Wall clock time and date at job start Tue Mar 31 2020 14:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 119.99763 * 2 1 4 4 C 1.50700 * 109.47381 * 270.00497 * 3 2 1 5 5 H 1.07999 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00124 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00213 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99933 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47325 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47115 * 119.99798 * 8 6 4 11 11 H 1.48508 * 109.47162 * 239.99581 * 8 6 4 12 12 C 1.34778 * 120.00088 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00179 * 179.97438 * 12 2 1 14 14 C 1.50705 * 119.99943 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47106 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47103 * 179.97438 * 15 14 12 17 17 C 1.38239 * 119.98927 * 270.29890 * 16 15 14 18 18 C 1.38221 * 120.00936 * 180.25744 * 17 16 15 19 19 C 1.38333 * 119.98831 * 359.46424 * 18 17 16 20 20 Br 1.89102 * 120.00969 * 180.27905 * 19 18 17 21 21 C 1.38325 * 119.97835 * 0.25766 * 19 18 17 22 22 C 1.38216 * 119.99239 * 0.02562 * 21 19 18 23 23 H 1.09000 * 109.46375 * 269.99447 * 1 2 3 24 24 H 1.08998 * 109.47125 * 29.99587 * 1 2 3 25 25 H 1.08996 * 109.46973 * 150.00386 * 1 2 3 26 26 H 1.09003 * 109.47629 * 30.00367 * 3 2 1 27 27 H 1.09004 * 109.47033 * 150.00401 * 3 2 1 28 28 H 0.96998 * 120.00374 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47132 * 59.99674 * 14 12 2 30 30 H 1.09002 * 109.46678 * 299.99925 * 14 12 2 31 31 H 1.09000 * 109.46811 * 60.00086 * 15 14 12 32 32 H 1.08996 * 109.46854 * 300.00004 * 15 14 12 33 33 H 1.07995 * 120.00092 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00923 * 179.75014 * 18 17 16 35 35 H 1.07991 * 120.00253 * 180.02562 * 21 19 18 36 36 H 1.07992 * 120.00060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8775 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4385 3.4165 -3.4339 9 1 2.8615 2.4161 -4.3673 10 1 2.8014 4.7374 -3.6675 11 1 4.9012 3.5244 -3.6670 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3855 -2.4724 -0.0005 15 6 2.3797 -3.6353 -0.0018 16 6 1.6262 -4.9403 -0.0012 17 6 1.2767 -5.5358 1.1964 18 6 0.5902 -6.7355 1.1975 19 6 0.2433 -7.3347 -0.0001 20 35 -0.7027 -8.9721 0.0007 21 6 0.5883 -6.7356 -1.1982 22 6 1.2799 -5.5388 -1.1983 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5139 27 1 3.1500 1.1384 0.5138 28 1 4.0309 4.4436 -0.8503 29 1 0.7584 -2.5299 -0.8903 30 1 0.7592 -2.5302 0.8897 31 1 3.0070 -3.5779 0.8877 32 1 3.0056 -3.5771 -0.8922 33 1 1.5439 -5.0659 2.1314 34 1 0.3207 -7.2027 2.1332 35 1 0.3173 -7.2028 -2.1333 36 1 1.5496 -5.0712 -2.1336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267189833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:22 Heat of formation + Delta-G solvation = -20.899916 kcal Electronic energy + Delta-G solvation = -18681.517019 eV Core-core repulsion = 15597.394198 eV Total energy + Delta-G solvation = -3084.122822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76670 -38.83928 -34.94489 -34.22532 -32.62750 -31.48469 -31.29497 -29.12906 -27.62971 -25.85135 -24.46391 -23.05828 -22.41452 -20.92865 -18.36397 -16.99440 -16.56340 -16.12417 -15.89453 -15.31062 -15.17384 -14.85093 -14.29055 -13.77906 -13.56195 -13.29988 -13.27648 -12.58710 -12.23070 -12.12598 -12.06244 -11.80720 -11.56232 -11.25033 -11.18751 -10.91674 -10.89217 -10.79166 -10.58300 -10.55416 -10.17122 -9.62189 -9.26675 -9.00472 -8.68933 -8.45158 -7.65266 -6.05646 -4.10447 0.84702 1.07115 1.37101 3.28599 3.35040 3.36228 3.38802 3.44363 3.97229 4.43189 4.52188 4.65733 4.67407 5.04903 5.11664 5.16513 5.27686 5.29577 5.34653 5.47439 5.59014 5.68350 5.79821 5.88989 5.95153 5.97933 6.02631 6.20525 6.22872 6.44299 6.60072 7.04450 7.43105 7.53091 7.90815 8.22216 8.40996 8.89095 9.08445 9.54813 11.02491 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.002163 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.147776 B =12943.522081 C =13168.784166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.502 3.498 13 O -0.543 6.543 14 C -0.133 4.133 15 C -0.070 4.070 16 C -0.056 4.056 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.099 4.099 20 Br -0.060 7.060 21 C -0.089 4.089 22 C -0.111 4.111 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 -24.671 2.939 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.289 3.711 13 O -0.422 6.422 14 C -0.173 4.173 15 C -0.108 4.108 16 C -0.057 4.057 17 C -0.131 4.131 18 C -0.109 4.109 19 C -0.178 4.178 20 Br 0.025 6.975 21 C -0.109 4.109 22 C -0.130 4.130 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.721 -25.083 2.985 27.441 hybrid contribution 0.216 0.786 -0.988 1.280 sum -10.506 -24.297 1.997 26.547 Atomic orbital electron populations 1.21639 0.81465 1.02582 1.00395 1.48174 1.06175 1.07925 1.71286 1.19296 0.92572 0.78173 0.97519 1.21464 1.36372 1.06248 0.92307 0.92456 1.24948 0.95382 0.96413 0.97459 1.69941 1.38451 1.14343 1.30672 0.86440 0.78094 0.78305 0.84560 1.19812 1.20957 1.20860 1.20323 0.88115 0.85152 0.77517 1.90669 1.13926 1.87293 1.50263 1.21664 0.98976 0.92858 1.03790 1.20424 0.96602 0.88670 1.05070 1.20216 0.96159 0.96332 0.92960 1.21141 0.98539 0.94990 0.98381 1.21099 0.97689 0.95454 0.96675 1.21750 1.04722 0.94864 0.96477 1.96700 1.74242 1.27252 1.99332 1.21103 0.97599 0.95475 0.96694 1.21166 0.98377 0.94981 0.98469 0.93768 0.90807 0.92424 0.95041 0.93835 0.92760 0.89380 0.89545 0.89827 0.89715 0.84934 0.85137 0.85120 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.90 16 2 N -0.60 -12.61 2.86 -182.95 -0.52 -13.13 16 3 C 0.24 6.36 5.16 -5.20 -0.03 6.34 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.50 10.06 7.67 -10.98 -0.08 9.98 16 13 O -0.54 -13.28 15.56 5.56 0.09 -13.20 16 14 C -0.13 -1.81 4.23 -27.88 -0.12 -1.93 16 15 C -0.07 -0.89 4.63 -27.88 -0.13 -1.02 16 16 C -0.06 -0.60 5.13 -104.62 -0.54 -1.14 16 17 C -0.11 -1.08 9.70 -39.59 -0.38 -1.46 16 18 C -0.09 -0.83 9.79 -39.55 -0.39 -1.22 16 19 C -0.10 -0.96 6.22 -39.51 -0.25 -1.20 16 20 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.83 16 21 C -0.09 -0.84 9.79 -39.56 -0.39 -1.23 16 22 C -0.11 -1.11 9.70 -39.59 -0.38 -1.49 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.18 8.07 -51.93 -0.42 0.77 16 25 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 30 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 32 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -32.65 331.48 -9.37 -42.02 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.86 Total: -2.71 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.49 Total: -6.06 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.21 Total: -39.00 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.65 -9.37 -42.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267189833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.119 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds