Wall clock time and date at job start Tue Mar 31 2020 14:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46893 * 2 1 4 4 C 1.52997 * 109.47095 * 240.00301 * 2 1 3 5 5 C 1.50691 * 109.47446 * 64.99905 * 4 2 1 6 6 C 1.38245 * 119.99278 * 269.72446 * 5 4 2 7 7 C 1.38220 * 120.01354 * 179.76687 * 6 5 4 8 8 C 1.38325 * 119.98524 * 0.50938 * 7 6 5 9 9 Br 1.89102 * 120.00886 * 179.72565 * 8 7 6 10 10 C 1.38323 * 119.98121 * 359.74514 * 8 7 6 11 11 C 1.38220 * 119.99270 * 0.02562 * 10 8 7 12 12 C 1.50705 * 109.47080 * 119.99979 * 2 1 3 13 13 O 1.21286 * 119.99837 * 105.71246 * 12 2 1 14 14 N 1.34771 * 119.99773 * 285.71419 * 12 2 1 15 15 C 1.46504 * 119.99858 * 185.27419 * 14 12 2 16 16 C 1.37096 * 120.00545 * 5.27642 * 14 12 2 17 17 H 1.08004 * 119.99703 * 19.48304 * 16 14 12 18 18 C 1.38948 * 120.00360 * 199.49159 * 16 14 12 19 19 N 1.31412 * 119.99761 * 351.24121 * 18 16 14 20 20 Si 1.86801 * 120.00235 * 171.24834 * 18 16 14 21 21 H 1.48490 * 109.47208 * 59.99362 * 20 18 16 22 22 H 1.48504 * 109.47022 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46822 * 299.99349 * 20 18 16 24 24 H 1.09003 * 109.46900 * 53.35861 * 1 2 3 25 25 H 1.08997 * 109.46662 * 173.35427 * 1 2 3 26 26 H 1.08997 * 109.46736 * 293.35757 * 1 2 3 27 27 H 1.09001 * 109.47135 * 185.00291 * 4 2 1 28 28 H 1.09000 * 109.47328 * 304.99518 * 4 2 1 29 29 H 1.08002 * 119.99156 * 0.02562 * 6 5 4 30 30 H 1.07995 * 120.00292 * 180.23618 * 7 6 5 31 31 H 1.08008 * 120.00499 * 179.97438 * 10 8 7 32 32 H 1.07999 * 119.99305 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.47489 * 234.50048 * 15 14 12 34 34 H 1.09003 * 109.46998 * 354.50529 * 15 14 12 35 35 H 1.09008 * 109.47041 * 114.49460 * 15 14 12 36 36 H 0.96998 * 120.00336 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4765 6 6 0.4381 -0.2090 -3.1030 7 6 0.0698 0.5079 -4.2259 8 6 0.9103 1.4845 -4.7290 9 35 0.4107 2.4603 -6.2698 10 6 2.1166 1.7468 -4.1050 11 6 2.4819 1.0327 -2.9793 12 6 2.0324 -0.7104 1.2305 13 8 2.5027 -1.8245 1.1380 14 7 1.9589 -0.1077 2.4337 15 6 2.5509 -0.7479 3.6110 16 6 1.3303 1.1045 2.5561 17 1 0.6347 1.4310 1.7971 18 6 1.5882 1.9130 3.6563 19 7 2.2965 1.4488 4.6611 20 14 0.9278 3.6596 3.7072 21 1 -0.5544 3.6311 3.6224 22 1 1.3381 4.3071 4.9791 23 1 1.4745 4.4290 2.5607 24 1 -0.3633 0.6133 -0.8246 25 1 -0.3632 -1.0208 -0.1189 26 1 -0.3633 0.4074 0.9434 27 1 3.1263 -0.7994 -1.2056 28 1 1.6055 -1.7197 -1.2952 29 1 -0.2162 -0.9744 -2.7124 30 1 -0.8720 0.3025 -4.7128 31 1 2.7734 2.5090 -4.4977 32 1 3.4239 1.2372 -2.4924 33 1 1.7969 -0.8388 4.3929 34 1 2.9155 -1.7390 3.3408 35 1 3.3809 -0.1424 3.9752 36 1 2.4762 2.0130 5.4294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270861486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:04 Heat of formation + Delta-G solvation = -9.620843 kcal Electronic energy + Delta-G solvation = -19505.914707 eV Core-core repulsion = 16422.280982 eV Total energy + Delta-G solvation = -3083.633724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.65056 -38.53390 -35.02996 -34.39646 -31.91920 -31.38145 -31.07588 -29.52643 -26.45772 -26.04785 -24.71697 -22.85730 -22.18740 -20.54521 -18.87838 -17.00803 -16.68573 -16.01622 -15.45916 -15.02708 -14.49803 -14.31001 -14.08175 -13.58564 -13.39295 -13.19625 -13.00752 -12.55880 -12.27932 -11.79484 -11.52992 -11.43701 -11.20383 -11.09423 -11.03747 -10.94644 -10.59870 -10.46031 -10.43661 -10.38266 -10.31102 -10.08138 -9.07724 -9.02885 -8.55417 -8.27673 -7.84682 -6.32876 -3.96164 1.09287 1.30285 1.55730 3.08390 3.16502 3.17358 3.60828 3.89300 4.03900 4.70959 4.74755 4.87085 5.05043 5.14239 5.30392 5.37060 5.51978 5.63811 5.69453 5.85092 5.92359 6.14547 6.17398 6.23485 6.27191 6.34146 6.48461 6.63996 6.68745 6.83165 6.85597 6.93688 7.19091 7.39394 7.54054 7.77748 8.37585 9.04485 9.52959 9.92771 10.61162 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.003207 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.849686 B = 8729.605209 C = 9743.189525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.088 0.912 4 C -0.064 4.064 5 C -0.048 4.048 6 C -0.110 4.110 7 C -0.091 4.091 8 C -0.101 4.101 9 Br -0.065 7.065 10 C -0.089 4.089 11 C -0.112 4.112 12 C 0.456 3.544 13 O -0.616 6.616 14 N -0.443 5.443 15 C 0.114 3.886 16 C -0.337 4.337 17 H 0.105 0.895 18 C 0.038 3.962 19 N -0.872 5.872 20 Si 0.920 3.080 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 2.912 -18.066 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.107 0.893 4 C -0.102 4.102 5 C -0.048 4.048 6 C -0.129 4.129 7 C -0.111 4.111 8 C -0.180 4.180 9 Br 0.020 6.980 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.244 3.756 13 O -0.505 6.505 14 N -0.160 5.160 15 C -0.029 4.029 16 C -0.465 4.465 17 H 0.122 0.878 18 C -0.166 4.166 19 N -0.510 5.510 20 Si 0.746 3.254 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.541 2.823 -18.422 18.970 hybrid contribution -0.284 0.915 0.600 1.130 sum -3.824 3.738 -17.822 18.607 Atomic orbital electron populations 1.21908 0.94293 1.01411 1.02816 1.20895 0.96798 1.00438 0.92346 0.89339 1.20503 1.01940 0.98115 0.89645 1.20260 0.93607 0.95115 0.95813 1.21139 0.96597 1.00102 0.95054 1.21060 0.98935 0.94704 0.96375 1.21683 0.98744 1.01036 0.96546 1.96665 1.92412 1.73396 1.35543 1.21068 0.94824 0.99457 0.95558 1.21154 1.00390 0.95796 0.95737 1.19945 0.83947 0.87070 0.84620 1.90504 1.52859 1.20805 1.86299 1.43639 1.48052 1.18489 1.05850 1.21635 0.99344 0.95053 0.86843 1.19827 1.23674 0.93760 1.09215 0.87772 1.25412 0.96189 0.99684 0.95350 1.70133 1.38091 1.36098 1.06719 0.86102 0.79174 0.82192 0.77891 1.19773 1.20758 1.19679 0.92823 0.93086 0.90627 0.90488 0.90236 0.85048 0.85338 0.85299 0.84981 0.93257 0.94626 0.90385 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.18 37.16 0.30 -2.18 16 2 C -0.08 -1.57 1.89 -91.77 -0.17 -1.74 16 3 H 0.09 1.70 7.64 -51.93 -0.40 1.30 16 4 C -0.06 -1.04 4.16 -27.89 -0.12 -1.16 16 5 C -0.05 -0.65 4.71 -104.62 -0.49 -1.14 16 6 C -0.11 -1.36 8.16 -39.59 -0.32 -1.68 16 7 C -0.09 -1.05 9.79 -39.56 -0.39 -1.44 16 8 C -0.10 -1.20 6.22 -39.52 -0.25 -1.45 16 9 Br -0.07 -0.69 33.70 -68.01 -2.29 -2.98 16 10 C -0.09 -1.06 9.79 -39.56 -0.39 -1.45 16 11 C -0.11 -1.43 9.70 -39.59 -0.38 -1.82 16 12 C 0.46 10.80 6.89 -10.99 -0.08 10.72 16 13 O -0.62 -16.01 15.43 5.55 0.09 -15.92 16 14 N -0.44 -11.20 3.03 -122.19 -0.37 -11.57 16 15 C 0.11 2.87 8.93 59.85 0.53 3.40 16 16 C -0.34 -8.35 8.48 -14.93 -0.13 -8.48 16 17 H 0.10 2.40 4.76 -52.48 -0.25 2.15 16 18 C 0.04 0.95 5.46 -17.47 -0.10 0.85 16 19 N -0.87 -22.50 9.76 55.50 0.54 -21.96 16 20 Si 0.92 19.14 29.56 -169.99 -5.03 14.12 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 24 H 0.05 0.79 6.73 -51.93 -0.35 0.44 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.40 5.68 -51.93 -0.30 1.11 16 27 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 28 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 29 H 0.13 1.46 8.05 -52.49 -0.42 1.04 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 32 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.05 1.25 7.71 -51.93 -0.40 0.85 16 34 H 0.04 0.87 6.91 -51.93 -0.36 0.51 16 35 H 0.08 2.03 6.52 -51.92 -0.34 1.69 16 36 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -27.88 315.90 -8.74 -36.62 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.47 Total: 4.48 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.97 Total: -7.55 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.17 Total: -33.53 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.88 -8.74 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270861486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.001 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds