Wall clock time and date at job start Tue Mar 31 2020 14:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00130 * 2 1 4 4 C 1.50700 * 109.46882 * 277.29776 * 3 2 1 5 5 C 1.38248 * 120.00339 * 96.63206 * 4 3 2 6 6 C 1.38218 * 120.00795 * 179.70373 * 5 4 3 7 7 C 1.38258 * 120.02380 * 0.27010 * 6 5 4 8 8 C 1.38198 * 120.01011 * 0.02562 * 7 6 5 9 9 C 1.38299 * 120.01089 * 276.88582 * 4 3 2 10 10 Br 1.89099 * 120.00786 * 0.04454 * 9 4 3 11 11 C 1.34775 * 119.99778 * 179.97438 * 2 1 3 12 12 O 1.21283 * 120.00122 * 186.68034 * 11 2 1 13 13 C 1.50696 * 120.00236 * 6.67800 * 11 2 1 14 14 C 1.53004 * 109.47421 * 179.97438 * 13 11 2 15 15 C 1.50696 * 109.47421 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99773 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00213 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99780 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00127 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47322 * 89.99737 * 19 17 15 21 21 H 1.48497 * 109.46992 * 210.00120 * 19 17 15 22 22 H 1.48503 * 109.46911 * 329.99726 * 19 17 15 23 23 H 1.08997 * 109.46853 * 90.00144 * 1 2 3 24 24 H 1.09002 * 109.47132 * 210.00185 * 1 2 3 25 25 H 1.09001 * 109.46993 * 330.00305 * 1 2 3 26 26 H 1.08997 * 109.47020 * 157.30086 * 3 2 1 27 27 H 1.08994 * 109.46938 * 37.29891 * 3 2 1 28 28 H 1.08004 * 119.99136 * 359.97438 * 5 4 3 29 29 H 1.08005 * 119.98803 * 180.25514 * 6 5 4 30 30 H 1.07998 * 119.99587 * 179.97438 * 7 6 5 31 31 H 1.07996 * 120.00842 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47586 * 300.00079 * 13 11 2 33 33 H 1.08996 * 109.47200 * 59.99846 * 13 11 2 34 34 H 1.09004 * 109.47150 * 299.99972 * 14 13 11 35 35 H 1.08996 * 109.47049 * 59.99766 * 14 13 11 36 36 H 0.97000 * 120.00292 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.2924 1.7939 -1.4093 5 6 1.3846 2.7346 -1.8591 6 6 1.4753 3.2209 -3.1497 7 6 2.4703 2.7628 -3.9933 8 6 3.3744 1.8179 -3.5466 9 6 3.2843 1.3311 -2.2547 10 35 4.5211 0.0381 -1.6429 11 6 2.1389 -1.1672 0.0005 12 8 3.3455 -1.1708 0.1227 13 6 1.3931 -2.4679 -0.1507 14 6 2.3857 -3.6318 -0.1183 15 6 1.6400 -4.9325 -0.2701 16 1 0.5655 -4.9293 -0.3792 17 6 2.3294 -6.1265 -0.2707 18 7 3.6379 -6.1303 -0.1383 19 14 1.4051 -7.7388 -0.4596 20 1 1.3010 -8.0839 -1.9002 21 1 2.1362 -8.8152 0.2558 22 1 0.0431 -7.5988 0.1155 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.2002 1.1093 0.3966 27 1 1.6713 1.9920 0.6227 28 1 0.6072 3.0928 -1.2004 29 1 0.7684 3.9589 -3.4994 30 1 2.5404 3.1428 -5.0018 31 1 4.1519 1.4604 -4.2054 32 1 0.6801 -2.5752 0.6668 33 1 0.8594 -2.4724 -1.1010 34 1 3.0983 -3.5245 -0.9361 35 1 2.9197 -3.6275 0.8319 36 1 4.1231 -6.9703 -0.1391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290945374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:54 Heat of formation + Delta-G solvation = 3.476129 kcal Electronic energy + Delta-G solvation = -19524.505600 eV Core-core repulsion = 16441.439802 eV Total energy + Delta-G solvation = -3083.065797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88611 -38.73165 -35.24763 -33.45413 -32.46480 -31.84889 -30.69341 -29.14500 -27.28494 -26.25578 -24.73602 -22.58778 -21.86970 -20.86700 -18.50414 -16.94198 -16.84209 -15.91782 -15.84502 -15.58407 -15.02583 -14.72126 -14.37847 -13.59931 -13.53238 -13.23438 -12.92998 -12.71336 -12.28246 -12.22868 -12.15798 -11.85104 -11.47922 -11.13236 -11.04037 -10.91579 -10.55593 -10.51539 -10.00601 -9.72347 -9.44161 -9.08122 -9.03412 -8.75061 -8.53470 -8.27345 -7.92897 -5.91812 -3.95435 1.01463 1.13556 1.95294 3.27053 3.35673 3.41610 3.43048 3.44564 3.73806 4.50738 4.62348 4.65172 4.81900 5.00027 5.21055 5.25912 5.33639 5.43265 5.48644 5.59350 5.65890 5.74160 5.82953 5.90081 6.11051 6.24429 6.29368 6.33776 6.35612 6.68899 6.82669 6.98934 7.79795 7.86009 7.94603 8.13248 8.45177 8.90263 9.13571 9.67674 11.19129 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.004227 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.304893 B = 6623.068956 C = 7196.281874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.145 3.855 4 C -0.076 4.076 5 C -0.105 4.105 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.098 4.098 9 C -0.090 4.090 10 Br 0.009 6.991 11 C 0.495 3.505 12 O -0.501 6.501 13 C -0.124 4.124 14 C 0.039 3.961 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 21.771 -4.681 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.360 5.360 3 C 0.021 3.979 4 C -0.080 4.080 5 C -0.124 4.124 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.118 4.118 9 C -0.171 4.171 10 Br 0.097 6.903 11 C 0.284 3.716 12 O -0.374 6.374 13 C -0.164 4.164 14 C 0.002 3.998 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.085 21.111 -4.344 21.773 hybrid contribution -0.930 -0.529 -0.500 1.181 sum -4.015 20.582 -4.844 21.523 Atomic orbital electron populations 1.21683 0.79979 1.02737 1.01370 1.47891 1.06406 1.05098 1.76651 1.20371 1.00311 0.85893 0.91279 1.20299 0.94216 0.96289 0.97187 1.21027 0.98271 0.96951 0.96182 1.21198 0.98298 0.99816 0.93945 1.21154 0.95239 0.97321 0.99886 1.21195 0.99550 0.96844 0.94222 1.22293 0.98947 0.99376 0.96435 1.97099 1.57101 1.49348 1.86801 1.21446 0.88372 0.85253 0.76493 1.90752 1.14280 1.86805 1.45515 1.21831 1.00598 0.92255 1.01721 1.18873 0.93198 0.89320 0.98414 1.21237 0.93470 0.91326 1.50263 0.92759 1.25006 0.94795 0.99093 0.95412 1.69996 1.06379 1.26442 1.50083 0.86628 0.79845 0.83606 0.78092 1.20724 1.21264 1.19906 0.93303 0.90558 0.91915 0.87813 0.90369 0.85525 0.85711 0.85540 0.85269 0.90670 0.90827 0.95883 0.95951 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.21 59.85 0.61 1.57 16 2 N -0.62 -9.26 2.86 -182.96 -0.52 -9.79 16 3 C 0.14 1.90 5.35 -5.20 -0.03 1.88 16 4 C -0.08 -0.98 5.44 -104.60 -0.57 -1.55 16 5 C -0.10 -1.06 9.68 -39.58 -0.38 -1.44 16 6 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 7 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 8 C -0.10 -1.20 9.79 -39.55 -0.39 -1.58 16 9 C -0.09 -1.29 6.22 -39.52 -0.25 -1.54 16 10 Br 0.01 0.16 27.29 -68.01 -1.86 -1.70 16 11 C 0.50 9.58 7.20 -10.99 -0.08 9.50 16 12 O -0.50 -11.06 11.01 5.56 0.06 -11.00 16 13 C -0.12 -2.59 4.36 -27.88 -0.12 -2.71 16 14 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 15 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.69 13.29 55.43 0.74 -26.96 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.86 6.49 -51.93 -0.34 0.52 16 25 H 0.06 0.52 7.97 -51.93 -0.41 0.11 16 26 H 0.10 1.58 6.16 -51.93 -0.32 1.26 16 27 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 28 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.08 1.44 7.21 -51.93 -0.37 1.07 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -33.73 318.96 -9.10 -42.83 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.77 Total: -3.39 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.53 Total: -11.70 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.21 Total: -36.75 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.06 Total: -11.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 35 Polarization: 0.16 SS G_CDS: -1.86 Total: -1.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.73 -9.10 -42.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290945374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.303 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds