Wall clock time and date at job start Tue Mar 31 2020 14:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 H 1.09002 * 109.46974 * 54.99727 * 3 2 1 5 5 C 1.52996 * 109.47354 * 174.99555 * 3 2 1 6 6 C 1.50697 * 109.47153 * 184.99531 * 5 3 2 7 7 C 1.38239 * 120.00667 * 265.02273 * 6 5 3 8 8 C 1.38226 * 120.00794 * 180.02562 * 7 6 5 9 9 C 1.38259 * 120.02193 * 359.70299 * 8 7 6 10 10 C 1.38198 * 120.00968 * 0.55545 * 9 8 7 11 11 C 1.38305 * 120.00125 * 85.00466 * 6 5 3 12 12 Br 1.89093 * 120.01355 * 359.97438 * 11 6 5 13 13 N 1.46503 * 109.46927 * 294.99922 * 3 2 1 14 14 C 1.34774 * 120.00370 * 84.99794 * 13 3 2 15 15 O 1.21690 * 119.99782 * 359.97438 * 14 13 3 16 16 C 1.46369 * 120.00260 * 180.02562 * 14 13 3 17 17 H 1.07995 * 119.99962 * 359.97438 * 16 14 13 18 18 C 1.40045 * 120.00319 * 180.02562 * 16 14 13 19 19 N 1.30670 * 119.99743 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00324 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46956 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47216 * 120.00143 * 20 18 16 23 23 H 1.48498 * 109.46970 * 240.00120 * 20 18 16 24 24 H 1.09004 * 109.47330 * 300.00841 * 1 2 3 25 25 H 1.09001 * 109.47041 * 60.00353 * 1 2 3 26 26 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47703 * 239.99651 * 2 1 3 28 28 H 1.09001 * 109.47041 * 119.99647 * 2 1 3 29 29 H 1.09008 * 109.47050 * 64.99690 * 5 3 2 30 30 H 1.08998 * 109.47340 * 305.00223 * 5 3 2 31 31 H 1.07992 * 120.00018 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.98580 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.99831 * 180.27305 * 9 8 7 34 34 H 1.08002 * 120.00967 * 179.75022 * 10 9 8 35 35 H 0.96997 * 119.99423 * 265.00099 * 13 3 2 36 36 H 0.97002 * 120.00404 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 6 4.0570 2.8633 0.2492 7 6 4.4784 3.5490 -0.8747 8 6 4.9303 4.8504 -0.7614 9 6 4.9553 5.4689 0.4748 10 6 4.5393 4.7823 1.5997 11 6 4.0867 3.4798 1.4869 12 35 3.5093 2.5427 3.0245 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3422 2.6318 -0.4315 16 6 0.0478 3.3182 -2.6180 17 1 0.7376 3.3468 -3.4485 18 6 -1.2168 3.9078 -2.7376 19 7 -2.0512 3.8737 -1.7326 20 14 -1.7109 4.7429 -4.3338 21 1 -0.5955 4.6456 -5.3093 22 1 -2.9151 4.0751 -4.8898 23 1 -2.0147 6.1726 -4.0711 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0030 0.9834 -0.7595 30 1 3.8570 0.8800 1.0114 31 1 4.4553 3.0678 -1.8411 32 1 5.2598 5.3857 -1.6396 33 1 5.3044 6.4872 0.5622 34 1 4.5626 5.2641 2.5661 35 1 2.2720 2.1230 -1.9978 36 1 -2.9270 4.2824 -1.8152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274712205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:51 Heat of formation + Delta-G solvation = -46.586901 kcal Electronic energy + Delta-G solvation = -19984.678586 eV Core-core repulsion = 16899.441893 eV Total energy + Delta-G solvation = -3085.236693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63458 -39.42235 -36.70366 -34.50349 -33.53907 -32.95560 -32.57616 -30.33099 -29.19132 -27.97095 -24.96961 -23.43119 -22.57080 -21.99593 -20.95436 -19.05142 -17.59684 -17.41241 -16.88886 -16.15275 -16.12750 -15.87888 -15.47540 -14.72612 -14.41227 -14.36370 -14.22745 -13.86130 -13.57089 -13.41555 -12.98625 -12.78288 -12.65273 -12.51222 -12.40502 -12.12422 -11.98986 -11.89587 -11.84122 -11.70048 -11.54386 -11.03596 -10.87230 -9.75815 -9.63221 -9.53532 -9.18933 -8.19647 -6.74037 0.20431 0.39696 0.72207 1.40083 1.40535 1.56802 2.27225 2.59509 2.71536 3.24973 3.68487 3.81794 3.89040 4.03038 4.15548 4.35310 4.38873 4.42322 4.47568 4.59934 4.74261 4.76090 4.85412 5.00879 5.07748 5.12848 5.19532 5.30676 5.38884 5.40475 5.49692 5.55148 5.66260 5.95822 6.01230 6.36062 6.47976 6.96904 7.73035 8.62933 8.83346 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.005111 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.015541 B = 5477.060746 C = 6354.898126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 C 0.162 3.838 4 H 0.045 0.955 5 C -0.087 4.087 6 C -0.059 4.059 7 C -0.114 4.114 8 C -0.106 4.106 9 C -0.125 4.125 10 C -0.105 4.105 11 C -0.109 4.109 12 Br -0.059 7.059 13 N -0.744 5.744 14 C 0.550 3.450 15 O -0.615 6.615 16 C -0.574 4.574 17 H 0.081 0.919 18 C 0.032 3.968 19 N -0.821 5.821 20 Si 0.986 3.014 21 H -0.247 1.247 22 H -0.272 1.272 23 H -0.273 1.273 24 H 0.025 0.975 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.389 0.611 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.228 -1.226 3.748 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.056 3.944 4 H 0.063 0.937 5 C -0.125 4.125 6 C -0.061 4.061 7 C -0.133 4.133 8 C -0.124 4.124 9 C -0.144 4.144 10 C -0.125 4.125 11 C -0.188 4.188 12 Br 0.027 6.973 13 N -0.398 5.398 14 C 0.353 3.647 15 O -0.501 6.501 16 C -0.611 4.611 17 H 0.099 0.901 18 C -0.182 4.182 19 N -0.451 5.451 20 Si 0.807 3.193 21 H -0.170 1.170 22 H -0.197 1.197 23 H -0.198 1.198 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.222 0.778 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.297 -1.575 5.111 17.152 hybrid contribution -0.413 0.665 -0.952 1.233 sum 15.884 -0.910 4.159 16.445 Atomic orbital electron populations 1.21608 0.97096 0.99136 1.00950 1.21893 0.95087 0.96551 1.02456 1.20577 0.92746 0.92742 0.88303 0.93691 1.21041 0.93976 0.92512 1.04986 1.19880 0.97001 0.97199 0.91984 1.21317 0.98463 0.95512 0.97996 1.21629 0.97454 0.94639 0.98704 1.21469 0.99983 1.01009 0.91898 1.21325 0.98148 0.92299 1.00736 1.21923 1.07305 0.97240 0.92327 1.96624 1.89541 1.76036 1.35109 1.45803 1.17304 1.61596 1.15067 1.18284 0.80171 0.77755 0.88508 1.90580 1.52830 1.64062 1.42636 1.21430 1.01534 1.38572 0.99548 0.90127 1.26804 0.95752 0.94898 1.00762 1.70199 1.06622 1.35567 1.32759 0.85135 0.78973 0.77718 0.77480 1.17025 1.19714 1.19778 0.95545 0.94965 0.92921 0.90917 0.90137 0.88131 0.88563 0.83897 0.82993 0.82747 0.84220 0.77802 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.51 71.98 0.61 -4.97 16 2 C -0.12 -4.15 5.61 30.59 0.17 -3.98 16 3 C 0.16 6.03 2.23 44.99 0.10 6.13 16 4 H 0.04 2.04 7.12 -2.39 -0.02 2.03 16 5 C -0.09 -2.43 4.33 29.85 0.13 -2.30 16 6 C -0.06 -1.71 4.89 -19.85 -0.10 -1.81 16 7 C -0.11 -2.97 9.35 22.27 0.21 -2.77 16 8 C -0.11 -2.45 10.05 22.27 0.22 -2.23 16 9 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 10 C -0.11 -2.77 9.79 22.29 0.22 -2.55 16 11 C -0.11 -3.24 6.22 22.31 0.14 -3.10 16 12 Br -0.06 -1.69 31.42 -20.37 -0.64 -2.33 16 13 N -0.74 -31.73 4.62 -446.83 -2.06 -33.80 16 14 C 0.55 30.69 6.31 86.36 0.55 31.23 16 15 O -0.62 -39.59 12.15 -4.32 -0.05 -39.65 16 16 C -0.57 -32.04 9.54 24.83 0.24 -31.81 16 17 H 0.08 4.07 7.85 -2.91 -0.02 4.05 16 18 C 0.03 1.81 5.50 85.30 0.47 2.28 16 19 N -0.82 -50.40 11.83 21.83 0.26 -50.14 16 20 Si 0.99 41.31 29.56 68.60 2.03 43.34 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 25 H 0.03 1.64 5.64 -2.39 -0.01 1.63 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.10 2.28 8.05 -2.38 -0.02 2.26 16 30 H 0.10 2.45 6.89 -2.39 -0.02 2.44 16 31 H 0.14 3.17 8.00 -2.91 -0.02 3.15 16 32 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.39 14.32 8.33 -92.71 -0.77 13.55 16 36 H 0.27 15.13 8.29 -92.71 -0.77 14.36 16 Total: -1.00 -74.40 319.89 3.03 -71.37 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.32 Total: 29.71 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 3.18 Total: -18.50 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.80 Total: -83.94 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.05 Total: -39.65 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 35 Polarization: -1.69 SS G_CDS: -0.64 Total: -2.33 kcal Total: -74.40 3.03 -71.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274712205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.780 kcal (2) G-P(sol) polarization free energy of solvation -74.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds