Wall clock time and date at job start Tue Mar 31 2020 14:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38235 * 119.99147 * 269.71927 * 4 3 2 6 6 C 1.38221 * 120.01159 * 179.77088 * 5 4 3 7 7 C 1.38327 * 119.98536 * 0.50986 * 6 5 4 8 8 Br 1.89105 * 120.00735 * 179.72464 * 7 6 5 9 9 C 1.38323 * 119.98237 * 359.74959 * 7 6 5 10 10 C 1.38215 * 119.98888 * 359.97438 * 9 7 6 11 11 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 12 12 O 1.21283 * 120.00089 * 179.97438 * 11 2 1 13 13 C 1.50702 * 120.00335 * 0.02562 * 11 2 1 14 14 C 1.53003 * 109.47196 * 179.97438 * 13 11 2 15 15 C 1.50702 * 109.47196 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99696 * 359.97438 * 15 14 13 17 17 C 1.37868 * 119.99997 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00240 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99973 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47020 * 89.99838 * 19 17 15 21 21 H 1.48498 * 109.47145 * 209.99783 * 19 17 15 22 22 H 1.48497 * 109.47314 * 329.99942 * 19 17 15 23 23 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 26 26 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 27 27 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 28 28 H 1.08002 * 119.99192 * 0.02763 * 5 4 3 29 29 H 1.07993 * 120.00526 * 180.23528 * 6 5 4 30 30 H 1.08003 * 120.00637 * 179.97438 * 9 7 6 31 31 H 1.08001 * 119.99713 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47188 * 299.99755 * 13 11 2 33 33 H 1.08996 * 109.47042 * 59.99980 * 13 11 2 34 34 H 1.09000 * 109.46913 * 299.99998 * 14 13 11 35 35 H 1.09001 * 109.47340 * 59.99709 * 14 13 11 36 36 H 0.97000 * 120.00429 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5298 2.5065 2.0704 6 6 1.7575 2.9018 3.3752 7 6 2.9101 2.5025 4.0274 8 35 3.2259 3.0493 5.8099 9 6 3.8319 1.7035 3.3752 10 6 3.6007 1.3041 2.0724 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0017 14 6 2.3795 -3.6353 -0.0027 15 6 1.6260 -4.9404 -0.0033 16 1 0.5460 -4.9403 -0.0025 17 6 2.3153 -6.1344 -0.0037 18 7 3.6305 -6.1344 -0.0041 19 14 1.3813 -7.7521 -0.0036 20 1 1.1333 -8.1805 -1.4037 21 1 2.1841 -8.7872 0.6959 22 1 0.0840 -7.5747 0.6969 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 3.1500 1.1383 -0.5139 27 1 1.6085 2.0284 -0.5138 28 1 0.6319 2.8216 1.5597 29 1 1.0377 3.5259 3.8838 30 1 4.7322 1.3919 3.8840 31 1 4.3205 0.6806 1.5630 32 1 0.7583 -2.5307 0.8880 33 1 0.7590 -2.5294 -0.8919 34 1 3.0062 -3.5767 -0.8927 35 1 3.0062 -3.5783 0.8873 36 1 4.1155 -6.9745 -0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290915744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:51 Heat of formation + Delta-G solvation = -37.639017 kcal Electronic energy + Delta-G solvation = -18990.116798 eV Core-core repulsion = 15905.268114 eV Total energy + Delta-G solvation = -3084.848684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14333 -39.98081 -36.67720 -35.59167 -33.86774 -32.85759 -32.06960 -31.03948 -28.22882 -27.80822 -26.18895 -23.81351 -23.53237 -22.14671 -19.98492 -18.78649 -17.89422 -17.51732 -17.01689 -16.65661 -16.41676 -16.25261 -16.02455 -14.91775 -14.61355 -14.50293 -14.26614 -14.03625 -13.85554 -13.69659 -13.33161 -13.18617 -12.90204 -12.78394 -12.46335 -12.32101 -12.11565 -11.91199 -11.84108 -11.57136 -11.30977 -11.29794 -10.69846 -10.56834 -10.03531 -9.73192 -9.57476 -8.18070 -6.32273 -0.02154 0.30016 0.58371 1.41870 1.44700 1.55579 1.71496 2.09334 2.42915 2.71121 3.14908 3.68293 3.79380 3.89137 3.92392 4.20128 4.34336 4.39277 4.46961 4.52690 4.58232 4.61523 4.76431 4.81412 4.95055 4.98212 5.12298 5.16748 5.19280 5.48065 5.52677 5.62668 5.64085 5.80704 5.85126 6.17597 6.40438 6.86325 7.29399 7.38266 8.94549 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.002762 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.316360 B =10135.106381 C =11025.157468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.150 3.850 4 C -0.094 4.094 5 C -0.090 4.090 6 C -0.094 4.094 7 C -0.098 4.098 8 Br -0.051 7.051 9 C -0.107 4.107 10 C -0.112 4.112 11 C 0.507 3.493 12 O -0.582 6.582 13 C -0.116 4.116 14 C 0.044 3.956 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.973 3.027 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.255 1.255 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.169 0.831 29 H 0.157 0.843 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.104 0.896 34 H -0.018 1.018 35 H -0.022 1.022 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 24.821 7.350 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C 0.028 3.972 4 C -0.096 4.096 5 C -0.109 4.109 6 C -0.114 4.114 7 C -0.178 4.178 8 Br 0.035 6.965 9 C -0.127 4.127 10 C -0.131 4.131 11 C 0.297 3.703 12 O -0.461 6.461 13 C -0.155 4.155 14 C 0.007 3.993 15 C -0.581 4.581 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.213 1.213 22 H -0.179 1.179 23 H 0.082 0.918 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.148 0.852 28 H 0.186 0.814 29 H 0.175 0.825 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.000 1.000 35 H -0.003 1.003 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.412 24.930 8.006 27.502 hybrid contribution 0.575 -1.337 -0.229 1.473 sum -7.836 23.593 7.777 26.048 Atomic orbital electron populations 1.22133 0.76638 1.05256 1.03073 1.48028 1.08588 1.04438 1.73437 1.20517 0.98799 0.85690 0.92180 1.20549 0.94306 0.97080 0.97653 1.21383 0.99369 0.96253 0.93858 1.21419 0.95473 0.99411 0.95077 1.21960 0.99370 1.03977 0.92492 1.96698 1.96437 1.89926 1.13487 1.21193 0.99393 0.97254 0.94816 1.21252 0.98398 0.98813 0.94671 1.21360 0.87768 0.86765 0.74369 1.90629 1.16439 1.88020 1.51044 1.21631 0.99257 0.90428 1.04230 1.18669 0.93653 0.92515 0.94477 1.21714 0.93974 0.91632 1.50757 0.90636 1.26138 0.95717 1.03951 0.94633 1.70179 1.08326 1.27777 1.51491 0.85329 0.78683 0.77714 0.78572 1.19593 1.21259 1.17871 0.91838 0.87471 0.90339 0.91343 0.85167 0.81354 0.82545 0.85263 0.87216 0.88558 0.87793 0.99955 1.00330 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.29 127.77 1.31 2.44 16 2 N -0.61 -15.82 2.86 -851.11 -2.43 -18.25 16 3 C 0.15 3.27 5.58 85.63 0.48 3.75 16 4 C -0.09 -2.13 5.46 -19.86 -0.11 -2.24 16 5 C -0.09 -1.45 9.70 22.26 0.22 -1.24 16 6 C -0.09 -1.64 9.79 22.29 0.22 -1.42 16 7 C -0.10 -2.16 6.22 22.31 0.14 -2.02 16 8 Br -0.05 -1.00 33.70 -20.37 -0.69 -1.69 16 9 C -0.11 -2.74 9.79 22.28 0.22 -2.53 16 10 C -0.11 -3.16 9.70 22.27 0.22 -2.94 16 11 C 0.51 19.48 7.67 87.66 0.67 20.16 16 12 O -0.58 -27.96 15.09 -3.04 -0.05 -28.00 16 13 C -0.12 -4.68 4.19 29.85 0.13 -4.55 16 14 C 0.04 2.50 4.26 29.85 0.13 2.63 16 15 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 16 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 17 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 18 N -0.94 -59.92 13.29 21.44 0.28 -59.64 16 19 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.25 -10.77 7.11 99.48 0.71 -10.07 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.11 0.89 7.89 -2.38 -0.02 0.87 16 25 H 0.08 1.30 6.44 -2.39 -0.02 1.28 16 26 H 0.07 1.86 7.36 -2.39 -0.02 1.84 16 27 H 0.13 1.61 7.84 -2.39 -0.02 1.59 16 28 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 30 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.11 3.70 7.58 -2.91 -0.02 3.68 16 32 H 0.10 3.52 8.11 -2.39 -0.02 3.50 16 33 H 0.10 3.65 7.40 -2.39 -0.02 3.63 16 34 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 35 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 36 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -77.93 330.20 4.53 -73.40 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.07 Total: 6.50 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 4.31 Total: -18.75 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -2.15 Total: -77.89 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -0.69 Total: -1.69 kcal Total: -77.93 4.53 -73.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290915744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.759 kcal (2) G-P(sol) polarization free energy of solvation -77.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds