Wall clock time and date at job start Tue Mar 31 2020 14:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47029 * 2 1 4 4 C 1.37097 * 120.00094 * 94.61975 * 3 2 1 5 5 H 1.08007 * 119.99805 * 217.87775 * 4 3 2 6 6 C 1.38946 * 120.00284 * 37.87366 * 4 3 2 7 7 N 1.31412 * 119.99982 * 19.70059 * 6 4 3 8 8 Si 1.86806 * 120.00041 * 199.69704 * 6 4 3 9 9 H 1.48499 * 109.46752 * 90.00502 * 8 6 4 10 10 H 1.48499 * 109.47085 * 209.99995 * 8 6 4 11 11 H 1.48499 * 109.46923 * 330.00180 * 8 6 4 12 12 C 1.34780 * 119.99774 * 274.88942 * 3 2 1 13 13 O 1.21288 * 119.99673 * 179.72632 * 12 3 2 14 14 C 1.50702 * 119.99726 * 359.72911 * 12 3 2 15 15 C 1.50705 * 109.46413 * 179.97438 * 14 12 3 16 16 C 1.38266 * 119.99212 * 90.00138 * 15 14 12 17 17 C 1.38218 * 120.01740 * 179.97438 * 16 15 14 18 18 C 1.38239 * 120.01226 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00704 * 179.97438 * 18 17 16 20 20 C 1.38306 * 119.98804 * 359.97438 * 18 17 16 21 21 Br 1.89101 * 120.01205 * 179.97438 * 20 18 17 22 22 C 1.38189 * 119.99434 * 269.71637 * 15 14 12 23 23 H 1.09002 * 109.46959 * 300.00151 * 1 2 3 24 24 H 1.08995 * 109.46699 * 60.00501 * 1 2 3 25 25 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46989 * 239.99307 * 2 1 3 27 27 H 1.09007 * 109.46814 * 119.99883 * 2 1 3 28 28 H 0.96995 * 120.00135 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46845 * 299.99444 * 14 12 3 30 30 H 1.08993 * 109.47428 * 59.99797 * 14 12 3 31 31 H 1.08003 * 119.99172 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.99449 * 180.02562 * 17 16 15 33 33 H 1.08992 * 109.47074 * 90.00000 * 19 18 17 34 34 H 1.09004 * 109.46860 * 210.00229 * 19 18 17 35 35 H 1.09002 * 109.47040 * 329.99656 * 19 18 17 36 36 H 1.07998 * 120.00532 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3370 1.9956 1.1834 5 1 2.1079 3.0412 1.3278 6 6 2.9546 1.2733 2.1971 7 7 3.5777 0.1505 1.9179 8 14 2.8992 1.8984 3.9566 9 1 1.6984 1.3521 4.6383 10 1 4.1207 1.4578 4.6770 11 1 2.8346 3.3820 3.9530 12 6 2.1492 2.0497 -1.1630 13 8 2.5487 3.1949 -1.1626 14 6 1.7989 1.3742 -2.4638 15 6 2.0315 2.3307 -3.6049 16 6 3.2650 2.3767 -4.2278 17 6 3.4787 3.2534 -5.2748 18 6 2.4594 4.0851 -5.6993 19 6 2.6927 5.0414 -6.8404 20 6 1.2253 4.0394 -5.0765 21 35 -0.1694 5.1773 -5.6561 22 6 1.0101 3.1575 -4.0324 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8901 28 1 4.0091 -0.3536 2.6255 29 1 2.4254 0.4920 -2.5953 30 1 0.7506 1.0763 -2.4478 31 1 4.0618 1.7274 -3.8962 32 1 4.4423 3.2887 -5.7613 33 1 2.4396 4.5529 -7.7813 34 1 2.0662 5.9236 -6.7090 35 1 3.7411 5.3393 -6.8562 36 1 0.0453 3.1186 -3.5485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275402961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:22 Heat of formation + Delta-G solvation = -29.926727 kcal Electronic energy + Delta-G solvation = -19479.557880 eV Core-core repulsion = 16395.043627 eV Total energy + Delta-G solvation = -3084.514254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96360 -39.85969 -36.89920 -34.94465 -33.94883 -33.06216 -31.15758 -30.66753 -30.32387 -27.34880 -25.77518 -23.90378 -23.55237 -22.09001 -20.52918 -18.70942 -17.76248 -17.10397 -17.00679 -16.69324 -16.08899 -15.67126 -15.57432 -14.94314 -14.51441 -14.45871 -14.39824 -13.82322 -13.71612 -13.52798 -13.27871 -13.01647 -12.86084 -12.74150 -12.64620 -12.33079 -12.16028 -12.10234 -11.98207 -11.76865 -11.75494 -11.08590 -10.87014 -10.37947 -9.74558 -9.44298 -9.40058 -8.32668 -6.05938 0.15681 0.32343 0.63241 1.37492 1.41170 1.52393 2.08598 2.29450 2.58719 3.02573 3.21478 3.69212 3.81657 3.97936 4.16357 4.20284 4.26827 4.39746 4.44709 4.64293 4.64930 4.68858 4.76680 4.80477 4.90624 4.94969 5.07150 5.18564 5.26417 5.33770 5.44048 5.47113 5.58049 5.59531 5.89842 6.24179 6.57247 7.21319 7.50317 8.11066 8.69899 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.003355 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.466832 B = 8343.677395 C = 8558.659306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.096 3.904 3 N -0.455 5.455 4 C -0.340 4.340 5 H 0.058 0.942 6 C 0.006 3.994 7 N -0.889 5.889 8 Si 0.978 3.022 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.451 3.549 13 O -0.624 6.624 14 C -0.087 4.087 15 C -0.067 4.067 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.071 4.071 19 C -0.119 4.119 20 C -0.105 4.105 21 Br -0.046 7.046 22 C -0.090 4.090 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.273 0.727 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 1.921 -17.052 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.174 5.174 4 C -0.468 4.468 5 H 0.076 0.924 6 C -0.197 4.197 7 N -0.527 5.527 8 Si 0.802 3.198 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.241 3.759 13 O -0.510 6.510 14 C -0.127 4.127 15 C -0.069 4.069 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.073 4.073 19 C -0.175 4.175 20 C -0.184 4.184 21 Br 0.040 6.960 22 C -0.110 4.110 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.997 2.734 -17.146 18.369 hybrid contribution 0.399 -0.040 1.453 1.507 sum -5.598 2.694 -15.693 16.878 Atomic orbital electron populations 1.22119 0.95427 1.02512 1.01250 1.21656 0.93969 0.83492 1.03623 1.43767 1.56244 1.13042 1.04369 1.19323 1.39412 0.96277 0.91775 0.92403 1.26037 0.93364 0.96651 1.03608 1.69971 1.31228 1.16973 1.34487 0.85176 0.78336 0.78378 0.77935 1.18721 1.20085 1.20305 1.21091 0.81246 0.87540 0.86036 1.90502 1.51981 1.20755 1.87768 1.20655 1.04783 0.97923 0.89305 1.19498 0.94293 0.97499 0.95574 1.21365 0.96098 0.99001 0.95468 1.21273 0.99657 0.95309 0.97061 1.20123 0.91443 0.97805 0.97927 1.21004 1.03930 0.97390 0.95168 1.21776 0.94517 1.00635 1.01464 1.96585 1.46187 1.63823 1.89408 1.20973 0.99774 0.94806 0.95442 0.94257 0.92604 0.89632 0.91177 0.89769 0.91736 0.87239 0.87123 0.85074 0.82452 0.89067 0.90954 0.89540 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.15 71.98 0.73 -4.45 16 2 C 0.10 3.98 5.43 86.38 0.47 4.45 16 3 N -0.45 -23.09 2.53 -635.53 -1.61 -24.70 16 4 C -0.34 -19.37 8.91 84.04 0.75 -18.62 16 5 H 0.06 3.57 7.76 -2.91 -0.02 3.55 16 6 C 0.01 0.31 4.95 84.93 0.42 0.74 16 7 N -0.89 -47.57 11.45 21.66 0.25 -47.32 16 8 Si 0.98 42.57 29.60 68.60 2.03 44.60 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.45 22.12 7.59 87.66 0.67 22.79 16 13 O -0.62 -36.19 15.90 -3.06 -0.05 -36.24 16 14 C -0.09 -3.09 4.43 29.10 0.13 -2.96 16 15 C -0.07 -2.31 4.37 -19.87 -0.09 -2.40 16 16 C -0.10 -3.14 9.70 22.27 0.22 -2.92 16 17 C -0.11 -2.99 9.70 22.27 0.22 -2.77 16 18 C -0.07 -1.85 5.88 -19.85 -0.12 -1.97 16 19 C -0.12 -2.22 9.55 71.24 0.68 -1.53 16 20 C -0.10 -3.08 6.22 22.31 0.14 -2.94 16 21 Br -0.05 -1.13 31.79 -20.37 -0.65 -1.78 16 22 C -0.09 -2.96 9.44 22.29 0.21 -2.75 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.70 6.65 -2.39 -0.02 1.69 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.07 2.55 6.64 -2.39 -0.02 2.53 16 27 H 0.08 3.95 5.54 -2.38 -0.01 3.93 16 28 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.11 3.46 7.36 -2.39 -0.02 3.44 16 30 H 0.11 3.37 6.53 -2.39 -0.02 3.35 16 31 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.39 6.65 -2.38 -0.02 1.38 16 35 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 36 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -68.96 321.04 5.48 -63.48 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.09 Total: 17.30 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.42 Total: -15.34 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.36 Total: -72.02 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.05 Total: -36.24 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 35 Polarization: -1.13 SS G_CDS: -0.65 Total: -1.78 kcal Total: -68.96 5.48 -63.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275402961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.551 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds