Wall clock time and date at job start Tue Mar 31 2020 14:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46691 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47025 * 120.00050 * 13 11 9 16 16 H 1.48500 * 109.46740 * 240.00408 * 13 11 9 17 17 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 18 18 C 1.38268 * 119.99509 * 239.99832 * 17 2 1 19 19 C 1.38218 * 120.01953 * 179.97438 * 18 17 2 20 20 C 1.38242 * 120.01011 * 0.02940 * 19 18 17 21 21 C 1.38296 * 119.99113 * 359.97438 * 20 19 18 22 22 Br 1.89099 * 120.01191 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.99579 * 59.72149 * 17 2 1 24 24 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 25 25 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 28 28 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 29 29 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 30 30 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 31 31 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 32 32 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.98415 * 359.97438 * 18 17 2 34 34 H 1.08005 * 119.99322 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.00308 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.00260 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6841 -0.2197 -4.9000 9 6 2.1864 -0.9300 -6.1305 10 1 2.8079 -1.8077 -6.0314 11 6 1.8526 -0.4595 -7.3828 12 7 1.0962 0.6095 -7.5034 13 14 2.4747 -1.3404 -8.9080 14 1 3.3007 -2.5064 -8.5038 15 1 1.3194 -1.8076 -9.7156 16 1 3.2991 -0.4071 -9.7170 17 6 2.0323 -0.7104 1.2304 18 6 2.8273 -0.0384 2.1405 19 6 3.2879 -0.6894 3.2694 20 6 2.9544 -2.0129 3.4888 21 6 2.1594 -2.6855 2.5788 22 35 1.7023 -4.4957 2.8787 23 6 1.6937 -2.0319 1.4519 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.1487 0.5387 -2.5435 28 1 3.2846 -0.9412 -3.6510 29 1 1.8308 -1.9683 -3.6506 30 1 0.5941 -0.2197 -4.8996 31 1 2.0475 0.8080 -4.9003 32 1 0.8616 0.9409 -8.3843 33 1 3.0883 0.9954 1.9691 34 1 3.9085 -0.1639 3.9802 35 1 3.3140 -2.5213 4.3712 36 1 1.0694 -2.5555 0.7430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291060085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:24 Heat of formation + Delta-G solvation = -49.737721 kcal Electronic energy + Delta-G solvation = -18772.992274 eV Core-core repulsion = 15687.618952 eV Total energy + Delta-G solvation = -3085.373323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34130 -39.76381 -36.60507 -35.36984 -34.75886 -33.13853 -31.69361 -30.49757 -29.97972 -26.96926 -25.57135 -23.59633 -23.14817 -22.44353 -20.88823 -18.58407 -18.08346 -17.81900 -16.82812 -16.65631 -16.44291 -16.11890 -15.67804 -15.01361 -14.82039 -14.57074 -14.35389 -14.28302 -14.08476 -13.37976 -13.22360 -13.16718 -12.95808 -12.60082 -12.53418 -12.25493 -12.12646 -11.96507 -11.76255 -11.65604 -11.43709 -11.26785 -10.71947 -10.61407 -10.00277 -9.82166 -9.63097 -8.25095 -6.35219 0.13875 0.32381 0.65144 1.39969 1.41321 1.54125 1.66824 2.23512 2.43320 2.74659 3.09725 3.46773 3.77551 3.93909 4.08065 4.15814 4.29211 4.33334 4.47710 4.48834 4.51712 4.69760 4.81702 4.85350 4.91575 4.98399 5.21288 5.24590 5.30696 5.36988 5.49770 5.53086 5.58339 5.78616 5.87378 6.16135 6.64705 6.78144 7.30215 7.34199 8.86797 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002624 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.716577 B =10667.801307 C =11484.693932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 H 0.138 0.862 4 C 0.506 3.494 5 O -0.583 6.583 6 N -0.715 5.715 7 C 0.141 3.859 8 C 0.024 3.976 9 C -0.547 4.547 10 H 0.056 0.944 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.963 3.037 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.073 4.073 18 C -0.097 4.097 19 C -0.113 4.113 20 C -0.098 4.098 21 C -0.108 4.108 22 Br -0.061 7.061 23 C -0.075 4.075 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.411 0.589 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.266 0.734 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -0.809 26.452 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 H 0.156 0.844 4 C 0.294 3.706 5 O -0.463 6.463 6 N -0.366 5.366 7 C 0.018 3.982 8 C -0.014 4.014 9 C -0.586 4.586 10 H 0.074 0.926 11 C -0.190 4.190 12 N -0.565 5.565 13 Si 0.788 3.212 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.074 4.074 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.187 4.187 22 Br 0.024 6.976 23 C -0.095 4.095 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.247 0.753 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.175 0.825 34 H 0.182 0.818 35 H 0.166 0.834 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.056 -2.087 26.496 26.578 hybrid contribution 0.019 0.055 -1.407 1.408 sum -0.037 -2.032 25.089 25.171 Atomic orbital electron populations 1.21834 0.90375 1.02826 1.04668 1.20370 0.98983 1.00988 0.88047 0.84416 1.21201 0.79676 0.84367 0.85382 1.90692 1.39910 1.28333 1.87347 1.46118 1.53024 1.32136 1.05315 1.21186 0.97534 0.95457 0.84069 1.19125 0.95879 0.95361 0.91000 1.21497 1.32144 1.12905 0.92031 0.92581 1.25838 0.95072 0.95730 1.02392 1.70051 1.37568 1.24156 1.24679 0.85425 0.78312 0.78682 0.78813 1.19154 1.20181 1.20129 1.19514 0.98666 0.93524 0.95718 1.21543 0.95092 1.01472 0.93430 1.21498 0.99755 0.93730 0.98118 1.21391 0.96279 0.95486 0.98631 1.21884 1.05383 0.91663 0.99779 1.96673 1.92767 1.11877 1.96270 1.20859 0.98957 0.94768 0.94963 0.88848 0.90370 0.93276 0.75256 0.93815 0.93967 0.97200 0.97144 0.92508 0.82494 0.81769 0.83428 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.90 71.98 0.64 -1.80 16 2 C -0.06 -1.33 2.90 -12.29 -0.04 -1.37 16 3 H 0.14 2.06 7.88 -2.39 -0.02 2.04 16 4 C 0.51 16.21 7.03 87.66 0.62 16.82 16 5 O -0.58 -23.85 15.13 -3.04 -0.05 -23.90 16 6 N -0.71 -23.79 5.45 -463.04 -2.52 -26.31 16 7 C 0.14 6.06 5.61 86.38 0.48 6.54 16 8 C 0.02 1.19 5.09 29.85 0.15 1.34 16 9 C -0.55 -30.60 9.11 25.60 0.23 -30.36 16 10 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 11 C 0.01 0.48 5.46 84.65 0.46 0.94 16 12 N -0.92 -53.77 13.29 21.45 0.28 -53.49 16 13 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 C -0.07 -1.65 4.39 -19.87 -0.09 -1.74 16 18 C -0.10 -1.67 9.67 22.27 0.22 -1.45 16 19 C -0.11 -1.73 10.05 22.27 0.22 -1.50 16 20 C -0.10 -1.83 9.79 22.28 0.22 -1.61 16 21 C -0.11 -2.57 6.22 22.31 0.14 -2.44 16 22 Br -0.06 -1.40 33.70 -20.37 -0.69 -2.09 16 23 C -0.08 -1.99 7.68 22.29 0.17 -1.82 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.24 7.56 -2.39 -0.02 1.22 16 26 H 0.05 1.00 7.37 -2.39 -0.02 0.99 16 27 H 0.41 11.37 7.89 -92.71 -0.73 10.64 16 28 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.16 1.73 7.95 -2.91 -0.02 1.70 16 34 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.11 3.23 7.51 -2.91 -0.02 3.21 16 Total: -1.00 -69.36 329.36 2.84 -66.52 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.35 Total: 12.09 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.43 Total: -18.45 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -2.24 Total: -79.80 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 35 Polarization: -1.40 SS G_CDS: -0.69 Total: -2.09 kcal Total: -69.36 2.84 -66.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291060085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.778 kcal (2) G-P(sol) polarization free energy of solvation -69.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds