Wall clock time and date at job start Tue Mar 31 2020 14:43:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46497 * 109.47516 * 2 1
4 4 C 1.34779 * 119.99967 * 90.00201 * 3 2 1
5 5 O 1.21289 * 120.00321 * 185.22321 * 4 3 2
6 6 C 1.50701 * 119.99964 * 5.21754 * 4 3 2
7 7 C 1.53002 * 109.47151 * 180.02562 * 6 4 3
8 8 C 1.50699 * 109.46890 * 180.02562 * 7 6 4
9 9 H 1.07998 * 120.00583 * 359.97438 * 8 7 6
10 10 C 1.37877 * 119.99845 * 180.02562 * 8 7 6
11 11 N 1.31510 * 120.00257 * 359.97438 * 10 8 7
12 12 Si 1.86802 * 119.99963 * 179.97438 * 10 8 7
13 13 H 1.48499 * 109.46991 * 60.00006 * 12 10 8
14 14 H 1.48503 * 109.47100 * 179.97438 * 12 10 8
15 15 H 1.48499 * 109.47410 * 299.99869 * 12 10 8
16 16 C 1.39925 * 120.00204 * 270.00082 * 3 2 1
17 17 C 1.38896 * 120.06225 * 112.35033 * 16 3 2
18 18 C 1.38102 * 119.94414 * 179.72312 * 17 16 3
19 19 C 1.38279 * 120.08112 * 0.54903 * 18 17 16
20 20 C 1.38350 * 120.13224 * 359.72131 * 19 18 17
21 21 Br 1.89107 * 119.97743 * 180.02562 * 20 19 18
22 22 C 1.38224 * 120.04906 * 0.02562 * 20 19 18
23 23 H 1.09007 * 109.46989 * 59.99266 * 1 2 3
24 24 H 1.08993 * 109.47352 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.47059 * 300.00227 * 1 2 3
26 26 H 1.08997 * 109.47430 * 120.00442 * 2 1 3
27 27 H 1.09000 * 109.47059 * 239.99773 * 2 1 3
28 28 H 1.09005 * 109.47447 * 300.00581 * 6 4 3
29 29 H 1.08998 * 109.47285 * 60.00082 * 6 4 3
30 30 H 1.09000 * 109.46749 * 299.99594 * 7 6 4
31 31 H 1.08998 * 109.46938 * 60.00147 * 7 6 4
32 32 H 0.97005 * 120.00495 * 180.02562 * 11 10 8
33 33 H 1.08000 * 120.03035 * 359.97438 * 17 16 3
34 34 H 1.08004 * 119.95450 * 180.24909 * 18 17 16
35 35 H 1.07998 * 119.93556 * 179.74529 * 19 18 17
36 36 H 1.08006 * 120.04046 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2431 2.0165 1.1672
5 8 2.5561 3.1883 1.1695
6 6 2.1054 1.2709 2.4696
7 6 2.4120 2.2159 3.6332
8 6 2.2748 1.4701 4.9355
9 1 1.9964 0.4267 4.9336
10 6 2.5038 2.1203 6.1296
11 7 2.8423 3.3910 6.1321
12 14 2.3331 1.1960 7.7440
13 1 3.2872 0.0583 7.7662
14 1 2.6308 2.1132 8.8733
15 1 0.9463 0.6817 7.8757
16 6 2.2516 2.0408 -1.2118
17 6 1.4514 3.1127 -1.5857
18 6 1.6874 3.7656 -2.7796
19 6 2.7120 3.3463 -3.6081
20 6 3.5076 2.2755 -3.2415
21 35 4.9080 1.7062 -4.3776
22 6 3.2795 1.6213 -2.0454
23 1 -0.3633 0.5140 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5139 0.8900
26 1 1.8933 -0.5139 0.8899
27 1 1.8933 -0.5139 -0.8900
28 1 1.0872 0.8940 2.5667
29 1 2.8051 0.4353 2.4857
30 1 3.4300 2.5930 3.5363
31 1 1.7119 3.0512 3.6169
32 1 3.0037 3.8484 6.9722
33 1 0.6479 3.4379 -0.9416
34 1 1.0678 4.6017 -3.0686
35 1 2.8919 3.8560 -4.5431
36 1 3.9009 0.7856 -1.7591
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000291162025.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:43:42
Heat of formation + Delta-G solvation = -14.966058 kcal
Electronic energy + Delta-G solvation = -19203.757360 eV
Core-core repulsion = 16119.891850 eV
Total energy + Delta-G solvation = -3083.865510 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.47873 -38.49457 -35.81585 -33.58342 -32.49157 -31.65737 -30.77530 -29.71067
-28.89993 -25.88932 -23.65213 -23.10188 -22.32532 -21.07928 -18.82216 -17.40462
-16.94169 -16.21931 -15.90077 -15.74637 -14.64696 -14.52931 -14.38736 -13.78575
-13.65555 -13.47755 -13.30556 -12.92629 -12.32821 -12.25475 -12.11372 -11.70928
-11.47146 -11.24991 -11.13609 -10.99045 -10.92392 -10.63757 -10.50638 -9.99239
-9.69542 -9.45878 -9.22840 -9.09820 -8.92235 -8.41579 -8.33716 -5.98394
-4.03327 0.95461 1.07784 1.41271 3.02965 3.06113 3.32842 3.37885
3.39308 3.44744 4.44829 4.66162 4.79462 4.89434 5.03583 5.11883
5.18321 5.21968 5.30829 5.36520 5.41388 5.55994 5.72110 5.76821
5.94286 6.07489 6.11877 6.16054 6.18514 6.27998 6.40921 6.78002
6.99830 7.51554 7.70545 7.80993 8.03241 8.33840 8.59903 9.04446
9.60418 11.12459
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.022695 B = 0.002801 C = 0.002743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.429138 B = 9993.554367 C =10204.268153
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.107 3.893
3 N -0.588 5.588
4 C 0.514 3.486
5 O -0.516 6.516
6 C -0.126 4.126
7 C 0.037 3.963
8 C -0.529 4.529
9 H 0.056 0.944
10 C 0.059 3.941
11 N -0.889 5.889
12 Si 0.893 3.107
13 H -0.277 1.277
14 H -0.287 1.287
15 H -0.277 1.277
16 C 0.162 3.838
17 C -0.091 4.091
18 C -0.104 4.104
19 C -0.099 4.099
20 C -0.081 4.081
21 Br -0.054 7.054
22 C -0.098 4.098
23 H 0.055 0.945
24 H 0.068 0.932
25 H 0.064 0.936
26 H 0.091 0.909
27 H 0.075 0.925
28 H 0.082 0.918
29 H 0.082 0.918
30 H 0.023 0.977
31 H 0.024 0.976
32 H 0.262 0.738
33 H 0.130 0.870
34 H 0.134 0.866
35 H 0.132 0.868
36 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.412 -6.082 -24.117 24.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C -0.015 4.015
3 N -0.321 5.321
4 C 0.306 3.694
5 O -0.389 6.389
6 C -0.165 4.165
7 C -0.001 4.001
8 C -0.567 4.567
9 H 0.074 0.926
10 C -0.143 4.143
11 N -0.528 5.528
12 Si 0.721 3.279
13 H -0.202 1.202
14 H -0.213 1.213
15 H -0.202 1.202
16 C 0.070 3.930
17 C -0.111 4.111
18 C -0.123 4.123
19 C -0.119 4.119
20 C -0.161 4.161
21 Br 0.031 6.969
22 C -0.120 4.120
23 H 0.074 0.926
24 H 0.087 0.913
25 H 0.083 0.917
26 H 0.110 0.890
27 H 0.094 0.906
28 H 0.101 0.899
29 H 0.100 0.900
30 H 0.042 0.958
31 H 0.042 0.958
32 H 0.072 0.928
33 H 0.148 0.852
34 H 0.152 0.848
35 H 0.150 0.850
36 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -0.661 -5.508 -24.347 24.971
hybrid contribution -0.385 -0.375 1.153 1.272
sum -1.045 -5.884 -23.194 23.951
Atomic orbital electron populations
1.22212 0.95593 1.02425 1.02811 1.21653 0.94745 0.81409 1.03673
1.45970 1.67658 1.14795 1.03643 1.21833 0.74879 0.87707 0.85027
1.90703 1.44999 1.16337 1.86850 1.21932 1.02664 1.00668 0.91279
1.18919 0.98166 0.93643 0.89333 1.21151 1.47724 0.96769 0.91041
0.92610 1.25019 0.95204 0.94855 0.99222 1.69983 1.46620 1.09398
1.26750 0.86649 0.78542 0.79599 0.83124 1.20220 1.21273 1.20225
1.17537 0.93974 0.94452 0.86993 1.21488 0.98532 0.95175 0.95891
1.21052 0.97652 0.99703 0.93895 1.21084 0.95039 0.95448 1.00321
1.21542 0.97715 1.00498 0.96356 1.96703 1.46289 1.90022 1.63887
1.21172 0.96718 1.00892 0.93196 0.92561 0.91278 0.91664 0.89032
0.90617 0.89932 0.89953 0.95810 0.95810 0.92847 0.85185 0.84776
0.84980 0.84828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16
2 C 0.11 1.17 5.90 -4.05 -0.02 1.15 16
3 N -0.59 -8.69 2.52 -113.47 -0.29 -8.97 16
4 C 0.51 9.91 7.55 -10.98 -0.08 9.82 16
5 O -0.52 -12.14 15.56 5.55 0.09 -12.06 16
6 C -0.13 -2.50 4.09 -27.88 -0.11 -2.61 16
7 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16
8 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16
9 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16
10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
11 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16
12 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16
13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
16 C 0.16 2.30 4.84 -83.70 -0.41 1.90 16
17 C -0.09 -1.21 9.34 -39.39 -0.37 -1.58 16
18 C -0.10 -1.13 10.04 -39.62 -0.40 -1.53 16
19 C -0.10 -1.05 9.78 -39.53 -0.39 -1.44 16
20 C -0.08 -0.95 6.22 -39.55 -0.25 -1.20 16
21 Br -0.05 -0.56 33.70 -68.01 -2.29 -2.85 16
22 C -0.10 -1.26 9.40 -39.37 -0.37 -1.63 16
23 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16
24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
25 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16
26 H 0.09 0.96 6.45 -51.93 -0.33 0.63 16
27 H 0.08 0.68 7.84 -51.93 -0.41 0.28 16
28 H 0.08 1.48 7.48 -51.93 -0.39 1.09 16
29 H 0.08 1.49 7.59 -51.93 -0.39 1.10 16
30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16
31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16
32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
33 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16
34 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16
35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16
36 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16
LS Contribution 329.85 15.07 4.97 4.97
Total: -1.00 -33.08 329.85 -9.19 -42.27
By element:
Atomic # 1 Polarization: 2.60 SS G_CDS: -4.84 Total: -2.24 kcal
Atomic # 6 Polarization: -8.51 SS G_CDS: -2.54 Total: -11.05 kcal
Atomic # 7 Polarization: -35.91 SS G_CDS: 0.45 Total: -35.46 kcal
Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.06 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -33.08 -9.19 -42.27 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291162025.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.300 kcal
(2) G-P(sol) polarization free energy of solvation -33.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.780 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.966 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds