Wall clock time and date at job start Tue Mar 31 2020 14:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 119.99763 * 2 1 4 4 C 1.50700 * 109.47381 * 270.00497 * 3 2 1 5 5 H 1.07999 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00124 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00213 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99933 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47325 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47115 * 119.99798 * 8 6 4 11 11 H 1.48508 * 109.47162 * 239.99581 * 8 6 4 12 12 C 1.34778 * 120.00088 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00179 * 179.97438 * 12 2 1 14 14 C 1.50705 * 119.99943 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47106 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47103 * 179.97438 * 15 14 12 17 17 C 1.38239 * 119.98927 * 270.29890 * 16 15 14 18 18 C 1.38221 * 120.00936 * 180.25744 * 17 16 15 19 19 C 1.38333 * 119.98831 * 359.46424 * 18 17 16 20 20 Br 1.89102 * 120.00969 * 180.27905 * 19 18 17 21 21 C 1.38325 * 119.97835 * 0.25766 * 19 18 17 22 22 C 1.38216 * 119.99239 * 0.02562 * 21 19 18 23 23 H 1.09000 * 109.46375 * 269.99447 * 1 2 3 24 24 H 1.08998 * 109.47125 * 29.99587 * 1 2 3 25 25 H 1.08996 * 109.46973 * 150.00386 * 1 2 3 26 26 H 1.09003 * 109.47629 * 30.00367 * 3 2 1 27 27 H 1.09004 * 109.47033 * 150.00401 * 3 2 1 28 28 H 0.96998 * 120.00374 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47132 * 59.99674 * 14 12 2 30 30 H 1.09002 * 109.46678 * 299.99925 * 14 12 2 31 31 H 1.09000 * 109.46811 * 60.00086 * 15 14 12 32 32 H 1.08996 * 109.46854 * 300.00004 * 15 14 12 33 33 H 1.07995 * 120.00092 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00923 * 179.75014 * 18 17 16 35 35 H 1.07991 * 120.00253 * 180.02562 * 21 19 18 36 36 H 1.07992 * 120.00060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8775 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4385 3.4165 -3.4339 9 1 2.8615 2.4161 -4.3673 10 1 2.8014 4.7374 -3.6675 11 1 4.9012 3.5244 -3.6670 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3855 -2.4724 -0.0005 15 6 2.3797 -3.6353 -0.0018 16 6 1.6262 -4.9403 -0.0012 17 6 1.2767 -5.5358 1.1964 18 6 0.5902 -6.7355 1.1975 19 6 0.2433 -7.3347 -0.0001 20 35 -0.7027 -8.9721 0.0007 21 6 0.5883 -6.7356 -1.1982 22 6 1.2799 -5.5388 -1.1983 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5139 27 1 3.1500 1.1384 0.5138 28 1 4.0309 4.4436 -0.8503 29 1 0.7584 -2.5299 -0.8903 30 1 0.7592 -2.5302 0.8897 31 1 3.0070 -3.5779 0.8877 32 1 3.0056 -3.5771 -0.8922 33 1 1.5439 -5.0659 2.1314 34 1 0.3207 -7.2027 2.1332 35 1 0.3173 -7.2028 -2.1333 36 1 1.5496 -5.0712 -2.1336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267189833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:22 Heat of formation + Delta-G solvation = -39.265357 kcal Electronic energy + Delta-G solvation = -18682.313405 eV Core-core repulsion = 15597.394198 eV Total energy + Delta-G solvation = -3084.919207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84705 -40.11280 -36.62963 -35.28028 -34.67460 -32.38529 -32.00302 -30.39187 -29.17096 -27.29780 -25.90291 -24.05405 -23.77024 -21.82263 -19.90760 -18.70257 -18.06278 -17.23486 -17.08259 -16.90125 -16.23271 -16.04467 -15.93312 -14.74387 -14.62530 -14.40096 -14.26377 -14.01798 -13.73012 -13.55441 -13.43283 -13.27506 -12.95818 -12.78822 -12.50936 -12.36324 -12.21487 -12.03913 -11.83075 -11.66933 -11.63875 -11.23872 -10.65418 -10.59169 -9.97517 -9.51567 -9.40070 -8.22721 -6.37750 0.08993 0.36130 0.66492 1.36379 1.38730 1.50581 1.87251 2.32549 2.45822 2.67555 3.06701 3.61752 3.80069 3.99422 4.03206 4.15012 4.25053 4.41575 4.42738 4.48305 4.67070 4.73337 4.75871 4.90044 4.97767 5.04179 5.08201 5.21478 5.23600 5.24700 5.27431 5.56675 5.63814 5.84649 5.86587 6.06139 6.70182 6.81675 7.28531 7.51017 8.84489 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.002163 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.147776 B =12943.522081 C =13168.784166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.257 3.743 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.492 3.508 13 O -0.600 6.600 14 C -0.115 4.115 15 C -0.063 4.063 16 C -0.064 4.064 17 C -0.113 4.113 18 C -0.091 4.091 19 C -0.107 4.107 20 Br -0.054 7.054 21 C -0.092 4.092 22 C -0.115 4.115 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.022 0.978 27 H -0.003 1.003 28 H 0.267 0.733 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 -26.130 2.115 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.344 5.344 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.481 6.481 14 C -0.154 4.154 15 C -0.101 4.101 16 C -0.064 4.064 17 C -0.131 4.131 18 C -0.111 4.111 19 C -0.186 4.186 20 Br 0.031 6.969 21 C -0.112 4.112 22 C -0.134 4.134 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.040 0.960 27 H 0.015 0.985 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.617 -26.565 2.167 29.489 hybrid contribution 0.770 1.184 -0.674 1.565 sum -11.848 -25.381 1.493 28.050 Atomic orbital electron populations 1.21937 0.77873 1.03999 1.02595 1.48225 1.08435 1.06485 1.71277 1.18758 0.91113 0.80613 0.96019 1.21733 1.36646 1.06502 0.93050 0.92833 1.25890 0.94954 0.96475 1.02047 1.70058 1.39023 1.14844 1.33026 0.85348 0.77861 0.78416 0.79060 1.18993 1.19431 1.20789 1.21481 0.87869 0.86740 0.75764 1.90636 1.16710 1.88231 1.52563 1.21635 0.98743 0.88874 1.06195 1.20270 0.96356 0.89636 1.03789 1.20009 0.96935 0.95656 0.93811 1.21291 0.98193 0.95120 0.98527 1.21301 0.97270 0.95243 0.97297 1.21949 1.04655 0.95178 0.96797 1.96711 1.74042 1.26792 1.99331 1.21277 0.97307 0.95275 0.97340 1.21285 0.98302 0.95231 0.98579 0.91116 0.91763 0.88652 0.95977 0.98466 0.92407 0.87077 0.86510 0.90922 0.91429 0.83710 0.83563 0.83762 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -25.62 2.86 -851.12 -2.43 -28.05 16 3 C 0.26 13.91 5.16 85.63 0.44 14.36 16 4 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.29 5.46 84.65 0.46 0.76 16 7 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 8 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.49 19.72 7.67 87.66 0.67 20.39 16 13 O -0.60 -30.48 15.56 -3.03 -0.05 -30.52 16 14 C -0.11 -2.90 4.23 29.85 0.13 -2.77 16 15 C -0.06 -1.53 4.63 29.85 0.14 -1.40 16 16 C -0.06 -1.24 5.13 -19.86 -0.10 -1.34 16 17 C -0.11 -1.92 9.70 22.27 0.22 -1.70 16 18 C -0.09 -1.47 9.79 22.29 0.22 -1.25 16 19 C -0.11 -1.81 6.22 22.31 0.14 -1.68 16 20 Br -0.05 -0.84 33.70 -20.37 -0.69 -1.53 16 21 C -0.09 -1.54 9.79 22.29 0.22 -1.32 16 22 C -0.12 -2.06 9.70 22.27 0.22 -1.85 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 25 H 0.10 2.02 6.44 -2.39 -0.02 2.00 16 26 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 27 H 0.00 -0.18 7.42 -2.38 -0.02 -0.19 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.11 2.35 7.40 -2.38 -0.02 2.33 16 30 H 0.12 2.29 8.11 -2.39 -0.02 2.28 16 31 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 32 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.14 1.94 8.06 -2.92 -0.02 1.91 16 36 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -73.35 331.48 4.51 -68.84 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.07 Total: 5.82 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 4.30 Total: -5.27 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.15 Total: -84.28 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -0.69 Total: -1.53 kcal Total: -73.35 4.51 -68.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267189833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.577 kcal (2) G-P(sol) polarization free energy of solvation -73.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds