Wall clock time and date at job start Tue Mar 31 2020 14:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 N 1.46494 * 109.47512 * 239.99621 * 2 1 3 5 5 C 1.46500 * 120.00040 * 243.06015 * 4 2 1 6 6 C 1.50701 * 109.47305 * 94.93875 * 5 4 2 7 7 C 1.38261 * 119.99458 * 274.74281 * 6 5 4 8 8 C 1.38223 * 120.02374 * 179.72616 * 7 6 5 9 9 C 1.38244 * 120.00529 * 0.54468 * 8 7 6 10 10 C 1.38301 * 119.98958 * 359.72357 * 9 8 7 11 11 Br 1.89106 * 120.00986 * 180.02562 * 10 9 8 12 12 C 1.38196 * 119.99504 * 95.00912 * 6 5 4 13 13 C 1.34781 * 119.99826 * 63.05734 * 4 2 1 14 14 O 1.21691 * 119.99829 * 174.70358 * 13 4 2 15 15 C 1.46369 * 119.99785 * 354.69847 * 13 4 2 16 16 H 1.07997 * 120.00166 * 4.49905 * 15 13 4 17 17 C 1.40053 * 119.99656 * 184.49757 * 15 13 4 18 18 N 1.30668 * 120.00318 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99805 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46978 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46986 * 119.99794 * 19 17 15 22 22 H 1.48498 * 109.47249 * 239.99922 * 19 17 15 23 23 H 1.09002 * 109.46878 * 55.17223 * 1 2 3 24 24 H 1.09001 * 109.46971 * 175.16780 * 1 2 3 25 25 H 1.09001 * 109.46973 * 295.17215 * 1 2 3 26 26 H 1.09002 * 109.47094 * 119.99575 * 2 1 3 27 27 H 1.08999 * 109.47413 * 64.82123 * 3 2 1 28 28 H 1.09004 * 109.47106 * 184.81921 * 3 2 1 29 29 H 1.09000 * 109.47531 * 304.81233 * 3 2 1 30 30 H 1.09005 * 109.46964 * 214.93517 * 5 4 2 31 31 H 1.08996 * 109.47331 * 334.93257 * 5 4 2 32 32 H 1.08000 * 119.99113 * 359.97438 * 7 6 5 33 33 H 1.07994 * 120.00083 * 180.26632 * 8 7 6 34 34 H 1.07997 * 120.00310 * 179.75201 * 9 8 7 35 35 H 1.08002 * 120.00957 * 359.97438 * 12 6 5 36 36 H 0.96996 * 120.00319 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.8045 -1.9196 -1.0626 6 6 1.8936 -3.1142 -1.1822 7 6 1.2226 -3.5859 -0.0692 8 6 0.3825 -4.6780 -0.1794 9 6 0.2217 -5.3061 -1.4004 10 6 0.8970 -4.8379 -2.5128 11 35 0.6768 -5.6962 -4.1835 12 6 1.7333 -3.7413 -2.4032 13 6 1.7445 -0.1954 -2.4193 14 8 2.2297 -0.7131 -3.4079 15 6 0.8633 0.9650 -2.5584 16 1 0.4909 1.4689 -1.6788 17 6 0.5030 1.4218 -3.8324 18 7 0.9539 0.8125 -4.8967 19 14 -0.6211 2.9032 -4.0101 20 1 -0.9889 3.4098 -2.6635 21 1 0.0829 3.9711 -4.7648 22 1 -1.8502 2.5069 -4.7432 23 1 -0.3633 0.5869 -0.8436 24 1 -0.3633 -1.0240 -0.0866 25 1 -0.3633 0.4371 0.9301 26 1 1.8933 -0.5138 0.8900 27 1 1.7489 1.9308 0.9300 28 1 3.1266 1.4437 -0.0863 29 1 1.6080 1.9806 -0.8437 30 1 3.5575 -1.9566 -1.8499 31 1 3.2955 -1.9330 -0.0895 32 1 1.3517 -3.0985 0.8859 33 1 -0.1448 -5.0435 0.6893 34 1 -0.4316 -6.1618 -1.4856 35 1 2.2605 -3.3752 -3.2718 36 1 0.7041 1.1287 -5.7790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274673204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:48 Heat of formation + Delta-G solvation = 1.735287 kcal Electronic energy + Delta-G solvation = -20233.497598 eV Core-core repulsion = 17150.356312 eV Total energy + Delta-G solvation = -3083.141286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.29558 -37.89524 -34.77045 -33.17087 -32.28987 -31.64776 -29.68551 -28.85958 -26.80011 -26.36959 -24.97840 -22.20392 -21.58274 -20.82760 -18.56888 -16.87013 -16.50912 -15.58187 -14.99415 -14.87441 -14.69452 -14.04832 -13.62402 -13.17153 -13.05803 -12.80192 -12.50209 -12.39431 -11.94731 -11.86714 -11.40240 -11.28793 -11.16941 -11.09539 -10.88802 -10.82471 -10.56982 -10.40314 -10.39222 -10.19971 -9.97816 -9.05915 -8.85140 -8.58552 -8.38907 -7.56120 -7.27266 -6.19544 -4.60622 1.40849 1.62075 1.93284 3.10953 3.19984 3.22467 3.85165 4.10553 4.55672 4.62860 5.03264 5.12652 5.33292 5.55302 5.57531 5.64284 5.70275 5.82182 5.94165 5.99456 6.13694 6.24276 6.29095 6.37745 6.42556 6.54681 6.55418 6.58964 6.71823 6.91869 7.06879 7.13419 7.16153 7.49397 7.70592 8.11149 8.36790 9.02197 9.42358 10.57949 10.76694 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.005163 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.357515 B = 5421.588087 C = 6684.492318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.162 3.838 3 C -0.181 4.181 4 N -0.635 5.635 5 C 0.162 3.838 6 C -0.079 4.079 7 C -0.096 4.096 8 C -0.124 4.124 9 C -0.102 4.102 10 C -0.090 4.090 11 Br -0.064 7.064 12 C -0.058 4.058 13 C 0.563 3.437 14 O -0.574 6.574 15 C -0.549 4.549 16 H 0.095 0.905 17 C 0.087 3.913 18 N -0.764 5.764 19 Si 0.897 3.103 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.097 0.903 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -9.586 8.483 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.057 3.943 3 C -0.239 4.239 4 N -0.373 5.373 5 C 0.037 3.963 6 C -0.082 4.082 7 C -0.115 4.115 8 C -0.143 4.143 9 C -0.122 4.122 10 C -0.170 4.170 11 Br 0.021 6.979 12 C -0.079 4.079 13 C 0.369 3.631 14 O -0.456 6.456 15 C -0.585 4.585 16 H 0.112 0.888 17 C -0.133 4.133 18 N -0.393 5.393 19 Si 0.721 3.279 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.116 0.884 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.916 -10.181 7.088 12.439 hybrid contribution -0.707 0.865 0.354 1.172 sum -1.623 -9.316 7.441 12.033 Atomic orbital electron populations 1.22592 0.96333 1.02369 1.02556 1.20524 0.93768 0.92718 0.87300 1.22582 1.01059 0.97441 1.02809 1.48285 1.57823 1.24192 1.06956 1.19990 0.92309 0.82733 1.01228 1.20613 0.98693 0.96420 0.92465 1.21112 0.96110 0.95840 0.98466 1.21007 0.99556 0.96808 0.96928 1.20964 0.99239 1.00201 0.91813 1.21756 1.03803 0.99977 0.91426 1.96641 1.97130 1.78491 1.25604 1.21264 0.95957 0.92024 0.98620 1.18180 0.80914 0.84226 0.79769 1.90586 1.55134 1.63421 1.36426 1.21524 1.30319 1.13655 0.93002 0.88808 1.25760 0.95132 0.96677 0.95752 1.70019 1.35424 1.35553 0.98280 0.86482 0.80333 0.81856 0.79190 1.18640 1.20187 1.20234 0.88435 0.93542 0.93988 0.92561 0.93779 0.93527 0.88246 0.90197 0.91619 0.86069 0.85799 0.85785 0.84189 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 9.01 37.16 0.33 -2.85 16 2 C 0.16 2.87 3.28 -67.94 -0.22 2.65 16 3 C -0.18 -3.15 8.92 37.16 0.33 -2.82 16 4 N -0.64 -13.48 2.42 -169.13 -0.41 -13.89 16 5 C 0.16 3.00 5.53 -5.19 -0.03 2.97 16 6 C -0.08 -1.41 5.42 -104.63 -0.57 -1.97 16 7 C -0.10 -1.43 9.72 -39.58 -0.38 -1.82 16 8 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 9 C -0.10 -1.49 9.79 -39.56 -0.39 -1.88 16 10 C -0.09 -1.54 6.22 -39.52 -0.25 -1.79 16 11 Br -0.06 -1.02 33.70 -68.01 -2.29 -3.31 16 12 C -0.06 -1.12 9.42 -39.55 -0.37 -1.49 16 13 C 0.56 14.95 7.10 -12.99 -0.09 14.86 16 14 O -0.57 -17.38 14.44 5.20 0.08 -17.31 16 15 C -0.55 -14.34 6.41 -35.63 -0.23 -14.56 16 16 H 0.09 2.22 3.03 -52.49 -0.16 2.06 16 17 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 18 N -0.76 -22.20 11.84 55.55 0.66 -21.54 16 19 Si 0.90 19.52 29.56 -169.99 -5.02 14.50 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H 0.10 1.99 4.63 -51.93 -0.24 1.75 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.85 7.71 -51.93 -0.40 0.45 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.99 4.59 -51.93 -0.24 1.76 16 30 H 0.08 1.63 7.41 -51.93 -0.38 1.24 16 31 H 0.07 0.99 7.77 -51.93 -0.40 0.59 16 32 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.14 3.03 7.83 -52.49 -0.41 2.62 16 36 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -31.11 317.66 -8.89 -40.01 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.33 Total: 5.32 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.36 Total: -8.57 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.25 Total: -35.43 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.08 Total: -17.31 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -2.29 Total: -3.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.11 -8.89 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274673204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.743 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds