Wall clock time and date at job start Tue Mar 31 2020 13:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38104 * 120.03609 * 2 1 4 4 C 1.38363 * 120.06311 * 180.31870 * 3 2 1 5 5 Br 1.89092 * 119.94149 * 179.69908 * 4 3 2 6 6 C 1.38367 * 120.11530 * 359.67482 * 4 3 2 7 7 C 1.38101 * 120.06631 * 0.02562 * 6 4 3 8 8 C 1.50692 * 120.03570 * 180.02562 * 7 6 4 9 9 C 1.38869 * 119.93774 * 359.97438 * 7 6 4 10 10 N 1.39960 * 120.06227 * 180.02562 * 9 7 6 11 11 C 1.34777 * 119.99860 * 127.72261 * 10 9 7 12 12 O 1.21290 * 120.00346 * 356.61466 * 11 10 9 13 13 C 1.50706 * 119.99857 * 176.61819 * 11 10 9 14 14 C 1.52997 * 109.46874 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47145 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99608 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00147 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47124 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46892 * 120.00565 * 19 17 15 22 22 H 1.48498 * 109.47171 * 240.00456 * 19 17 15 23 23 H 1.09000 * 109.47015 * 278.15569 * 1 2 3 24 24 H 1.09000 * 109.46770 * 38.15071 * 1 2 3 25 25 H 1.08994 * 109.47721 * 158.15096 * 1 2 3 26 26 H 1.08005 * 119.96953 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.96314 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47675 * 269.98002 * 8 7 6 29 29 H 1.09008 * 109.47087 * 29.97693 * 8 7 6 30 30 H 1.09003 * 109.47493 * 149.97532 * 8 7 6 31 31 H 0.96999 * 119.99799 * 307.99663 * 10 9 7 32 32 H 1.08994 * 109.46792 * 299.99581 * 13 11 10 33 33 H 1.08999 * 109.47146 * 59.99920 * 13 11 10 34 34 H 1.08994 * 109.47681 * 300.00027 * 14 13 11 35 35 H 1.08999 * 109.47011 * 60.00191 * 14 13 11 36 36 H 0.96997 * 120.00107 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5819 1.1962 -0.0067 5 35 4.5249 2.8352 -0.0152 6 6 4.2767 -0.0003 -0.0065 7 6 3.5906 -1.1988 -0.0003 8 6 4.3480 -2.5016 0.0004 9 6 2.2019 -1.2024 0.0064 10 7 1.5039 -2.4155 0.0132 11 6 0.5533 -2.6407 0.9417 12 8 0.3451 -1.8182 1.8085 13 6 -0.2509 -3.9147 0.9031 14 6 -1.2529 -3.9204 2.0592 15 6 -2.0576 -5.1941 2.0202 16 1 -1.8724 -5.9264 1.2483 17 6 -3.0294 -5.4249 2.9706 18 7 -3.2546 -4.5334 3.9109 19 14 -4.0263 -7.0040 2.9227 20 1 -3.5819 -7.8352 1.7753 21 1 -3.8228 -7.7564 4.1867 22 1 -5.4663 -6.6758 2.7683 23 1 -0.3633 0.1458 1.0173 24 1 -0.3633 0.8082 -0.6348 25 1 -0.3634 -0.9538 -0.3824 26 1 1.6583 2.1310 0.0004 27 1 5.3567 0.0031 -0.0113 28 1 4.5262 -2.8189 -1.0271 29 1 5.3023 -2.3667 0.5097 30 1 3.7636 -3.2614 0.5192 31 1 1.7072 -3.0957 -0.6478 32 1 -0.7874 -3.9770 -0.0436 33 1 0.4183 -4.7698 0.9985 34 1 -0.7161 -3.8583 3.0057 35 1 -1.9221 -3.0653 1.9642 36 1 -3.9385 -4.6956 4.5793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291379372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:01 Heat of formation + Delta-G solvation = -27.052784 kcal Electronic energy + Delta-G solvation = -19201.708143 eV Core-core repulsion = 16117.318513 eV Total energy + Delta-G solvation = -3084.389630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69436 -38.52887 -34.82944 -33.75397 -33.46418 -32.08747 -30.96762 -29.41916 -27.30195 -26.90888 -25.55744 -22.51776 -21.16802 -20.93263 -19.75894 -17.55616 -17.05184 -16.29016 -15.73708 -15.20772 -14.67584 -14.48045 -14.17302 -14.08581 -13.34801 -13.18950 -13.15985 -12.82301 -12.55716 -12.30095 -12.24004 -11.91068 -11.42714 -11.35609 -11.23848 -10.99168 -10.69471 -10.62493 -10.42207 -10.04586 -9.76267 -9.71938 -9.29748 -9.11529 -8.74438 -8.38185 -8.19321 -6.01338 -4.06066 0.94739 1.17142 1.49907 3.00670 3.27607 3.29333 3.37163 3.39983 3.50287 4.43174 4.56434 4.63468 4.99036 5.10743 5.20986 5.28689 5.34018 5.42163 5.48007 5.57392 5.64810 5.84537 5.92435 6.03722 6.07001 6.09567 6.10649 6.29907 6.42070 6.50211 6.77429 6.91094 7.60824 7.68419 7.77563 8.00079 8.31207 8.57909 9.02115 9.58042 11.09512 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.034839 B = 0.002561 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.510861 B =10929.214051 C =11393.874721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.065 4.065 3 C -0.085 4.085 4 C -0.095 4.095 5 Br -0.060 7.060 6 C -0.087 4.087 7 C -0.095 4.095 8 C -0.113 4.113 9 C 0.166 3.834 10 N -0.690 5.690 11 C 0.508 3.492 12 O -0.509 6.509 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.888 5.888 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.090 0.910 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.730 11.889 -12.413 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.105 4.105 4 C -0.175 4.175 5 Br 0.026 6.974 6 C -0.108 4.108 7 C -0.099 4.099 8 C -0.170 4.170 9 C 0.071 3.929 10 N -0.339 5.339 11 C 0.298 3.702 12 O -0.382 6.382 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.109 0.891 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.744 13.083 -11.598 24.911 hybrid contribution -0.617 -1.470 -0.248 1.614 sum 17.127 11.613 -11.846 23.844 Atomic orbital electron populations 1.20897 0.89822 1.02305 1.03601 1.19908 0.96972 0.91262 0.98714 1.20806 0.91772 0.98205 0.99743 1.21616 0.94555 0.91356 1.09947 1.96670 1.75410 1.27497 1.97858 1.20729 0.99780 0.89897 1.00362 1.19830 0.92202 0.95732 1.02089 1.20740 0.99965 0.93834 1.02443 1.17492 0.89847 0.86311 0.99254 1.43934 1.39229 1.16350 1.34430 1.21792 0.78738 0.89943 0.79747 1.90707 1.65723 1.46971 1.34751 1.21908 0.98680 0.91999 1.04245 1.18911 0.92346 0.97321 0.91438 1.21229 1.18792 1.03929 1.12688 0.92526 1.25022 0.97211 0.96691 0.95423 1.70000 1.32823 1.34534 1.15342 0.86536 0.80034 0.83485 0.77917 1.19738 1.20997 1.20985 0.89129 0.92007 0.91663 0.84893 0.84986 0.90925 0.91113 0.90948 0.75571 0.89893 0.89961 0.95756 0.95726 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.22 36.01 0.30 -1.30 16 2 C -0.07 -0.93 5.48 -104.43 -0.57 -1.50 16 3 C -0.08 -1.08 9.46 -39.58 -0.37 -1.45 16 4 C -0.09 -1.13 6.23 -39.49 -0.25 -1.38 16 5 Br -0.06 -0.62 33.70 -68.01 -2.29 -2.91 16 6 C -0.09 -0.98 9.43 -39.58 -0.37 -1.35 16 7 C -0.10 -1.12 5.90 -104.44 -0.62 -1.74 16 8 C -0.11 -1.02 9.67 36.00 0.35 -0.67 16 9 C 0.17 2.28 5.84 -83.68 -0.49 1.79 16 10 N -0.69 -9.29 3.91 -9.85 -0.04 -9.32 16 11 C 0.51 9.04 5.99 -10.98 -0.07 8.97 16 12 O -0.51 -11.09 13.06 5.55 0.07 -11.02 16 13 C -0.13 -2.42 5.64 -27.88 -0.16 -2.58 16 14 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 15 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.09 1.54 7.09 -51.93 -0.37 1.17 16 24 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 25 H 0.06 1.00 6.18 -51.93 -0.32 0.68 16 26 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 30 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 31 H 0.41 4.11 8.67 -40.82 -0.35 3.75 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -32.24 323.89 -9.21 -41.44 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.77 Total: 0.46 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.78 Total: -13.65 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.70 Total: -35.44 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.24 -9.21 -41.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291379372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.392 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds