Wall clock time and date at job start Tue Mar 31 2020 15:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47077 * 300.00024 * 3 2 1 6 6 H 1.48500 * 109.47130 * 59.99919 * 3 2 1 7 7 C 1.37880 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 N 1.65599 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.46497 * 120.00110 * 65.00280 * 14 11 10 16 16 C 1.50700 * 109.47441 * 164.99452 * 15 14 11 17 17 C 1.38848 * 119.70497 * 269.73005 * 16 15 14 18 18 C 1.37467 * 120.18334 * 179.73823 * 17 16 15 19 19 C 1.39855 * 120.17841 * 0.53465 * 18 17 16 20 20 S 1.75896 * 130.56137 * 179.71818 * 19 18 17 21 21 C 1.75299 * 92.19671 * 180.02562 * 20 19 18 22 22 C 1.31820 * 111.39737 * 0.02562 * 21 20 19 23 23 C 1.39749 * 119.75930 * 359.73822 * 19 18 17 24 24 C 1.36092 * 119.69871 * 89.99781 * 16 15 14 25 25 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 27 27 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 28 28 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 29 29 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 30 30 H 0.96999 * 120.00046 * 244.99555 * 14 11 10 31 31 H 1.09002 * 109.47077 * 285.00304 * 15 14 11 32 32 H 1.09005 * 109.47050 * 44.99641 * 15 14 11 33 33 H 1.07992 * 119.90718 * 359.97438 * 17 16 15 34 34 H 1.07998 * 119.91087 * 180.29318 * 18 17 16 35 35 H 1.07997 * 124.29545 * 180.02562 * 21 20 19 36 36 H 1.08004 * 122.54702 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.77685 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6647 -5.4194 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.4197 -6.5229 1.1497 16 6 4.1396 -7.8448 1.0772 17 6 3.5854 -8.9643 1.6833 18 6 4.2310 -10.1762 1.6186 19 6 5.4553 -10.2858 0.9514 20 16 6.5055 -11.6759 0.7093 21 6 7.6692 -10.7246 -0.1929 22 6 7.2866 -9.4673 -0.2951 23 6 6.0182 -9.1594 0.3453 24 6 5.3299 -7.9293 0.4228 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 2.6175 -6.9859 -0.7608 31 1 4.1474 -5.7114 1.1354 32 1 2.8402 -6.4749 2.0717 33 1 2.6426 -8.8836 2.2037 34 1 3.7936 -11.0451 2.0876 35 1 8.5834 -11.1186 -0.6116 36 1 7.8708 -8.7226 -0.8153 37 1 5.7513 -7.0490 -0.0399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290105930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:33 Heat of formation + Delta-G solvation = -40.003233 kcal Electronic energy + Delta-G solvation = -21715.677308 eV Core-core repulsion = 18289.950367 eV Total energy + Delta-G solvation = -3425.726941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04057 -36.71556 -36.37607 -35.44881 -34.46366 -33.90353 -31.27739 -31.17282 -29.74994 -26.00506 -25.61348 -23.60179 -22.71381 -21.68619 -20.37476 -18.96533 -18.37935 -17.48977 -16.69182 -16.38036 -16.13886 -15.59434 -15.38457 -14.95706 -14.64489 -14.55024 -14.20450 -13.99772 -13.79708 -13.43813 -13.17633 -12.71308 -12.52238 -12.29603 -11.76553 -11.66237 -11.60799 -11.51452 -11.48782 -11.35383 -11.10518 -10.96993 -10.93872 -10.42181 -10.39967 -9.97138 -9.82247 -9.51972 -9.05143 -8.83653 -8.51783 -8.05796 -6.13709 -4.19225 0.39588 0.66583 0.96378 1.18512 1.64044 1.94946 3.07750 3.24427 3.31802 3.34941 3.47756 4.15260 4.22607 4.36185 4.44492 4.45937 4.70802 4.84599 4.91569 5.00058 5.20747 5.21745 5.27846 5.41656 5.43940 5.58060 5.61445 5.65807 5.72068 5.86543 5.96584 6.04825 6.27729 6.47243 6.51951 7.05464 7.29282 7.35282 7.79491 8.16265 8.84498 9.45667 10.97352 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.002442 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.103594 B =11464.264577 C =12254.594181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.593 3.407 12 O -0.966 6.966 13 O -0.966 6.966 14 N -1.125 6.125 15 C 0.156 3.844 16 C -0.091 4.091 17 C -0.082 4.082 18 C -0.087 4.087 19 C -0.134 4.134 20 S 0.075 5.925 21 C -0.194 4.194 22 C -0.114 4.114 23 C -0.082 4.082 24 C -0.061 4.061 25 H 0.264 0.736 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.414 0.586 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.027 -22.121 1.851 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.690 3.310 12 O -0.957 6.957 13 O -0.956 6.956 14 N -0.882 5.882 15 C 0.030 3.970 16 C -0.094 4.094 17 C -0.103 4.103 18 C -0.109 4.109 19 C -0.249 4.249 20 S 0.339 5.661 21 C -0.328 4.328 22 C -0.144 4.144 23 C -0.090 4.090 24 C -0.081 4.081 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.247 0.753 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.185 0.815 36 H 0.164 0.836 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.926 -23.636 2.407 27.539 hybrid contribution 1.292 2.375 -0.801 2.819 sum 15.218 -21.261 1.606 26.196 Atomic orbital electron populations 1.69966 1.06113 1.27098 1.49649 1.25077 0.94976 0.99569 0.94927 0.86415 0.79913 0.83192 0.77765 1.19656 1.20810 1.20801 1.21038 0.93084 0.89761 1.52021 0.91993 1.18972 0.92713 0.90572 0.98934 1.30448 1.13726 1.18019 1.10092 1.05574 0.74656 0.76590 0.74149 1.93559 1.71532 1.85311 1.45252 1.93539 1.71384 1.84991 1.45696 1.55890 1.52775 1.52351 1.27159 1.20205 0.92757 0.94219 0.89850 1.19402 0.95209 0.95581 0.99222 1.21099 0.99640 0.91393 0.98172 1.20475 0.92784 0.98359 0.99322 1.22753 1.00205 0.97103 1.04858 1.84164 1.14426 1.10659 1.56891 1.25038 1.04239 0.97474 1.06037 1.20988 0.95361 0.96719 1.01300 1.19304 0.95294 0.93754 1.00609 1.20678 0.93967 0.96034 0.97465 0.92575 0.94825 0.94772 0.86273 0.86050 0.75322 0.90570 0.89032 0.84531 0.85310 0.81519 0.83550 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.76 6.01 37.16 0.22 -10.54 16 11 S 2.59 44.32 5.46 -107.50 -0.59 43.73 16 12 O -0.97 -19.65 18.08 -57.54 -1.04 -20.69 16 13 O -0.97 -19.24 17.50 -57.54 -1.01 -20.25 16 14 N -1.12 -13.76 5.88 -11.66 -0.07 -13.83 16 15 C 0.16 1.62 6.23 -5.20 -0.03 1.59 16 16 C -0.09 -0.89 5.23 -105.17 -0.55 -1.44 16 17 C -0.08 -0.77 9.67 -39.64 -0.38 -1.16 16 18 C -0.09 -0.80 10.07 -39.26 -0.40 -1.20 16 19 C -0.13 -1.31 6.48 -38.41 -0.25 -1.56 16 20 S 0.08 0.62 23.23 -107.50 -2.50 -1.88 16 21 C -0.19 -1.41 11.02 28.84 0.32 -1.09 16 22 C -0.11 -0.91 10.39 -38.64 -0.40 -1.31 16 23 C -0.08 -0.80 6.04 -105.38 -0.64 -1.43 16 24 C -0.06 -0.57 9.66 -39.24 -0.38 -0.95 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 29 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 30 H 0.41 4.48 8.61 -34.47 -0.30 4.19 16 31 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.09 0.97 7.63 -51.93 -0.40 0.57 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -35.26 347.86 -11.74 -47.00 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.46 Total: 1.77 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -3.04 Total: -31.52 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.67 Total: -39.39 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -2.05 Total: -40.94 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 44.94 SS G_CDS: -3.08 Total: 41.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.26 -11.74 -47.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290105930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.993 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds