Wall clock time and date at job start Tue Mar 31 2020 14:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47327 * 2 1 4 4 N 1.46503 * 109.46756 * 119.99739 * 2 1 3 5 5 C 1.34773 * 119.99930 * 274.99625 * 4 2 1 6 6 O 1.21281 * 119.99988 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99995 * 179.97438 * 5 4 2 8 8 C 1.52993 * 109.47119 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.46979 * 180.02562 * 8 7 5 10 10 H 1.08004 * 120.00483 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99996 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00067 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99801 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47204 * 90.00378 * 13 11 9 15 15 H 1.48502 * 109.46964 * 209.99657 * 13 11 9 16 16 H 1.48496 * 109.47424 * 330.00022 * 13 11 9 17 17 C 1.50706 * 109.47379 * 239.99484 * 2 1 3 18 18 C 1.38246 * 119.98595 * 99.99882 * 17 2 1 19 19 C 1.38215 * 120.00664 * 180.02562 * 18 17 2 20 20 C 1.38330 * 119.99152 * 359.97438 * 19 18 17 21 21 Br 1.89100 * 120.00875 * 179.97438 * 20 19 18 22 22 C 1.38320 * 119.97711 * 0.27274 * 20 19 18 23 23 C 1.38218 * 119.99430 * 359.46849 * 22 20 19 24 24 H 1.08991 * 109.47317 * 300.00240 * 1 2 3 25 25 H 1.09007 * 109.46712 * 60.00331 * 1 2 3 26 26 H 1.08995 * 109.47393 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99664 * 95.00363 * 4 2 1 28 28 H 1.08999 * 109.47207 * 300.00542 * 7 5 4 29 29 H 1.09001 * 109.46770 * 60.00344 * 7 5 4 30 30 H 1.09008 * 109.47038 * 300.00344 * 8 7 5 31 31 H 1.09001 * 109.47469 * 60.00221 * 8 7 5 32 32 H 0.96995 * 120.00489 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.99777 * 0.02620 * 18 17 2 34 34 H 1.07998 * 120.00665 * 180.02562 * 19 18 17 35 35 H 1.08005 * 120.00516 * 179.70850 * 22 20 19 36 36 H 1.07997 * 120.00216 * 180.27935 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1585 2.4116 7 6 2.6487 -0.7287 3.5879 8 6 2.6997 0.2543 4.7591 9 6 3.2020 -0.4560 5.9895 10 1 3.4587 -1.5040 5.9412 11 6 3.3338 0.2319 7.1772 12 7 3.0217 1.5081 7.2361 13 14 3.9558 -0.6488 8.7026 14 1 5.4358 -0.5447 8.7655 15 1 3.3638 -0.0223 9.9118 16 1 3.5622 -2.0795 8.6433 17 6 2.0324 -0.7105 -1.2304 18 6 2.4587 0.0196 -2.3242 19 6 2.9191 -0.6317 -3.4531 20 6 2.9537 -2.0141 -3.4881 21 35 3.5828 -2.9055 -5.0326 22 6 2.5222 -2.7441 -2.3954 23 6 2.0670 -2.0921 -1.2649 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 2.2489 -1.6317 1.1527 28 1 1.9758 -1.5505 3.8327 29 1 3.6478 -1.1213 3.3988 30 1 3.3725 1.0764 4.5144 31 1 1.7004 0.6466 4.9481 32 1 3.1148 1.9922 8.0714 33 1 2.4321 1.0989 -2.2966 34 1 3.2526 -0.0613 -4.3074 35 1 2.5446 -3.8236 -2.4240 36 1 1.7343 -2.6619 -0.4099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290894560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:43 Heat of formation + Delta-G solvation = -48.606689 kcal Electronic energy + Delta-G solvation = -18596.618054 eV Core-core repulsion = 15511.293776 eV Total energy + Delta-G solvation = -3085.324278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21353 -40.06458 -36.74202 -35.52796 -33.56846 -32.86370 -32.10090 -31.49037 -29.42712 -27.70766 -24.93284 -24.10666 -23.37654 -21.62882 -21.11565 -18.91633 -18.15778 -17.46463 -16.82761 -16.50710 -16.40403 -16.19905 -15.71768 -14.95645 -14.87465 -14.46849 -14.38624 -14.26026 -14.11770 -13.61888 -13.25506 -13.19699 -12.81386 -12.69453 -12.47477 -12.26729 -11.94048 -11.88261 -11.75878 -11.61962 -11.29255 -11.26957 -10.73027 -10.56108 -10.15818 -10.03630 -9.61389 -8.17161 -6.30945 -0.01274 0.29172 0.62232 1.42854 1.45382 1.56271 1.73113 2.20061 2.44612 2.60905 3.15932 3.48716 3.74481 3.92639 4.04533 4.19161 4.24825 4.36777 4.44146 4.52477 4.58215 4.64272 4.70912 4.88000 4.96669 5.09795 5.13235 5.18070 5.23506 5.36341 5.50698 5.60706 5.65263 5.75599 5.86987 6.18969 6.59491 6.87828 7.35056 7.39452 8.95473 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.002165 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.264966 B =12930.459165 C =13566.699100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 H 0.076 0.924 4 N -0.715 5.715 5 C 0.515 3.485 6 O -0.584 6.584 7 C -0.120 4.120 8 C 0.042 3.958 9 C -0.542 4.542 10 H 0.076 0.924 11 C -0.008 4.008 12 N -0.938 5.938 13 Si 0.973 3.027 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.255 1.255 17 C -0.076 4.076 18 C -0.108 4.108 19 C -0.091 4.091 20 C -0.102 4.102 21 Br -0.051 7.051 22 C -0.088 4.088 23 C -0.108 4.108 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.414 0.586 28 H 0.106 0.894 29 H 0.103 0.897 30 H -0.018 1.018 31 H -0.017 1.017 32 H 0.262 0.738 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -12.692 -28.751 31.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.075 3.925 3 H 0.094 0.906 4 N -0.369 5.369 5 C 0.303 3.697 6 O -0.464 6.464 7 C -0.160 4.160 8 C 0.004 3.996 9 C -0.580 4.580 10 H 0.094 0.906 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.797 3.203 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.179 1.179 17 C -0.077 4.077 18 C -0.127 4.127 19 C -0.110 4.110 20 C -0.181 4.181 21 Br 0.034 6.966 22 C -0.108 4.108 23 C -0.127 4.127 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.252 0.748 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.000 1.000 31 H 0.001 0.999 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.145 -12.061 -29.197 31.610 hybrid contribution 0.177 0.134 1.254 1.273 sum -0.968 -11.926 -27.943 30.397 Atomic orbital electron populations 1.22113 0.93378 1.03252 1.02335 1.19772 0.94872 0.96164 0.81679 0.90562 1.46074 1.67824 1.14559 1.08492 1.21293 0.76017 0.86864 0.85496 1.90658 1.51447 1.18553 1.85719 1.21646 1.03170 0.99817 0.91360 1.18684 0.94817 0.93687 0.92365 1.21726 1.43841 0.97309 0.95141 0.90602 1.26135 0.95673 0.95580 1.03107 1.70172 1.49646 1.10283 1.27685 0.85334 0.78419 0.79058 0.77514 1.19772 1.21237 1.17864 1.20014 0.98412 0.94503 0.94806 1.21217 0.98056 1.01126 0.92332 1.21278 0.98242 0.92448 0.99052 1.22006 1.06281 0.95366 0.94463 1.96737 1.87317 1.77813 1.34696 1.21312 0.96849 1.01172 0.91454 1.21158 0.99374 0.93379 0.98742 0.94009 0.90013 0.90687 0.74827 0.87627 0.87881 0.99996 0.99852 0.92884 0.83909 0.83499 0.83169 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.46 71.98 0.68 -2.54 16 2 C 0.18 4.10 2.78 44.25 0.12 4.22 16 3 H 0.08 2.10 7.44 -2.39 -0.02 2.08 16 4 N -0.72 -18.18 5.03 -446.08 -2.24 -20.42 16 5 C 0.51 19.21 7.79 87.66 0.68 19.89 16 6 O -0.58 -27.86 15.64 -3.03 -0.05 -27.91 16 7 C -0.12 -4.71 5.64 29.85 0.17 -4.54 16 8 C 0.04 2.33 4.26 29.84 0.13 2.45 16 9 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 10 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 11 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 12 N -0.94 -59.49 13.29 21.45 0.28 -59.20 16 13 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.25 -10.70 7.11 99.48 0.71 -10.00 16 17 C -0.08 -1.35 4.96 -19.86 -0.10 -1.45 16 18 C -0.11 -1.76 9.67 22.27 0.22 -1.55 16 19 C -0.09 -1.36 9.79 22.29 0.22 -1.14 16 20 C -0.10 -1.57 6.22 22.31 0.14 -1.43 16 21 Br -0.05 -0.74 33.70 -20.37 -0.69 -1.42 16 22 C -0.09 -1.24 9.79 22.28 0.22 -1.02 16 23 C -0.11 -1.56 9.06 22.27 0.20 -1.36 16 24 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.41 7.61 6.87 -92.71 -0.64 6.98 16 28 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 29 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 30 H -0.02 -1.15 8.10 -2.38 -0.02 -1.17 16 31 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.14 2.02 8.04 -2.91 -0.02 1.99 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.15 1.59 6.91 -2.91 -0.02 1.57 16 Total: -1.00 -75.00 330.83 3.15 -71.84 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.45 Total: 9.83 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 3.37 Total: -18.90 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.96 Total: -79.62 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -0.69 Total: -1.42 kcal Total: -75.00 3.15 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290894560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.238 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds