Wall clock time and date at job start Tue Mar 31 2020 13:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38104 * 120.03609 * 2 1 4 4 C 1.38363 * 120.06311 * 180.31870 * 3 2 1 5 5 Br 1.89092 * 119.94149 * 179.69908 * 4 3 2 6 6 C 1.38367 * 120.11530 * 359.67482 * 4 3 2 7 7 C 1.38101 * 120.06631 * 0.02562 * 6 4 3 8 8 C 1.50692 * 120.03570 * 180.02562 * 7 6 4 9 9 C 1.38869 * 119.93774 * 359.97438 * 7 6 4 10 10 N 1.39960 * 120.06227 * 180.02562 * 9 7 6 11 11 C 1.34777 * 119.99860 * 127.72261 * 10 9 7 12 12 O 1.21290 * 120.00346 * 356.61466 * 11 10 9 13 13 C 1.50706 * 119.99857 * 176.61819 * 11 10 9 14 14 C 1.52997 * 109.46874 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47145 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99608 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00147 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47124 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46892 * 120.00565 * 19 17 15 22 22 H 1.48498 * 109.47171 * 240.00456 * 19 17 15 23 23 H 1.09000 * 109.47015 * 278.15569 * 1 2 3 24 24 H 1.09000 * 109.46770 * 38.15071 * 1 2 3 25 25 H 1.08994 * 109.47721 * 158.15096 * 1 2 3 26 26 H 1.08005 * 119.96953 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.96314 * 180.02562 * 6 4 3 28 28 H 1.09002 * 109.47675 * 269.98002 * 8 7 6 29 29 H 1.09008 * 109.47087 * 29.97693 * 8 7 6 30 30 H 1.09003 * 109.47493 * 149.97532 * 8 7 6 31 31 H 0.96999 * 119.99799 * 307.99663 * 10 9 7 32 32 H 1.08994 * 109.46792 * 299.99581 * 13 11 10 33 33 H 1.08999 * 109.47146 * 59.99920 * 13 11 10 34 34 H 1.08994 * 109.47681 * 300.00027 * 14 13 11 35 35 H 1.08999 * 109.47011 * 60.00191 * 14 13 11 36 36 H 0.96997 * 120.00107 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5819 1.1962 -0.0067 5 35 4.5249 2.8352 -0.0152 6 6 4.2767 -0.0003 -0.0065 7 6 3.5906 -1.1988 -0.0003 8 6 4.3480 -2.5016 0.0004 9 6 2.2019 -1.2024 0.0064 10 7 1.5039 -2.4155 0.0132 11 6 0.5533 -2.6407 0.9417 12 8 0.3451 -1.8182 1.8085 13 6 -0.2509 -3.9147 0.9031 14 6 -1.2529 -3.9204 2.0592 15 6 -2.0576 -5.1941 2.0202 16 1 -1.8724 -5.9264 1.2483 17 6 -3.0294 -5.4249 2.9706 18 7 -3.2546 -4.5334 3.9109 19 14 -4.0263 -7.0040 2.9227 20 1 -3.5819 -7.8352 1.7753 21 1 -3.8228 -7.7564 4.1867 22 1 -5.4663 -6.6758 2.7683 23 1 -0.3633 0.1458 1.0173 24 1 -0.3633 0.8082 -0.6348 25 1 -0.3634 -0.9538 -0.3824 26 1 1.6583 2.1310 0.0004 27 1 5.3567 0.0031 -0.0113 28 1 4.5262 -2.8189 -1.0271 29 1 5.3023 -2.3667 0.5097 30 1 3.7636 -3.2614 0.5192 31 1 1.7072 -3.0957 -0.6478 32 1 -0.7874 -3.9770 -0.0436 33 1 0.4183 -4.7698 0.9985 34 1 -0.7161 -3.8583 3.0057 35 1 -1.9221 -3.0653 1.9642 36 1 -3.9385 -4.6956 4.5793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291379372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:00 Heat of formation + Delta-G solvation = -45.764861 kcal Electronic energy + Delta-G solvation = -19202.519559 eV Core-core repulsion = 16117.318513 eV Total energy + Delta-G solvation = -3085.201047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.85335 -39.76502 -36.04360 -35.55784 -34.62788 -33.34926 -32.61787 -30.39089 -28.57639 -27.83758 -27.24967 -24.15355 -22.30252 -22.13148 -21.10196 -18.91030 -18.56324 -17.69025 -17.24411 -16.49247 -16.15975 -16.05228 -15.29620 -15.06671 -14.75718 -14.38535 -14.20720 -14.08166 -14.00266 -13.62121 -13.23795 -13.21730 -12.95014 -12.82619 -12.48523 -12.39802 -12.33154 -11.92088 -11.66878 -11.63894 -11.28359 -11.27579 -10.90807 -10.71557 -10.56282 -9.69294 -9.23270 -8.17727 -6.31168 -0.05168 0.21695 0.58704 1.43105 1.43739 1.56949 1.63418 2.09141 2.43751 2.51091 3.15956 3.66119 3.68410 3.94228 4.10001 4.25161 4.27607 4.45797 4.47543 4.54113 4.57188 4.69460 4.74691 4.80639 5.03624 5.06373 5.11044 5.17454 5.24383 5.39658 5.44349 5.51583 5.64156 5.83578 5.87577 6.18051 6.45514 6.87667 7.26058 7.39219 8.94864 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.034839 B = 0.002561 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.510861 B =10929.214051 C =11393.874721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.099 4.099 5 Br -0.043 7.043 6 C -0.087 4.087 7 C -0.091 4.091 8 C -0.113 4.113 9 C 0.140 3.860 10 N -0.666 5.666 11 C 0.514 3.486 12 O -0.558 6.558 13 C -0.117 4.117 14 C 0.043 3.957 15 C -0.540 4.540 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.252 1.252 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.142 0.858 27 H 0.158 0.842 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.426 0.574 32 H 0.108 0.892 33 H 0.108 0.892 34 H -0.017 1.017 35 H -0.015 1.015 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.503 10.645 -14.398 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.088 4.088 3 C -0.114 4.114 4 C -0.179 4.179 5 Br 0.042 6.958 6 C -0.107 4.107 7 C -0.094 4.094 8 C -0.169 4.169 9 C 0.046 3.954 10 N -0.315 5.315 11 C 0.304 3.696 12 O -0.435 6.435 13 C -0.157 4.157 14 C 0.006 3.994 15 C -0.578 4.578 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.795 3.205 20 H -0.175 1.175 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.266 0.734 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.001 0.999 35 H 0.003 0.997 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 19.563 11.825 -13.647 26.623 hybrid contribution -1.072 -0.969 0.350 1.487 sum 18.491 10.855 -13.297 25.230 Atomic orbital electron populations 1.20763 0.90802 1.02475 1.01962 1.19992 0.96588 0.92313 0.99924 1.20929 0.92440 0.98094 0.99889 1.21825 0.94461 0.92531 1.09078 1.96687 1.74785 1.26526 1.97771 1.21064 1.01038 0.89322 0.99240 1.20133 0.91368 0.97332 1.00537 1.20831 0.99999 0.91958 1.04128 1.17709 0.90867 0.85848 1.00999 1.43473 1.37684 1.16909 1.33469 1.21479 0.79251 0.88987 0.79899 1.90705 1.67417 1.48283 1.37065 1.21656 0.98013 0.93719 1.02275 1.18678 0.92856 0.95480 0.92406 1.21740 1.18644 1.04585 1.12868 0.90552 1.26100 0.98735 1.00568 0.94983 1.70175 1.33857 1.37170 1.16490 0.85316 0.77935 0.78759 0.78501 1.17545 1.20794 1.20769 0.92365 0.89827 0.92825 0.84007 0.82475 0.88423 0.89641 0.91767 0.73378 0.87418 0.87365 0.99902 0.99678 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.15 8.22 71.24 0.59 -2.56 16 2 C -0.09 -2.43 5.48 -19.74 -0.11 -2.54 16 3 C -0.09 -2.32 9.46 22.27 0.21 -2.11 16 4 C -0.10 -2.20 6.23 22.33 0.14 -2.06 16 5 Br -0.04 -0.81 33.70 -20.37 -0.69 -1.50 16 6 C -0.09 -1.73 9.43 22.27 0.21 -1.52 16 7 C -0.09 -1.94 5.90 -19.75 -0.12 -2.06 16 8 C -0.11 -1.68 9.67 71.23 0.69 -0.99 16 9 C 0.14 3.73 5.84 38.15 0.22 3.95 16 10 N -0.67 -17.27 3.91 -303.47 -1.19 -18.45 16 11 C 0.51 18.52 5.99 87.66 0.53 19.05 16 12 O -0.56 -25.65 13.06 -3.06 -0.04 -25.69 16 13 C -0.12 -4.37 5.64 29.85 0.17 -4.20 16 14 C 0.04 2.33 4.26 29.85 0.13 2.45 16 15 C -0.54 -29.88 9.11 25.60 0.23 -29.64 16 16 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 17 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 18 N -0.94 -58.61 13.29 21.45 0.28 -58.32 16 19 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 20 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H 0.06 2.14 7.09 -2.39 -0.02 2.13 16 24 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 25 H 0.05 1.70 6.18 -2.39 -0.01 1.68 16 26 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.05 8.09 -2.38 -0.02 1.03 16 30 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 31 H 0.43 7.64 8.67 -92.71 -0.80 6.83 16 32 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 34 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 35 H -0.02 -0.92 8.10 -2.39 -0.02 -0.94 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -73.28 323.89 4.04 -69.24 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.29 Total: 11.23 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 3.35 Total: -22.12 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -0.90 Total: -76.78 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.04 Total: -25.69 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.69 Total: -1.50 kcal Total: -73.28 4.04 -69.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291379372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.479 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds