Wall clock time and date at job start Tue Mar 31 2020 14:43:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46497 * 109.47516 * 2 1
4 4 C 1.34779 * 119.99967 * 90.00201 * 3 2 1
5 5 O 1.21289 * 120.00321 * 185.22321 * 4 3 2
6 6 C 1.50701 * 119.99964 * 5.21754 * 4 3 2
7 7 C 1.53002 * 109.47151 * 180.02562 * 6 4 3
8 8 C 1.50699 * 109.46890 * 180.02562 * 7 6 4
9 9 H 1.07998 * 120.00583 * 359.97438 * 8 7 6
10 10 C 1.37877 * 119.99845 * 180.02562 * 8 7 6
11 11 N 1.31510 * 120.00257 * 359.97438 * 10 8 7
12 12 Si 1.86802 * 119.99963 * 179.97438 * 10 8 7
13 13 H 1.48499 * 109.46991 * 60.00006 * 12 10 8
14 14 H 1.48503 * 109.47100 * 179.97438 * 12 10 8
15 15 H 1.48499 * 109.47410 * 299.99869 * 12 10 8
16 16 C 1.39925 * 120.00204 * 270.00082 * 3 2 1
17 17 C 1.38896 * 120.06225 * 112.35033 * 16 3 2
18 18 C 1.38102 * 119.94414 * 179.72312 * 17 16 3
19 19 C 1.38279 * 120.08112 * 0.54903 * 18 17 16
20 20 C 1.38350 * 120.13224 * 359.72131 * 19 18 17
21 21 Br 1.89107 * 119.97743 * 180.02562 * 20 19 18
22 22 C 1.38224 * 120.04906 * 0.02562 * 20 19 18
23 23 H 1.09007 * 109.46989 * 59.99266 * 1 2 3
24 24 H 1.08993 * 109.47352 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.47059 * 300.00227 * 1 2 3
26 26 H 1.08997 * 109.47430 * 120.00442 * 2 1 3
27 27 H 1.09000 * 109.47059 * 239.99773 * 2 1 3
28 28 H 1.09005 * 109.47447 * 300.00581 * 6 4 3
29 29 H 1.08998 * 109.47285 * 60.00082 * 6 4 3
30 30 H 1.09000 * 109.46749 * 299.99594 * 7 6 4
31 31 H 1.08998 * 109.46938 * 60.00147 * 7 6 4
32 32 H 0.97005 * 120.00495 * 180.02562 * 11 10 8
33 33 H 1.08000 * 120.03035 * 359.97438 * 17 16 3
34 34 H 1.08004 * 119.95450 * 180.24909 * 18 17 16
35 35 H 1.07998 * 119.93556 * 179.74529 * 19 18 17
36 36 H 1.08006 * 120.04046 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2431 2.0165 1.1672
5 8 2.5561 3.1883 1.1695
6 6 2.1054 1.2709 2.4696
7 6 2.4120 2.2159 3.6332
8 6 2.2748 1.4701 4.9355
9 1 1.9964 0.4267 4.9336
10 6 2.5038 2.1203 6.1296
11 7 2.8423 3.3910 6.1321
12 14 2.3331 1.1960 7.7440
13 1 3.2872 0.0583 7.7662
14 1 2.6308 2.1132 8.8733
15 1 0.9463 0.6817 7.8757
16 6 2.2516 2.0408 -1.2118
17 6 1.4514 3.1127 -1.5857
18 6 1.6874 3.7656 -2.7796
19 6 2.7120 3.3463 -3.6081
20 6 3.5076 2.2755 -3.2415
21 35 4.9080 1.7062 -4.3776
22 6 3.2795 1.6213 -2.0454
23 1 -0.3633 0.5140 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5139 0.8900
26 1 1.8933 -0.5139 0.8899
27 1 1.8933 -0.5139 -0.8900
28 1 1.0872 0.8940 2.5667
29 1 2.8051 0.4353 2.4857
30 1 3.4300 2.5930 3.5363
31 1 1.7119 3.0512 3.6169
32 1 3.0037 3.8484 6.9722
33 1 0.6479 3.4379 -0.9416
34 1 1.0678 4.6017 -3.0686
35 1 2.8919 3.8560 -4.5431
36 1 3.9009 0.7856 -1.7591
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000291162025.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:43:42
Heat of formation + Delta-G solvation = -33.583134 kcal
Electronic energy + Delta-G solvation = -19204.564657 eV
Core-core repulsion = 16119.891850 eV
Total energy + Delta-G solvation = -3084.672807 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.69883 -39.68336 -37.06015 -35.62497 -33.53218 -33.05107 -32.15765 -30.70713
-29.95056 -27.77808 -24.72481 -24.52378 -23.25997 -22.65769 -20.16060 -18.90735
-18.35242 -17.53247 -17.22591 -16.99315 -16.46250 -15.98636 -15.50170 -14.95645
-14.72066 -14.57083 -14.31287 -14.26494 -14.15667 -13.63409 -13.34408 -12.99097
-12.79856 -12.57752 -12.51518 -12.40127 -12.15361 -11.90011 -11.86125 -11.59378
-11.35475 -11.33150 -10.84638 -10.56219 -10.41839 -9.86108 -9.49158 -8.17776
-6.32128 -0.00583 0.13222 0.51653 1.42763 1.47168 1.54815 1.55763
1.87314 2.43275 2.49547 3.15355 3.74464 3.82229 3.94591 4.00932
4.09458 4.24705 4.28712 4.40716 4.43807 4.46111 4.59856 4.64364
4.86683 4.92170 5.04612 5.06113 5.21909 5.27599 5.35811 5.46067
5.49811 5.60337 5.83197 5.90201 6.16121 6.21267 6.85640 7.15617
7.38298 8.94690
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.022695 B = 0.002801 C = 0.002743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.429138 B = 9993.554367 C =10204.268153
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.097 3.903
3 N -0.574 5.574
4 C 0.515 3.485
5 O -0.573 6.573
6 C -0.113 4.113
7 C 0.044 3.956
8 C -0.543 4.543
9 H 0.078 0.922
10 C -0.006 4.006
11 N -0.938 5.938
12 Si 0.973 3.027
13 H -0.262 1.262
14 H -0.289 1.289
15 H -0.261 1.261
16 C 0.136 3.864
17 C -0.109 4.109
18 C -0.099 4.099
19 C -0.093 4.093
20 C -0.089 4.089
21 Br -0.039 7.039
22 C -0.103 4.103
23 H 0.054 0.946
24 H 0.096 0.904
25 H 0.046 0.954
26 H 0.099 0.901
27 H 0.101 0.899
28 H 0.107 0.893
29 H 0.106 0.894
30 H -0.019 1.019
31 H -0.018 1.018
32 H 0.263 0.737
33 H 0.117 0.883
34 H 0.162 0.838
35 H 0.160 0.840
36 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.877 -8.351 -25.300 26.708
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C -0.023 4.023
3 N -0.304 5.304
4 C 0.306 3.694
5 O -0.450 6.450
6 C -0.152 4.152
7 C 0.006 3.994
8 C -0.581 4.581
9 H 0.096 0.904
10 C -0.204 4.204
11 N -0.578 5.578
12 Si 0.797 3.203
13 H -0.187 1.187
14 H -0.215 1.215
15 H -0.186 1.186
16 C 0.044 3.956
17 C -0.129 4.129
18 C -0.118 4.118
19 C -0.112 4.112
20 C -0.169 4.169
21 Br 0.046 6.954
22 C -0.125 4.125
23 H 0.073 0.927
24 H 0.114 0.886
25 H 0.065 0.935
26 H 0.118 0.882
27 H 0.119 0.881
28 H 0.125 0.875
29 H 0.124 0.876
30 H -0.001 1.001
31 H 0.001 0.999
32 H 0.071 0.929
33 H 0.136 0.864
34 H 0.180 0.820
35 H 0.177 0.823
36 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -1.147 -7.845 -25.583 26.783
hybrid contribution -0.224 0.346 1.372 1.432
sum -1.371 -7.499 -24.211 25.383
Atomic orbital electron populations
1.22171 0.94592 1.03878 1.01863 1.22018 0.95578 0.79337 1.05341
1.45805 1.66027 1.15886 1.02688 1.21614 0.74595 0.86938 0.86210
1.90675 1.48047 1.18570 1.87750 1.21678 1.04590 0.99528 0.89411
1.18689 0.94509 0.93794 0.92412 1.21661 1.47063 0.97798 0.91553
0.90418 1.26132 0.94616 0.95698 1.03909 1.70172 1.48083 1.11651
1.27860 0.85381 0.79419 0.78172 0.77323 1.18656 1.21471 1.18576
1.17734 0.95384 0.95499 0.86970 1.21566 0.98765 0.95579 0.97004
1.21362 0.97824 0.99840 0.92750 1.21440 0.94029 0.94748 1.01006
1.21740 0.98221 1.00649 0.96254 1.96718 1.45592 1.89952 1.63115
1.21216 0.96383 1.01352 0.93527 0.92684 0.88559 0.93451 0.88248
0.88070 0.87540 0.87561 1.00095 0.99929 0.92870 0.86444 0.82022
0.82280 0.84226
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.99 10.24 71.98 0.74 -2.25 16
2 C 0.10 1.95 5.90 86.38 0.51 2.45 16
3 N -0.57 -16.81 2.52 -631.28 -1.59 -18.41 16
4 C 0.51 20.42 7.55 87.66 0.66 21.09 16
5 O -0.57 -28.57 15.56 -3.06 -0.05 -28.62 16
6 C -0.11 -4.51 4.09 29.85 0.12 -4.38 16
7 C 0.04 2.42 4.26 29.85 0.13 2.55 16
8 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16
9 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16
10 C -0.01 -0.35 5.46 84.66 0.46 0.11 16
11 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16
12 Si 0.97 43.92 29.54 68.60 2.03 45.95 16
13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16
14 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16
15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16
16 C 0.14 3.81 4.84 38.15 0.18 4.00 16
17 C -0.11 -2.92 9.34 22.40 0.21 -2.71 16
18 C -0.10 -2.01 10.04 22.25 0.22 -1.79 16
19 C -0.09 -1.76 9.78 22.31 0.22 -1.54 16
20 C -0.09 -1.92 6.22 22.29 0.14 -1.78 16
21 Br -0.04 -0.73 33.70 -20.37 -0.69 -1.42 16
22 C -0.10 -2.55 9.40 22.41 0.21 -2.33 16
23 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16
24 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
25 H 0.05 1.02 7.57 -2.39 -0.02 1.00 16
26 H 0.10 1.84 6.45 -2.39 -0.02 1.83 16
27 H 0.10 1.55 7.84 -2.39 -0.02 1.53 16
28 H 0.11 3.73 7.48 -2.38 -0.02 3.71 16
29 H 0.11 3.72 7.59 -2.39 -0.02 3.70 16
30 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16
31 H -0.02 -1.12 8.10 -2.39 -0.02 -1.13 16
32 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16
33 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16
34 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16
35 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16
36 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16
Total: -1.00 -75.62 329.85 5.09 -70.53
By element:
Atomic # 1 Polarization: 7.06 SS G_CDS: 1.07 Total: 8.13 kcal
Atomic # 6 Polarization: -21.01 SS G_CDS: 4.04 Total: -16.97 kcal
Atomic # 7 Polarization: -76.29 SS G_CDS: -1.31 Total: -77.60 kcal
Atomic # 8 Polarization: -28.57 SS G_CDS: -0.05 Total: -28.62 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal
Atomic # 35 Polarization: -0.73 SS G_CDS: -0.69 Total: -1.42 kcal
Total: -75.62 5.09 -70.53 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291162025.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.942 kcal
(2) G-P(sol) polarization free energy of solvation -75.616 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.583 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds