Wall clock time and date at job start Tue Mar 31 2020 14:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46893 * 2 1 4 4 C 1.52997 * 109.47095 * 240.00301 * 2 1 3 5 5 C 1.50691 * 109.47446 * 64.99905 * 4 2 1 6 6 C 1.38245 * 119.99278 * 269.72446 * 5 4 2 7 7 C 1.38220 * 120.01354 * 179.76687 * 6 5 4 8 8 C 1.38325 * 119.98524 * 0.50938 * 7 6 5 9 9 Br 1.89102 * 120.00886 * 179.72565 * 8 7 6 10 10 C 1.38323 * 119.98121 * 359.74514 * 8 7 6 11 11 C 1.38220 * 119.99270 * 0.02562 * 10 8 7 12 12 C 1.50705 * 109.47080 * 119.99979 * 2 1 3 13 13 O 1.21286 * 119.99837 * 105.71246 * 12 2 1 14 14 N 1.34771 * 119.99773 * 285.71419 * 12 2 1 15 15 C 1.46504 * 119.99858 * 185.27419 * 14 12 2 16 16 C 1.37096 * 120.00545 * 5.27642 * 14 12 2 17 17 H 1.08004 * 119.99703 * 19.48304 * 16 14 12 18 18 C 1.38948 * 120.00360 * 199.49159 * 16 14 12 19 19 N 1.31412 * 119.99761 * 351.24121 * 18 16 14 20 20 Si 1.86801 * 120.00235 * 171.24834 * 18 16 14 21 21 H 1.48490 * 109.47208 * 59.99362 * 20 18 16 22 22 H 1.48504 * 109.47022 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46822 * 299.99349 * 20 18 16 24 24 H 1.09003 * 109.46900 * 53.35861 * 1 2 3 25 25 H 1.08997 * 109.46662 * 173.35427 * 1 2 3 26 26 H 1.08997 * 109.46736 * 293.35757 * 1 2 3 27 27 H 1.09001 * 109.47135 * 185.00291 * 4 2 1 28 28 H 1.09000 * 109.47328 * 304.99518 * 4 2 1 29 29 H 1.08002 * 119.99156 * 0.02562 * 6 5 4 30 30 H 1.07995 * 120.00292 * 180.23618 * 7 6 5 31 31 H 1.08008 * 120.00499 * 179.97438 * 10 8 7 32 32 H 1.07999 * 119.99305 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.47489 * 234.50048 * 15 14 12 34 34 H 1.09003 * 109.46998 * 354.50529 * 15 14 12 35 35 H 1.09008 * 109.47041 * 114.49460 * 15 14 12 36 36 H 0.96998 * 120.00336 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4765 6 6 0.4381 -0.2090 -3.1030 7 6 0.0698 0.5079 -4.2259 8 6 0.9103 1.4845 -4.7290 9 35 0.4107 2.4603 -6.2698 10 6 2.1166 1.7468 -4.1050 11 6 2.4819 1.0327 -2.9793 12 6 2.0324 -0.7104 1.2305 13 8 2.5027 -1.8245 1.1380 14 7 1.9589 -0.1077 2.4337 15 6 2.5509 -0.7479 3.6110 16 6 1.3303 1.1045 2.5561 17 1 0.6347 1.4310 1.7971 18 6 1.5882 1.9130 3.6563 19 7 2.2965 1.4488 4.6611 20 14 0.9278 3.6596 3.7072 21 1 -0.5544 3.6311 3.6224 22 1 1.3381 4.3071 4.9791 23 1 1.4745 4.4290 2.5607 24 1 -0.3633 0.6133 -0.8246 25 1 -0.3632 -1.0208 -0.1189 26 1 -0.3633 0.4074 0.9434 27 1 3.1263 -0.7994 -1.2056 28 1 1.6055 -1.7197 -1.2952 29 1 -0.2162 -0.9744 -2.7124 30 1 -0.8720 0.3025 -4.7128 31 1 2.7734 2.5090 -4.4977 32 1 3.4239 1.2372 -2.4924 33 1 1.7969 -0.8388 4.3929 34 1 2.9155 -1.7390 3.3408 35 1 3.3809 -0.1424 3.9752 36 1 2.4762 2.0130 5.4294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270861486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:04 Heat of formation + Delta-G solvation = -22.616952 kcal Electronic energy + Delta-G solvation = -19506.478260 eV Core-core repulsion = 16422.280982 eV Total energy + Delta-G solvation = -3084.197278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96197 -40.04996 -36.82982 -35.88500 -33.43121 -32.87290 -31.99505 -30.62122 -28.29332 -27.36210 -26.55449 -23.90992 -23.47228 -21.77682 -20.69455 -18.79292 -18.09935 -17.31477 -16.57624 -16.22353 -16.15804 -16.02038 -15.73007 -14.87377 -14.81258 -14.37679 -14.27058 -13.83644 -13.70851 -13.34201 -13.23402 -13.11611 -12.71222 -12.58897 -12.48885 -12.19048 -12.12058 -12.00417 -11.83705 -11.71095 -11.51532 -11.22698 -10.96498 -10.23790 -9.93289 -9.83108 -9.47134 -8.22090 -5.91786 0.12539 0.38502 0.67085 1.44714 1.47746 1.57181 2.04747 2.29224 2.63464 3.05243 3.16290 3.81963 3.87103 4.01445 4.10004 4.19319 4.34541 4.44644 4.46734 4.62986 4.74282 4.83025 4.91205 4.96953 5.06222 5.08192 5.09831 5.25719 5.28626 5.30621 5.34288 5.45118 5.59151 5.69260 5.85222 5.88717 6.44321 7.12911 7.61918 8.01389 8.73702 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.003207 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.849686 B = 8729.605209 C = 9743.189525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 H 0.086 0.914 4 C -0.053 4.053 5 C -0.061 4.061 6 C -0.110 4.110 7 C -0.090 4.090 8 C -0.107 4.107 9 Br -0.052 7.052 10 C -0.091 4.091 11 C -0.119 4.119 12 C 0.446 3.554 13 O -0.644 6.644 14 N -0.460 5.460 15 C 0.127 3.873 16 C -0.353 4.353 17 H 0.121 0.879 18 C -0.008 4.008 19 N -0.903 5.903 20 Si 0.988 3.012 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.264 1.264 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 4.408 -20.010 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.091 4.091 5 C -0.061 4.061 6 C -0.129 4.129 7 C -0.110 4.110 8 C -0.186 4.186 9 Br 0.033 6.967 10 C -0.111 4.111 11 C -0.138 4.138 12 C 0.237 3.763 13 O -0.534 6.534 14 N -0.178 5.178 15 C -0.017 4.017 16 C -0.479 4.479 17 H 0.139 0.861 18 C -0.209 4.209 19 N -0.542 5.542 20 Si 0.811 3.189 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.189 1.189 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.892 4.318 -20.385 21.404 hybrid contribution 0.157 0.400 1.155 1.232 sum -4.735 4.719 -19.230 20.359 Atomic orbital electron populations 1.21833 0.92511 1.02259 1.02911 1.20865 0.98132 0.99723 0.90934 0.89583 1.20308 1.00991 0.97996 0.89759 1.20038 0.94796 0.95836 0.95426 1.21268 0.96134 1.00332 0.95180 1.21287 0.99604 0.94131 0.95950 1.21907 0.98745 1.01058 0.96884 1.96686 1.92271 1.73058 1.34691 1.21245 0.95170 0.99561 0.95120 1.21256 1.00544 0.95766 0.96196 1.20864 0.83058 0.86839 0.85556 1.90473 1.53889 1.22181 1.86899 1.43927 1.48489 1.19077 1.06264 1.21404 0.98582 0.94635 0.87049 1.20272 1.24196 0.93580 1.09900 0.86128 1.26304 0.96424 1.03393 0.94817 1.70252 1.39314 1.37402 1.07262 0.85055 0.78937 0.77104 0.77765 1.18722 1.21032 1.18856 0.90088 0.92515 0.92348 0.91781 0.90756 0.83875 0.83355 0.83751 0.84642 0.94331 0.94968 0.91592 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.18 71.98 0.59 -3.83 16 2 C -0.08 -2.78 1.89 -11.54 -0.02 -2.80 16 3 H 0.09 3.22 7.64 -2.39 -0.02 3.21 16 4 C -0.05 -1.67 4.16 29.84 0.12 -1.55 16 5 C -0.06 -1.56 4.71 -19.86 -0.09 -1.65 16 6 C -0.11 -2.44 8.16 22.27 0.18 -2.26 16 7 C -0.09 -1.81 9.79 22.29 0.22 -1.59 16 8 C -0.11 -2.24 6.22 22.31 0.14 -2.10 16 9 Br -0.05 -0.97 33.70 -20.37 -0.69 -1.66 16 10 C -0.09 -1.95 9.79 22.29 0.22 -1.73 16 11 C -0.12 -2.84 9.70 22.27 0.22 -2.62 16 12 C 0.45 21.38 6.89 87.66 0.60 21.98 16 13 O -0.64 -34.08 15.43 -3.05 -0.05 -34.13 16 14 N -0.46 -23.63 3.03 -658.88 -1.99 -25.62 16 15 C 0.13 6.59 8.93 127.77 1.14 7.73 16 16 C -0.35 -17.40 8.48 84.04 0.71 -16.69 16 17 H 0.12 5.42 4.76 -2.91 -0.01 5.41 16 18 C -0.01 -0.40 5.46 84.93 0.46 0.06 16 19 N -0.90 -47.19 9.76 21.66 0.21 -46.98 16 20 Si 0.99 38.48 29.56 68.60 2.03 40.50 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H 0.08 2.16 6.73 -2.39 -0.02 2.14 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 2.08 5.68 -2.39 -0.01 2.07 16 27 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.07 2.40 8.03 -2.39 -0.02 2.38 16 29 H 0.14 2.78 8.05 -2.91 -0.02 2.76 16 30 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.04 2.03 7.71 -2.39 -0.02 2.01 16 34 H 0.03 1.64 6.91 -2.39 -0.02 1.62 16 35 H 0.07 3.56 6.52 -2.38 -0.02 3.54 16 36 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -59.24 315.90 5.09 -54.15 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 1.09 Total: 20.80 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.49 Total: -7.07 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.78 Total: -72.60 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.05 Total: -34.13 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.69 Total: -1.66 kcal Total: -59.24 5.09 -54.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270861486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.534 kcal (2) G-P(sol) polarization free energy of solvation -59.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds