Wall clock time and date at job start Tue Mar 31 2020 15:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47077 * 300.00024 * 3 2 1 6 6 H 1.48500 * 109.47130 * 59.99919 * 3 2 1 7 7 C 1.37880 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 N 1.65599 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.46497 * 120.00110 * 65.00280 * 14 11 10 16 16 C 1.50700 * 109.47441 * 164.99452 * 15 14 11 17 17 C 1.38848 * 119.70497 * 269.73005 * 16 15 14 18 18 C 1.37467 * 120.18334 * 179.73823 * 17 16 15 19 19 C 1.39855 * 120.17841 * 0.53465 * 18 17 16 20 20 S 1.75896 * 130.56137 * 179.71818 * 19 18 17 21 21 C 1.75299 * 92.19671 * 180.02562 * 20 19 18 22 22 C 1.31820 * 111.39737 * 0.02562 * 21 20 19 23 23 C 1.39749 * 119.75930 * 359.73822 * 19 18 17 24 24 C 1.36092 * 119.69871 * 89.99781 * 16 15 14 25 25 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 27 27 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 28 28 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 29 29 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 30 30 H 0.96999 * 120.00046 * 244.99555 * 14 11 10 31 31 H 1.09002 * 109.47077 * 285.00304 * 15 14 11 32 32 H 1.09005 * 109.47050 * 44.99641 * 15 14 11 33 33 H 1.07992 * 119.90718 * 359.97438 * 17 16 15 34 34 H 1.07998 * 119.91087 * 180.29318 * 18 17 16 35 35 H 1.07997 * 124.29545 * 180.02562 * 21 20 19 36 36 H 1.08004 * 122.54702 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.77685 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6647 -5.4194 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.4197 -6.5229 1.1497 16 6 4.1396 -7.8448 1.0772 17 6 3.5854 -8.9643 1.6833 18 6 4.2310 -10.1762 1.6186 19 6 5.4553 -10.2858 0.9514 20 16 6.5055 -11.6759 0.7093 21 6 7.6692 -10.7246 -0.1929 22 6 7.2866 -9.4673 -0.2951 23 6 6.0182 -9.1594 0.3453 24 6 5.3299 -7.9293 0.4228 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 2.6175 -6.9859 -0.7608 31 1 4.1474 -5.7114 1.1354 32 1 2.8402 -6.4749 2.0717 33 1 2.6426 -8.8836 2.2037 34 1 3.7936 -11.0451 2.0876 35 1 8.5834 -11.1186 -0.6116 36 1 7.8708 -8.7226 -0.8153 37 1 5.7513 -7.0490 -0.0399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290105930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:33 Heat of formation + Delta-G solvation = -63.983328 kcal Electronic energy + Delta-G solvation = -21716.717163 eV Core-core repulsion = 18289.950367 eV Total energy + Delta-G solvation = -3426.766796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71133 -38.14399 -37.24780 -36.95061 -35.86285 -35.26678 -33.09082 -32.03747 -30.41315 -27.56196 -26.82265 -24.23385 -23.58005 -23.38197 -21.05151 -20.28904 -19.11323 -18.98365 -18.25181 -17.45284 -17.12962 -16.89122 -16.51107 -16.22886 -16.05892 -15.54489 -15.02626 -14.85710 -14.66429 -14.49211 -14.42946 -14.02963 -13.68378 -13.55886 -13.17665 -13.14311 -13.07127 -12.93374 -12.74778 -12.47313 -12.21484 -12.14863 -12.11128 -12.07965 -11.70594 -11.60076 -11.15583 -10.63750 -10.63474 -10.36030 -9.50961 -8.69303 -8.24210 -6.37686 -0.67635 -0.23572 0.17355 0.56719 1.04288 1.33356 1.42701 1.42936 1.56216 1.92035 2.39592 2.70741 2.85600 3.09641 3.30279 3.53279 3.71926 3.84466 4.04487 4.18541 4.20900 4.27793 4.35702 4.48510 4.61688 4.77863 4.79526 4.82128 4.89360 4.99838 5.08285 5.26447 5.31713 5.32720 5.43571 5.57066 5.71259 5.84811 6.08414 6.11453 6.76858 7.32503 8.88250 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.002442 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.103594 B =11464.264577 C =12254.594181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.018 3.982 10 C -0.587 4.587 11 S 2.622 3.378 12 O -1.001 7.001 13 O -0.996 6.996 14 N -1.105 6.105 15 C 0.147 3.853 16 C -0.097 4.097 17 C -0.093 4.093 18 C -0.094 4.094 19 C -0.154 4.154 20 S 0.074 5.926 21 C -0.190 4.190 22 C -0.125 4.125 23 C -0.097 4.097 24 C -0.062 4.062 25 H 0.266 0.734 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.423 0.577 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.194 0.806 36 H 0.168 0.832 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.949 -22.441 1.677 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.096 0.904 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.719 3.281 12 O -0.992 6.992 13 O -0.986 6.986 14 N -0.866 5.866 15 C 0.022 3.978 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.270 4.270 20 S 0.337 5.663 21 C -0.323 4.323 22 C -0.155 4.155 23 C -0.105 4.105 24 C -0.083 4.083 25 H 0.075 0.925 26 H 0.023 0.977 27 H 0.026 0.974 28 H 0.165 0.835 29 H 0.163 0.837 30 H 0.259 0.741 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.211 0.789 36 H 0.185 0.815 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.862 -23.965 2.228 29.387 hybrid contribution 0.442 2.329 -0.732 2.481 sum 17.304 -21.636 1.496 27.745 Atomic orbital electron populations 1.70112 1.08086 1.28186 1.51138 1.26125 0.95842 1.03911 0.94543 0.85270 0.79253 0.78086 0.77662 1.17769 1.20584 1.20503 1.21566 0.94054 0.90737 1.51071 0.90423 1.18838 0.93705 0.93163 0.96381 1.30334 1.12763 1.16148 1.12673 1.04411 0.74607 0.76468 0.72629 1.93505 1.73097 1.85853 1.46708 1.93499 1.72708 1.85453 1.46930 1.55382 1.52199 1.50769 1.28293 1.20475 0.92860 0.95702 0.88727 1.19340 0.95562 0.95157 1.00008 1.21259 1.00045 0.91639 0.98509 1.20678 0.92816 0.98816 0.99294 1.23043 1.00734 0.97977 1.05217 1.84156 1.14576 1.10469 1.57097 1.25403 1.04666 0.97100 1.05173 1.21227 0.95038 0.97561 1.01651 1.19643 0.96139 0.93884 1.00845 1.20888 0.93703 0.96641 0.97061 0.92480 0.97673 0.97397 0.83520 0.83723 0.74084 0.88040 0.89252 0.84027 0.84015 0.78891 0.81500 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.57 13.29 21.45 0.28 -56.29 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 4 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.54 -29.01 9.11 25.60 0.23 -28.78 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.02 0.92 4.98 29.85 0.15 1.07 16 10 C -0.59 -20.73 6.01 71.99 0.43 -20.30 16 11 S 2.62 88.46 5.46 -56.49 -0.31 88.15 16 12 O -1.00 -40.96 18.08 -127.65 -2.31 -43.27 16 13 O -1.00 -39.79 17.50 -127.65 -2.23 -42.02 16 14 N -1.11 -25.15 5.88 -190.79 -1.12 -26.27 16 15 C 0.15 2.76 6.23 85.63 0.53 3.29 16 16 C -0.10 -1.73 5.23 -20.22 -0.11 -1.83 16 17 C -0.09 -1.68 9.67 22.23 0.22 -1.46 16 18 C -0.09 -1.64 10.07 22.48 0.23 -1.42 16 19 C -0.15 -2.85 6.48 23.03 0.15 -2.70 16 20 S 0.07 1.11 23.23 -56.49 -1.31 -0.21 16 21 C -0.19 -2.31 11.02 67.04 0.74 -1.57 16 22 C -0.13 -1.71 10.39 23.33 0.24 -1.47 16 23 C -0.10 -1.71 6.04 -20.35 -0.12 -1.84 16 24 C -0.06 -1.03 9.66 22.49 0.22 -0.81 16 25 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 26 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.15 4.32 8.14 -2.39 -0.02 4.30 16 29 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 30 H 0.42 8.41 8.61 -96.75 -0.83 7.57 16 31 H 0.10 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.09 1.75 7.63 -2.38 -0.02 1.73 16 33 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -77.05 347.86 -1.34 -78.39 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.26 Total: 14.43 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 3.37 Total: -57.70 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -0.84 Total: -82.56 kcal Atomic # 8 Polarization: -80.75 SS G_CDS: -4.54 Total: -85.29 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 89.56 SS G_CDS: -1.62 Total: 87.94 kcal Total: -77.05 -1.34 -78.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290105930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.408 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds