Wall clock time and date at job start Tue Mar 31 2020 15:12:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31555 * 1
3 3 Si 1.86801 * 119.99865 * 2 1
4 4 H 1.48495 * 109.47314 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.46849 * 299.99799 * 3 2 1
6 6 H 1.48499 * 109.47421 * 59.99410 * 3 2 1
7 7 C 1.38651 * 120.00226 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00047 * 180.02562 * 7 2 1
9 9 O 1.34832 * 119.99916 * 0.02562 * 7 2 1
10 10 C 1.35747 * 116.99802 * 185.05858 * 9 7 2
11 11 C 1.38882 * 120.07466 * 354.45511 * 10 9 7
12 12 C 1.38093 * 119.93298 * 180.02562 * 11 10 9
13 13 C 1.38290 * 120.07364 * 0.02716 * 12 11 10
14 14 C 1.50707 * 119.93475 * 179.97438 * 13 12 11
15 15 N 1.46494 * 109.47044 * 89.99873 * 14 13 12
16 16 C 1.34778 * 119.99853 * 180.02562 * 15 14 13
17 17 O 1.21284 * 119.99872 * 359.97438 * 16 15 14
18 18 C 1.50701 * 119.99935 * 179.97438 * 16 15 14
19 19 S 1.82407 * 110.31232 * 154.99674 * 18 16 15
20 20 C 1.82128 * 102.07763 * 240.69229 * 19 18 16
21 21 C 1.54489 * 107.01252 * 331.01497 * 20 19 18
22 22 S 1.82844 * 110.31451 * 39.30276 * 18 16 15
23 23 C 1.38312 * 120.13844 * 0.24600 * 13 12 11
24 24 C 1.38104 * 120.06480 * 359.45747 * 23 13 12
25 25 H 0.96999 * 120.00553 * 0.02562 * 1 2 3
26 26 H 1.08004 * 120.02814 * 0.02562 * 11 10 9
27 27 H 1.08005 * 119.96209 * 180.02562 * 12 11 10
28 28 H 1.08990 * 109.46735 * 329.99537 * 14 13 12
29 29 H 1.09006 * 109.46840 * 209.99936 * 14 13 12
30 30 H 0.97005 * 120.00236 * 359.97438 * 15 14 13
31 31 H 1.08995 * 110.35716 * 277.14774 * 18 16 15
32 32 H 1.08999 * 109.95588 * 90.41281 * 20 19 18
33 33 H 1.09001 * 109.95527 * 211.61834 * 20 19 18
34 34 H 1.09001 * 110.34269 * 165.27529 * 21 20 19
35 35 H 1.09008 * 110.34107 * 287.52772 * 21 20 19
36 36 H 1.07996 * 119.96946 * 179.70412 * 23 13 12
37 37 H 1.07992 * 120.03521 * 180.26984 * 24 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2495 1.6178 0.0000
4 1 3.7095 1.3465 0.0006
5 1 1.8907 2.3964 -1.2126
6 1 1.8907 2.3966 1.2124
7 6 2.0089 -1.2007 0.0005
8 1 3.0888 -1.2007 0.0010
9 8 1.3347 -2.3684 0.0005
10 6 2.0700 -3.5045 0.1077
11 6 3.4572 -3.4394 0.0951
12 6 4.2023 -4.5970 0.2038
13 6 3.5687 -5.8202 0.3246
14 6 4.3849 -7.0816 0.4424
15 7 4.6557 -7.3578 1.8554
16 6 5.3749 -8.4430 2.2041
17 8 5.7976 -9.1911 1.3481
18 6 5.6539 -8.7269 3.6576
19 16 5.9531 -10.5086 3.9087
20 6 4.6175 -10.9605 5.0617
21 6 4.2943 -9.7004 5.8951
22 16 4.1828 -8.3425 4.6732
23 6 2.1873 -5.8890 0.3318
24 6 1.4365 -4.7344 0.2296
25 1 -0.4851 0.8400 -0.0004
26 1 3.9527 -2.4844 0.0004
27 1 5.2812 -4.5469 0.1945
28 1 5.3274 -6.9555 -0.0903
29 1 3.8312 -7.9145 0.0090
30 1 4.3179 -6.7593 2.5400
31 1 6.5115 -8.1474 3.9993
32 1 3.7351 -11.2743 4.5041
33 1 4.9489 -11.7655 5.7176
34 1 3.3437 -9.8230 6.4141
35 1 5.0940 -9.5029 6.6090
36 1 1.6953 -6.8462 0.4214
37 1 0.3580 -4.7883 0.2396
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000270514008.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:12:12
Heat of formation + Delta-G solvation = -48.205803 kcal
Electronic energy + Delta-G solvation = -21587.644655 eV
Core-core repulsion = 18161.562025 eV
Total energy + Delta-G solvation = -3426.082631 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.059 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.08084 -40.55118 -38.52059 -35.78524 -34.30363 -34.20999 -32.23982 -31.83235
-30.40144 -27.63208 -26.11517 -24.72593 -23.66522 -22.29222 -21.93914 -19.89956
-19.28839 -18.79275 -18.06227 -17.81600 -16.85310 -16.63089 -16.34134 -16.24389
-16.07865 -15.70438 -15.54429 -15.22068 -14.87671 -14.66563 -14.43286 -14.30612
-13.88512 -13.62823 -13.51609 -13.32749 -13.12809 -13.01292 -12.57808 -12.37529
-12.26911 -12.09826 -11.89921 -11.37548 -11.21317 -10.83830 -10.79762 -10.21564
-9.82763 -9.12673 -9.04053 -8.94434 -8.49108 -6.17332 -0.15616 0.11816
0.52231 0.56362 0.66535 1.35812 1.42881 1.52399 1.53692 1.56505
2.02291 2.16579 2.81572 3.14058 3.39005 3.46067 3.48407 3.80133
3.86691 3.91070 4.00639 4.15567 4.37664 4.41966 4.50938 4.54724
4.66159 4.69063 4.78309 5.01993 5.13334 5.24647 5.25455 5.50392
5.67568 5.72401 6.00730 6.13592 6.32570 6.95826 6.96923 7.74707
8.73940
Molecular weight = 325.06amu
Principal moments of inertia in cm(-1)
A = 0.023356 B = 0.002377 C = 0.002311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1198.531879 B =11777.261971 C =12110.607725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.021 4.021
3 Si 1.018 2.982
4 H -0.251 1.251
5 H -0.269 1.269
6 H -0.269 1.269
7 C -0.413 4.413
8 H 0.104 0.896
9 O -0.228 6.228
10 C 0.124 3.876
11 C -0.243 4.243
12 C -0.045 4.045
13 C -0.185 4.185
14 C 0.184 3.816
15 N -0.702 5.702
16 C 0.537 3.463
17 O -0.548 6.548
18 C -0.049 4.049
19 S -0.234 6.234
20 C -0.085 4.085
21 C -0.070 4.070
22 S -0.248 6.248
23 C -0.042 4.042
24 C -0.204 4.204
25 H 0.273 0.727
26 H 0.121 0.879
27 H 0.140 0.860
28 H 0.077 0.923
29 H 0.077 0.923
30 H 0.409 0.591
31 H 0.162 0.838
32 H 0.105 0.895
33 H 0.155 0.845
34 H 0.155 0.845
35 H 0.123 0.877
36 H 0.146 0.854
37 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.044 -19.300 13.051 25.784
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.557 5.557
2 C -0.219 4.219
3 Si 0.837 3.163
4 H -0.174 1.174
5 H -0.194 1.194
6 H -0.194 1.194
7 C -0.489 4.489
8 H 0.121 0.879
9 O -0.134 6.134
10 C 0.073 3.927
11 C -0.263 4.263
12 C -0.064 4.064
13 C -0.186 4.186
14 C 0.062 3.938
15 N -0.354 5.354
16 C 0.319 3.681
17 O -0.426 6.426
18 C -0.291 4.291
19 S -0.008 6.008
20 C -0.236 4.236
21 C -0.220 4.220
22 S -0.022 6.022
23 C -0.061 4.061
24 C -0.223 4.223
25 H 0.082 0.918
26 H 0.139 0.861
27 H 0.158 0.842
28 H 0.095 0.905
29 H 0.095 0.905
30 H 0.245 0.755
31 H 0.179 0.821
32 H 0.123 0.877
33 H 0.172 0.828
34 H 0.173 0.827
35 H 0.141 0.859
36 H 0.164 0.836
37 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 10.973 -19.446 11.855 25.280
hybrid contribution -0.239 1.276 0.634 1.445
sum 10.734 -18.170 12.489 24.523
Atomic orbital electron populations
1.70181 1.08036 1.28830 1.48615 1.26581 0.96823 1.02749 0.95777
0.84534 0.78313 0.74878 0.78539 1.17385 1.19441 1.19360 1.21875
0.92583 0.81310 1.53134 0.87881 1.83950 1.36064 1.12668 1.80729
1.19988 0.91620 0.87949 0.93130 1.21241 0.93011 1.00050 1.11951
1.20941 0.99862 0.90696 0.94858 1.19464 0.93501 0.94076 1.11599
1.19993 0.98771 0.93939 0.81093 1.46143 1.53542 1.26215 1.09528
1.19682 0.78317 0.81059 0.89066 1.90752 1.52358 1.48391 1.51071
1.25805 1.04563 1.00823 0.97880 1.87669 1.43747 1.06696 1.62691
1.24629 0.99479 1.01226 0.98219 1.24742 1.09742 0.89562 0.97927
1.88100 1.33556 1.45050 1.35543 1.20878 0.93065 0.97030 0.95109
1.20443 1.00103 0.90366 1.11404 0.91774 0.86096 0.84224 0.90479
0.90492 0.75487 0.82084 0.87685 0.82762 0.82695 0.85862 0.83607
0.86613
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.46 13.67 21.61 0.30 -55.17 16
2 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16
3 Si 1.02 41.94 29.55 68.60 2.03 43.96 16
4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16
5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16
6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16
7 C -0.41 -23.44 9.49 67.92 0.64 -22.79 16
8 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16
9 O -0.23 -13.36 9.76 -22.73 -0.22 -13.58 16
10 C 0.12 5.93 6.65 22.58 0.15 6.08 16
11 C -0.24 -10.04 9.17 22.39 0.21 -9.84 16
12 C -0.05 -1.45 9.69 22.25 0.22 -1.24 16
13 C -0.19 -5.41 5.25 -19.83 -0.10 -5.52 16
14 C 0.18 4.56 5.80 85.64 0.50 5.06 16
15 N -0.70 -16.32 5.36 -466.79 -2.50 -18.82 16
16 C 0.54 13.30 7.33 87.66 0.64 13.94 16
17 O -0.55 -17.37 16.21 -3.04 -0.05 -17.41 16
18 C -0.05 -0.93 4.03 71.24 0.29 -0.64 16
19 S -0.23 -4.32 21.65 -49.83 -1.08 -5.40 16
20 C -0.09 -0.76 6.84 72.49 0.50 -0.26 16
21 C -0.07 -0.51 7.05 72.49 0.51 0.00 16
22 S -0.25 -3.99 21.13 -49.83 -1.05 -5.04 16
23 C -0.04 -1.34 9.69 22.26 0.22 -1.12 16
24 C -0.20 -8.25 9.99 22.39 0.22 -8.03 16
25 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16
26 H 0.12 5.10 5.64 -2.91 -0.02 5.09 16
27 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16
28 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16
29 H 0.08 1.89 8.08 -2.38 -0.02 1.87 16
30 H 0.41 9.05 7.45 -92.70 -0.69 8.36 16
31 H 0.16 2.56 8.14 -2.39 -0.02 2.55 16
32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16
34 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16
35 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16
36 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16
37 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16
Total: -1.00 -73.79 342.78 2.29 -71.50
By element:
Atomic # 1 Polarization: 24.60 SS G_CDS: 0.42 Total: 25.03 kcal
Atomic # 6 Polarization: -29.52 SS G_CDS: 4.45 Total: -25.07 kcal
Atomic # 7 Polarization: -71.78 SS G_CDS: -2.20 Total: -73.98 kcal
Atomic # 8 Polarization: -30.72 SS G_CDS: -0.27 Total: -30.99 kcal
Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal
Atomic # 16 Polarization: -8.31 SS G_CDS: -2.13 Total: -10.44 kcal
Total: -73.79 2.29 -71.50 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000270514008.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.291 kcal
(2) G-P(sol) polarization free energy of solvation -73.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds