Wall clock time and date at job start Tue Mar 31 2020 14:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46691 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47025 * 120.00050 * 13 11 9 16 16 H 1.48500 * 109.46740 * 240.00408 * 13 11 9 17 17 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 18 18 C 1.38268 * 119.99509 * 239.99832 * 17 2 1 19 19 C 1.38218 * 120.01953 * 179.97438 * 18 17 2 20 20 C 1.38242 * 120.01011 * 0.02940 * 19 18 17 21 21 C 1.38296 * 119.99113 * 359.97438 * 20 19 18 22 22 Br 1.89099 * 120.01191 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.99579 * 59.72149 * 17 2 1 24 24 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 25 25 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 28 28 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 29 29 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 30 30 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 31 31 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 32 32 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.98415 * 359.97438 * 18 17 2 34 34 H 1.08005 * 119.99322 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.00308 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.00260 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6841 -0.2197 -4.9000 9 6 2.1864 -0.9300 -6.1305 10 1 2.8079 -1.8077 -6.0314 11 6 1.8526 -0.4595 -7.3828 12 7 1.0962 0.6095 -7.5034 13 14 2.4747 -1.3404 -8.9080 14 1 3.3007 -2.5064 -8.5038 15 1 1.3194 -1.8076 -9.7156 16 1 3.2991 -0.4071 -9.7170 17 6 2.0323 -0.7104 1.2304 18 6 2.8273 -0.0384 2.1405 19 6 3.2879 -0.6894 3.2694 20 6 2.9544 -2.0129 3.4888 21 6 2.1594 -2.6855 2.5788 22 35 1.7023 -4.4957 2.8787 23 6 1.6937 -2.0319 1.4519 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.1487 0.5387 -2.5435 28 1 3.2846 -0.9412 -3.6510 29 1 1.8308 -1.9683 -3.6506 30 1 0.5941 -0.2197 -4.8996 31 1 2.0475 0.8080 -4.9003 32 1 0.8616 0.9409 -8.3843 33 1 3.0883 0.9954 1.9691 34 1 3.9085 -0.1639 3.9802 35 1 3.3140 -2.5213 4.3712 36 1 1.0694 -2.5555 0.7430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291060085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:25 Heat of formation + Delta-G solvation = -31.112262 kcal Electronic energy + Delta-G solvation = -18772.184614 eV Core-core repulsion = 15687.618952 eV Total energy + Delta-G solvation = -3084.565662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25688 -38.67835 -34.93698 -34.35999 -32.84719 -32.30170 -30.22714 -29.39717 -29.00132 -25.33995 -24.36771 -22.63351 -21.91059 -20.89653 -19.67794 -17.09380 -16.90746 -16.37099 -15.70290 -15.42694 -14.81966 -14.69396 -14.47071 -13.90621 -13.59289 -13.51086 -13.35363 -13.00840 -12.45555 -12.31676 -12.28147 -11.76093 -11.31858 -11.21618 -11.15017 -11.05278 -10.92344 -10.63962 -10.38927 -10.35642 -9.79306 -9.46955 -9.20621 -8.97603 -8.78096 -8.56783 -8.37823 -6.11570 -4.14315 0.95965 1.15479 1.51540 2.95162 3.27115 3.34028 3.36109 3.40758 3.77222 4.34768 4.40408 4.60885 4.85740 4.91307 4.99675 5.07881 5.17188 5.25717 5.27193 5.48984 5.54345 5.70323 5.76937 5.96756 6.06025 6.13427 6.31453 6.32279 6.36372 6.64584 6.71405 6.88503 7.49191 7.58879 7.86737 7.97508 8.25539 8.61217 8.91962 9.50812 11.00047 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002624 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.716577 B =10667.801307 C =11484.693932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.106 0.894 4 C 0.508 3.492 5 O -0.541 6.541 6 N -0.720 5.720 7 C 0.122 3.878 8 C 0.013 3.987 9 C -0.521 4.521 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.055 4.055 18 C -0.098 4.098 19 C -0.118 4.118 20 C -0.095 4.095 21 C -0.090 4.090 22 Br -0.057 7.057 23 C -0.054 4.054 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.397 0.603 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.261 0.739 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -1.958 25.293 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 H 0.124 0.876 4 C 0.292 3.708 5 O -0.418 6.418 6 N -0.370 5.370 7 C 0.000 4.000 8 C -0.025 4.025 9 C -0.560 4.560 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.057 4.057 18 C -0.116 4.116 19 C -0.137 4.137 20 C -0.115 4.115 21 C -0.169 4.169 22 Br 0.029 6.971 23 C -0.073 4.073 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.231 0.769 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.611 -3.258 25.318 25.534 hybrid contribution 0.189 0.408 -1.109 1.197 sum -0.422 -2.850 24.209 24.380 Atomic orbital electron populations 1.21814 0.91825 1.03246 1.03094 1.20357 0.97919 1.00348 0.91032 0.87590 1.20329 0.80870 0.84950 0.84613 1.90711 1.38021 1.26349 1.86734 1.46313 1.52731 1.31825 1.06109 1.21731 0.98531 0.96274 0.83510 1.19325 0.96931 0.96031 0.90194 1.21092 1.31853 1.12602 0.90445 0.92209 1.24995 0.94994 0.95021 0.99279 1.69960 1.36707 1.22974 1.23669 0.86462 0.78685 0.79742 0.82729 1.19565 1.20911 1.20926 1.19359 0.97635 0.93711 0.94973 1.21167 0.96380 1.00167 0.93908 1.21065 1.00431 0.94208 0.97967 1.21065 0.97071 0.94807 0.98550 1.21718 1.04392 0.91561 0.99272 1.96698 1.92623 1.11468 1.96338 1.20900 0.98000 0.93847 0.94590 0.91306 0.91116 0.91788 0.76897 0.92587 0.92562 0.95931 0.95966 0.92891 0.85381 0.85174 0.85263 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.90 37.16 0.33 -1.03 16 2 C -0.08 -0.86 2.90 -92.93 -0.27 -1.13 16 3 H 0.11 0.98 7.88 -51.93 -0.41 0.57 16 4 C 0.51 8.20 7.03 -10.99 -0.08 8.12 16 5 O -0.54 -10.87 15.13 5.55 0.08 -10.78 16 6 N -0.72 -12.02 5.45 -60.29 -0.33 -12.35 16 7 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 8 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 9 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 13 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.06 -0.67 4.39 -104.63 -0.46 -1.13 16 18 C -0.10 -0.99 9.67 -39.58 -0.38 -1.38 16 19 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 20 C -0.10 -0.98 9.79 -39.56 -0.39 -1.37 16 21 C -0.09 -1.09 6.22 -39.52 -0.25 -1.34 16 22 Br -0.06 -0.65 33.70 -68.01 -2.29 -2.94 16 23 C -0.05 -0.70 7.68 -39.55 -0.30 -1.01 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.63 7.56 -51.93 -0.39 0.23 16 26 H 0.06 0.66 7.37 -51.93 -0.38 0.28 16 27 H 0.40 5.65 7.89 -40.82 -0.32 5.32 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.13 0.99 7.95 -52.49 -0.42 0.58 16 34 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.82 7.51 -52.49 -0.39 1.42 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -31.69 329.36 -9.45 -41.14 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.82 Total: 1.06 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -2.77 Total: -12.20 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.41 Total: -37.52 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.29 Total: -2.94 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.69 -9.45 -41.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291060085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.028 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds