Wall clock time and date at job start Tue Mar 31 2020 15:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37939 * 119.99927 * 167.48472 * 3 2 1 5 5 C 1.46342 * 119.99518 * 7.52834 * 4 3 2 6 6 C 1.40325 * 120.12611 * 34.07656 * 5 4 3 7 7 C 1.36528 * 119.87268 * 179.97438 * 6 5 4 8 8 C 1.39290 * 120.12334 * 359.97438 * 7 6 5 9 9 O 1.35499 * 119.87318 * 180.02562 * 8 7 6 10 10 C 1.34736 * 116.99778 * 352.38453 * 9 8 7 11 11 H 1.08000 * 120.00749 * 5.42890 * 10 9 8 12 12 C 1.38790 * 120.00123 * 185.43595 * 10 9 8 13 13 N 1.31462 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00528 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47011 * 59.99422 * 14 12 10 16 16 H 1.48492 * 109.47352 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46829 * 299.99990 * 14 12 10 18 18 C 1.39281 * 120.25419 * 0.02562 * 8 7 6 19 19 C 1.36531 * 120.12529 * 0.04519 * 18 8 7 20 20 C 1.47105 * 120.00319 * 347.48422 * 3 2 1 21 21 O 1.21755 * 119.99801 * 173.79096 * 20 3 2 22 22 C 1.47209 * 119.99852 * 353.78954 * 20 3 2 23 23 C 1.44438 * 123.47450 * 335.14860 * 22 20 3 24 24 C 1.32756 * 113.09192 * 179.80914 * 23 22 20 25 25 S 1.75506 * 110.60004 * 0.44498 * 24 23 22 26 26 C 1.36127 * 123.47317 * 155.44635 * 22 20 3 27 27 H 1.07996 * 120.00455 * 187.53004 * 4 3 2 28 28 H 1.07991 * 120.06416 * 0.25037 * 6 5 4 29 29 H 1.08002 * 119.93911 * 179.97438 * 7 6 5 30 30 H 0.97001 * 120.00281 * 180.02562 * 13 12 10 31 31 H 1.07997 * 119.93856 * 180.02562 * 18 8 7 32 32 H 1.07998 * 120.06365 * 179.97438 * 19 18 8 33 33 H 1.08000 * 123.44738 * 359.97438 * 23 22 20 34 34 H 1.07999 * 124.70147 * 180.18136 * 24 23 22 35 35 H 1.08003 * 124.60173 * 0.02562 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2572 1.1672 -0.2589 5 6 2.5342 2.4347 -0.3702 6 6 1.3968 2.6683 0.4177 7 6 0.7266 3.8529 0.3101 8 6 1.1702 4.8287 -0.5794 9 8 0.5015 6.0027 -0.6818 10 6 -0.6665 6.1013 -0.0174 11 1 -0.9873 5.3008 0.6327 12 6 -1.4577 7.2315 -0.1687 13 7 -1.0672 8.2061 -0.9598 14 14 -3.0767 7.3686 0.7529 15 1 -2.8216 7.3021 2.2143 16 1 -3.7263 8.6623 0.4226 17 1 -3.9690 6.2502 0.3549 18 6 2.2986 4.6023 -1.3640 19 6 2.9757 3.4209 -1.2656 20 6 3.3042 -1.2427 0.2761 21 8 4.5164 -1.2698 0.1654 22 6 2.5752 -2.4541 0.6862 23 6 1.2838 -2.4262 1.3325 24 6 0.8134 -3.6366 1.6084 25 16 1.9489 -4.8723 1.0945 26 6 3.0513 -3.7158 0.5006 27 1 4.3302 1.1451 -0.3794 28 1 1.0549 1.9143 1.1112 29 1 -0.1492 4.0336 0.9157 30 1 -1.6199 8.9962 -1.0653 31 1 2.6383 5.3626 -2.0516 32 1 3.8503 3.2462 -1.8748 33 1 0.7540 -1.5143 1.5649 34 1 -0.1345 -3.8335 2.0869 35 1 3.9994 -3.9521 0.0404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255166430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:47 Heat of formation + Delta-G solvation = 48.422551 kcal Electronic energy + Delta-G solvation = -22631.561127 eV Core-core repulsion = 19074.224665 eV Total energy + Delta-G solvation = -3557.336462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.056 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91927 -39.34309 -37.40730 -37.02301 -36.08100 -33.32535 -32.51539 -30.63605 -30.05774 -29.10037 -26.28785 -25.37785 -23.36846 -22.27076 -21.66401 -20.84630 -19.50262 -18.41609 -18.33312 -17.33987 -16.62255 -15.96552 -15.40055 -14.86345 -14.68451 -14.52401 -14.45269 -14.03931 -14.02747 -13.68574 -13.31243 -13.19402 -13.12002 -12.99961 -12.79393 -12.53288 -12.33620 -12.07252 -11.93908 -11.68879 -11.28862 -11.20428 -11.11068 -10.92420 -10.66430 -9.93086 -9.70164 -9.49081 -9.25706 -9.01225 -8.67701 -8.58560 -7.32996 -6.82641 -4.33451 0.24609 0.75258 1.31870 1.66123 1.75416 2.06659 2.26430 2.86194 2.96306 2.98615 2.99464 3.00841 3.70482 3.75791 4.05449 4.26782 4.33145 4.58561 4.76355 4.90361 4.92992 5.13749 5.20900 5.30081 5.34566 5.47783 5.67891 5.80385 5.86019 5.89416 6.02310 6.08360 6.24447 6.34463 6.61411 6.75512 6.93728 7.05622 7.10791 7.43269 7.48456 7.63136 7.83696 8.61103 9.25753 10.32571 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.002573 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.591852 B =10881.619367 C =12110.893213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.273 3.727 3 C -0.218 4.218 4 C 0.123 3.877 5 C -0.236 4.236 6 C -0.021 4.021 7 C -0.240 4.240 8 C 0.172 3.828 9 O -0.149 6.149 10 C -0.390 4.390 11 H 0.100 0.900 12 C 0.044 3.956 13 N -0.841 5.841 14 Si 0.947 3.053 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.265 1.265 18 C -0.199 4.199 19 C -0.025 4.025 20 C 0.477 3.523 21 O -0.465 6.465 22 C -0.178 4.178 23 C -0.103 4.103 24 C -0.232 4.232 25 S 0.174 5.826 26 C -0.186 4.186 27 H 0.149 0.851 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.278 0.722 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 -18.673 3.554 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.040 4.040 3 C -0.223 4.223 4 C 0.100 3.900 5 C -0.237 4.237 6 C -0.040 4.040 7 C -0.260 4.260 8 C 0.113 3.887 9 O -0.048 6.048 10 C -0.465 4.465 11 H 0.118 0.882 12 C -0.164 4.164 13 N -0.472 5.472 14 Si 0.770 3.230 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.190 1.190 18 C -0.218 4.218 19 C -0.043 4.043 20 C 0.357 3.643 21 O -0.344 6.344 22 C -0.194 4.194 23 C -0.132 4.132 24 C -0.367 4.367 25 S 0.439 5.561 26 C -0.323 4.323 27 H 0.166 0.834 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.213 -19.778 3.364 20.728 hybrid contribution -0.520 1.700 0.419 1.827 sum 4.693 -18.078 3.783 19.056 Atomic orbital electron populations 1.81264 1.11759 1.08203 1.10215 1.25217 0.92452 0.92917 0.93386 1.18263 0.85544 0.95934 1.22588 1.23185 0.99441 0.89398 0.77956 1.18448 1.01780 0.95642 1.07818 1.20868 0.91429 0.95765 0.95920 1.20823 1.04581 0.95549 1.05019 1.19711 0.91596 0.85440 0.91919 1.83847 1.31814 1.27968 1.61125 1.21571 0.94147 1.05715 1.25031 0.88236 1.25483 0.99767 0.94380 0.96799 1.69977 1.37857 1.06607 1.32782 0.85669 0.79287 0.78589 0.79456 1.19008 1.19845 1.18983 1.19933 0.98317 0.99093 1.04464 1.20607 0.97185 0.91263 0.95280 1.19137 0.87246 0.85107 0.72820 1.90656 1.14942 1.85509 1.43270 1.20788 0.96888 0.94563 1.07139 1.21535 0.93904 0.98913 0.98828 1.25500 1.05060 0.95963 1.10145 1.83001 1.09111 1.09289 1.54662 1.25658 1.04956 0.96666 1.05025 0.83368 0.87059 0.85077 0.91144 0.85727 0.85865 0.83151 0.81425 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.50 17.49 41.84 0.73 -6.77 16 2 C 0.27 4.23 8.50 -22.47 -0.19 4.04 16 3 C -0.22 -3.00 5.79 -104.49 -0.61 -3.60 16 4 C 0.12 1.61 9.44 -36.43 -0.34 1.27 16 5 C -0.24 -3.75 5.51 -105.07 -0.58 -4.33 16 6 C -0.02 -0.38 8.24 -39.41 -0.32 -0.70 16 7 C -0.24 -4.95 9.10 -39.81 -0.36 -5.31 16 8 C 0.17 3.82 6.66 -38.80 -0.26 3.56 16 9 O -0.15 -3.90 9.74 1.09 0.01 -3.89 16 10 C -0.39 -10.09 9.48 30.94 0.29 -9.80 16 11 H 0.10 2.39 5.20 -52.49 -0.27 2.12 16 12 C 0.04 1.11 5.50 -17.51 -0.10 1.02 16 13 N -0.84 -22.79 13.67 55.49 0.76 -22.03 16 14 Si 0.95 19.09 29.55 -169.99 -5.02 14.06 16 15 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 C -0.20 -3.75 9.93 -39.81 -0.40 -4.15 16 19 C -0.02 -0.39 9.75 -39.41 -0.38 -0.77 16 20 C 0.48 6.38 6.99 -32.34 -0.23 6.15 16 21 O -0.46 -6.75 16.84 5.14 0.09 -6.67 16 22 C -0.18 -2.19 5.75 -104.57 -0.60 -2.79 16 23 C -0.10 -1.22 8.99 -39.02 -0.35 -1.58 16 24 C -0.23 -2.25 11.12 28.86 0.32 -1.93 16 25 S 0.17 1.44 23.02 -107.50 -2.48 -1.04 16 26 C -0.19 -1.90 10.61 29.97 0.32 -1.58 16 27 H 0.15 1.59 7.61 -52.49 -0.40 1.19 16 28 H 0.11 1.88 5.98 -52.49 -0.31 1.57 16 29 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.15 1.92 5.53 -52.49 -0.29 1.63 16 34 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.17 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -29.05 333.49 -7.07 -36.12 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -2.40 Total: 5.68 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -3.79 Total: -20.49 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 1.49 Total: -28.80 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.10 Total: -10.56 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.05 -7.07 -36.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255166430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.540 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds