2279
8 7 5.4539 0.8804 1.3362
9 14 3.0964 0.1099 2.5706
10 1 2.8747 -1.3262 2.2643
11 1 3.7942 0.2357 3.8754
12 1 1.7881 0.8091 2.6394
13 7 1.6524 2.0975 -1.2518
14 6 0.4351 2.6644 -1.3669
15 8 -0.3414 2.6318 -0.4321
16 6 0.0443 3.3257 -2.6295
17 6 0.9358 3.3701 -3.7030
18 6 0.5631 3.9844 -4.8801
19 6 -0.6877 4.5658 -4.9957
20 6 -1.0853 5.2399 -6.2835
21 6 -1.5743 4.5307 -3.9351
22 6 -1.2165 3.9138 -2.7524
23 35 -2.4297 3.8672 -1.3026
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 -0.8900
27 1 1.8934 -0.5138 0.8899
28 1 1.8933 -0.5138 -0.8900
29 1 5.8770 0.4826 2.1132
30 1 2.2718 2.1232 -1.9978
31 1 1.9136 2.9205 -3.6133
32 1 1.2506 4.0159 -5.7124
33 1 -0.8003 6.2914 -6.2464
34 1 -0.5788 4.7556 -7.1185
35 1 -2.1641 5.1603 -6.4174
36 1 -2.5489 4.9859 -4.0321
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000163672838.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:19:26
Heat of formation + Delta-G solvation = -19.805261 kcal
Electronic energy + Delta-G solvation = -19697.103900 eV
Core-core repulsion = 16613.028546 eV
Total energy + Delta-G solvation = -3084.075354 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.30136 -39.66013 -37.08496 -34.52533 -34.14963 -33.49692 -32.46424 -30.27540
-29.57935 -28.16955 -24.72293 -23.75198 -23.42453 -21.97732 -21.17060 -19.56983
-18.17868 -17.54517 -16.78804 -16.27420 -16.09373 -16.00129 -15.55731 -15.12053
-14.73209 -14.61232 -14.50655 -14.07026 -13.76391 -13.66030 -13.18481 -13.06494
-12.90663 -12.78778 -12.62536 -12.38973 -12.08717 -11.85220 -11.74758 -11.67430
-11.29652 -11.22583 -10.85287 -9.91140 -9.86197 -9.78447 -9.54784 -8.38103
-6.43176 -0.28229 0.15557 0.73195 1.26777 1.35221 1.45250 1.93214
2.26127 2.41450 2.74203 2.98361 3.67157 3.73774 3.94115 4.21729
4.22820 4.26929 4.33142 4.39145 4.48867 4.67597 4.85572 4.87681
4.89660 5.00951 5.06638 5.14313 5.17799 5.25023 5.26105 5.41716
5.46075 5.52939 5.66443 5.78440 6.15161 6.58105 6.87463 7.19850
7.45172 8.77023
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.018632 B = 0.004664 C = 0.003942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1502.463965 B = 6001.981132 C = 7101.597115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.136 4.136
3 C 0.253 3.747
4 H 0.024 0.976
5 C -0.532 4.532
6 H 0.057 0.943
7 C 0.032 3.968
8 N -0.933 5.933
9 Si 0.934 3.066
10 H -0.260 1.260
11 H -0.294 1.294
12 H -0.261 1.261
13 N -0.696 5.696
14 C 0.532 3.468
15 O -0.544 6.544
16 C -0.138 4.138
17 C -0.080 4.080
18 C -0.110 4.110
19 C -0.053 4.053
20 C -0.115 4.115
21 C -0.107 4.107
22 C -0.057 4.057
23 Br -0.035 7.035
24 H 0.038 0.962
25 H 0.056 0.944
26 H 0.052 0.948
27 H 0.044 0.956
28 H 0.067 0.933
29 H 0.270 0.730
30 H 0.402 0.598
31 H 0.145 0.855
32 H 0.167 0.833
33 H 0.088 0.912
34 H 0.088 0.912
35 H 0.080 0.920
36 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.738 7.565 -16.524 24.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.174 4.174
3 C 0.148 3.852
4 H 0.041 0.959
5 C -0.571 4.571
6 H 0.075 0.925
7 C -0.168 4.168
8 N -0.572 5.572
9 Si 0.762 3.238
10 H -0.185 1.185
11 H -0.221 1.221
12 H -0.186 1.186
13 N -0.346 5.346
14 C 0.319 3.681
15 O -0.423 6.423
16 C -0.143 4.143
17 C -0.099 4.099
18 C -0.128 4.128
19 C -0.054 4.054
20 C -0.171 4.171
21 C -0.127 4.127
22 C -0.138 4.138
23 Br 0.051 6.949
24 H 0.057 0.943
25 H 0.075 0.925
26 H 0.071 0.929
27 H 0.062 0.938
28 H 0.086 0.914
29 H 0.079 0.921
30 H 0.238 0.762
31 H 0.162 0.838
32 H 0.185 0.815
33 H 0.106 0.894
34 H 0.107 0.893
35 H 0.099 0.901
36 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -16.587 7.460 -15.176 23.687
hybrid contribution 0.731 -0.493 0.626 1.081
sum -15.856 6.967 -14.550 22.620
Atomic orbital electron populations
1.21741 0.95206 1.00357 1.01617 1.22192 0.95794 0.98461 1.00941
1.18775 0.93199 0.89574 0.83635 0.95853 1.21277 0.90283 1.38513
1.06984 0.92501 1.25499 0.95679 0.95850 0.99735 1.69968 1.10212
1.46174 1.30840 0.86067 0.79360 0.79980 0.78414 1.18550 1.22126
1.18550 1.45937 1.15418 1.56127 1.17090 1.18607 0.82251 0.79130
0.88153 1.90897 1.50846 1.59699 1.40857 1.19846 0.95507 1.03520
0.95459 1.21589 0.98858 0.97379 0.92082 1.21503 0.96794 0.96745
0.97796 1.20530 0.93009 0.95472 0.96392 1.20948 1.03232 1.00879
0.92041 1.21239 1.01620 0.99277 0.90542 1.22116 0.94127 1.02344
0.95175 1.96720 1.55656 1.97521 1.44961 0.94325 0.92537 0.92895
0.93808 0.91420 0.92093 0.76225 0.83758 0.81548 0.89352 0.89326
0.90083 0.82831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.25 8.51 71.98 0.61 -4.63 16
2 C -0.14 -5.93 5.11 30.59 0.16 -5.77 16
3 C 0.25 12.06 1.83 44.24 0.08 12.14 16
4 H 0.02 1.26 6.63 -2.38 -0.02 1.24 16
5 C -0.53 -29.12 9.31 25.60 0.24 -28.88 16
6 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16
7 C 0.03 1.82 5.45 84.66 0.46 2.29 16
8 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16
9 Si 0.93 45.27 24.41 68.60 1.67 46.94 16
10 H -0.26 -11.84 6.83 99.48 0.68 -11.16 16
11 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16
12 H -0.26 -12.63 6.53 99.48 0.65 -11.98 16
13 N -0.70 -27.82 4.97 -449.01 -2.23 -30.05 16
14 C 0.53 20.49 6.33 86.77 0.55 21.04 16
15 O -0.54 -23.64 10.61 -3.92 -0.04 -23.68 16
16 C -0.14 -4.25 5.88 -20.07 -0.12 -4.36 16
17 C -0.08 -1.87 9.54 22.52 0.21 -1.65 16
18 C -0.11 -1.86 9.68 22.23 0.22 -1.65 16
19 C -0.05 -0.84 5.88 -19.81 -0.12 -0.96 16
20 C -0.11 -0.94 10.00 71.24 0.71 -0.23 16
21 C -0.11 -2.19 9.42 22.25 0.21 -1.98 16
22 C -0.06 -1.60 6.26 22.58 0.14 -1.46 16
23 Br -0.04 -1.09 30.40 -20.37 -0.62 -1.71 16
24 H 0.04 1.63 7.84 -2.39 -0.02 1.62 16
25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
26 H 0.05 2.10 5.64 -2.38 -0.01 2.08 16
27 H 0.04 2.00 3.22 -2.39 -0.01 2.00 16
28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16
29 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16
30 H 0.40 14.11 6.57 -92.71 -0.61 13.50 16
31 H 0.14 3.06 6.41 -2.91 -0.02 3.04 16
32 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16
33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16
34 H 0.09 0.49 8.08 -2.39 -0.02 0.47 16
35 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16
36 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16
Total: -1.00 -68.23 307.33 2.85 -65.38
By element:
Atomic # 1 Polarization: 14.62 SS G_CDS: 0.41 Total: 15.04 kcal
Atomic # 6 Polarization: -19.48 SS G_CDS: 3.36 Total: -16.12 kcal
Atomic # 7 Polarization: -83.91 SS G_CDS: -1.93 Total: -85.84 kcal
Atomic # 8 Polarization: -23.64 SS G_CDS: -0.04 Total: -23.68 kcal
Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal
Atomic # 35 Polarization: -1.09 SS G_CDS: -0.62 Total: -1.71 kcal
Total: -68.23 2.85 -65.38 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000163672838.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.576 kcal
(2) G-P(sol) polarization free energy of solvation -68.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds