Wall clock time and date at job start Tue Mar 31 2020 14:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46811 * 2 1 4 4 C 1.50692 * 109.47290 * 120.00136 * 2 1 3 5 5 H 1.08001 * 120.00450 * 120.00479 * 4 2 1 6 6 C 1.37881 * 120.00355 * 299.99783 * 4 2 1 7 7 N 1.31516 * 119.99674 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00391 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46989 * 60.00312 * 8 6 4 10 10 H 1.48496 * 109.47338 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47104 * 300.00330 * 8 6 4 12 12 N 1.46496 * 109.47001 * 240.00518 * 2 1 3 13 13 C 1.34774 * 120.00339 * 84.99506 * 12 2 1 14 14 O 1.21282 * 119.99971 * 359.97438 * 13 12 2 15 15 C 1.50706 * 120.00164 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.46456 * 299.99542 * 15 13 12 17 17 C 1.52997 * 109.47238 * 59.99708 * 15 13 12 18 18 C 1.50697 * 109.47178 * 180.02562 * 15 13 12 19 19 C 1.38268 * 119.99264 * 299.72409 * 18 15 13 20 20 C 1.38221 * 120.01668 * 179.72957 * 19 18 15 21 21 C 1.38236 * 120.01411 * 0.54233 * 20 19 18 22 22 C 1.38308 * 119.98579 * 359.73303 * 21 20 19 23 23 Br 1.89096 * 120.00818 * 180.02562 * 22 21 20 24 24 C 1.38194 * 120.00021 * 119.99526 * 18 15 13 25 25 H 1.08994 * 109.47420 * 60.00001 * 1 2 3 26 26 H 1.09007 * 109.46811 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46925 * 299.99738 * 1 2 3 28 28 H 0.96995 * 120.00425 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99865 * 264.99923 * 12 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 17 15 13 31 31 H 1.09001 * 109.46832 * 60.00314 * 17 15 13 32 32 H 1.09004 * 109.47261 * 300.00295 * 17 15 13 33 33 H 1.08001 * 119.98616 * 359.97438 * 19 18 15 34 34 H 1.08008 * 119.98891 * 180.27212 * 20 19 18 35 35 H 1.07999 * 120.00900 * 179.70525 * 21 20 19 36 36 H 1.08010 * 120.00005 * 0.02739 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 3.8077 -1.1189 4.0076 10 1 1.8282 -0.4193 5.2204 11 1 1.8283 -2.5198 4.0081 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8580 1.1585 -2.4117 15 6 2.6487 -0.7286 -3.5879 16 1 3.6479 -1.1210 -3.3987 17 6 1.7043 -1.8822 -3.9315 18 6 2.7000 0.2399 -4.7412 19 6 1.5441 0.8655 -5.1704 20 6 1.5915 1.7582 -6.2246 21 6 2.7927 2.0174 -6.8577 22 6 3.9483 1.3875 -6.4324 23 35 5.5919 1.7421 -7.2974 24 6 3.9013 0.4984 -5.3735 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7083 1.1608 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 2.0675 -2.3964 -4.8214 31 1 0.7051 -1.4897 -4.1206 32 1 1.6676 -2.5827 -3.0971 33 1 0.6046 0.6596 -4.6791 34 1 0.6890 2.2500 -6.5566 35 1 2.8289 2.7113 -7.6844 36 1 4.8034 0.0060 -5.0413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292249853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:32 Heat of formation + Delta-G solvation = -24.595847 kcal Electronic energy + Delta-G solvation = -19294.300122 eV Core-core repulsion = 16210.017033 eV Total energy + Delta-G solvation = -3084.283089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01003 -38.41940 -34.91243 -34.09648 -32.42662 -32.05358 -30.14561 -29.10472 -28.38138 -25.27648 -24.65456 -22.52639 -22.21476 -20.43869 -19.21270 -17.25014 -16.80759 -15.96398 -15.46741 -15.19514 -14.88539 -14.25800 -14.22244 -13.58795 -13.40584 -13.36656 -12.93754 -12.43703 -12.32599 -12.18786 -11.70389 -11.61464 -11.19567 -11.03911 -11.02787 -10.93975 -10.81505 -10.69488 -10.37008 -10.33830 -10.24944 -9.12066 -9.07698 -8.78869 -8.62246 -8.55857 -7.92789 -6.13862 -4.23456 1.13969 1.27138 1.55488 3.24223 3.29746 3.30498 3.35753 3.57829 4.12588 4.37656 4.54517 4.78979 5.00331 5.12776 5.18648 5.19455 5.29909 5.40911 5.43512 5.70083 5.73960 5.83636 5.93249 6.10140 6.16166 6.35859 6.56298 6.78998 6.81884 6.93618 7.12948 7.43918 7.53883 7.67485 7.89581 8.13322 8.64357 8.76065 9.10266 9.44264 10.92036 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002808 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.087950 B = 9967.882054 C =10400.352475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.505 3.495 14 O -0.547 6.547 15 C -0.078 4.078 16 H 0.101 0.899 17 C -0.139 4.139 18 C -0.049 4.049 19 C -0.066 4.066 20 C -0.116 4.116 21 C -0.096 4.096 22 C -0.093 4.093 23 Br -0.062 7.062 24 C -0.086 4.086 25 H 0.014 0.986 26 H 0.026 0.974 27 H 0.090 0.910 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -2.434 -20.589 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.354 5.354 13 C 0.289 3.711 14 O -0.425 6.425 15 C -0.100 4.100 16 H 0.119 0.881 17 C -0.196 4.196 18 C -0.051 4.051 19 C -0.084 4.084 20 C -0.135 4.135 21 C -0.116 4.116 22 C -0.172 4.172 23 Br 0.023 6.977 24 C -0.106 4.106 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.454 -1.318 -20.759 21.504 hybrid contribution 0.111 -0.915 1.174 1.493 sum 5.565 -2.233 -19.585 20.482 Atomic orbital electron populations 1.22070 0.98481 0.99055 1.00853 1.18730 0.90990 0.93964 0.79976 0.93430 1.21183 1.32558 1.13263 0.90369 0.92140 1.24888 0.94793 0.94939 0.99059 1.69889 1.35759 1.22420 1.24012 0.86507 0.79193 0.79579 0.81817 1.20165 1.21121 1.20147 1.46506 1.65001 1.13502 1.10424 1.20177 0.78924 0.87471 0.84498 1.90680 1.50982 1.15882 1.84961 1.20391 1.02050 0.95406 0.92148 0.88102 1.21773 0.99070 0.96517 1.02248 1.19377 0.92892 0.97440 0.95373 1.21116 0.98568 0.94299 0.94406 1.21119 0.97524 0.98469 0.96406 1.21035 0.91373 0.99107 1.00044 1.21619 0.91709 1.03465 1.00390 1.96669 1.27327 1.95173 1.78508 1.20945 0.98016 0.97112 0.94480 0.96723 0.95492 0.89187 0.92502 0.77937 0.91692 0.91878 0.91307 0.85444 0.85234 0.85372 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.64 2.56 -69.09 -0.18 6.46 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.71 -14.18 4.96 -54.93 -0.27 -14.45 16 13 C 0.51 9.64 6.99 -10.98 -0.08 9.56 16 14 O -0.55 -12.65 14.79 5.56 0.08 -12.57 16 15 C -0.08 -1.08 2.90 -92.92 -0.27 -1.35 16 16 H 0.10 1.21 7.87 -51.93 -0.41 0.80 16 17 C -0.14 -1.54 8.90 37.16 0.33 -1.21 16 18 C -0.05 -0.69 4.39 -104.63 -0.46 -1.15 16 19 C -0.07 -0.91 7.94 -39.58 -0.31 -1.22 16 20 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 21 C -0.10 -1.12 9.79 -39.56 -0.39 -1.51 16 22 C -0.09 -1.16 6.22 -39.52 -0.25 -1.41 16 23 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.98 16 24 C -0.09 -1.12 9.41 -39.56 -0.37 -1.49 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 6.68 7.96 -40.82 -0.32 6.35 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.73 7.38 -51.93 -0.38 0.34 16 32 H 0.07 0.72 7.57 -51.93 -0.39 0.32 16 33 H 0.13 1.79 7.52 -52.49 -0.39 1.40 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.50 7.95 -52.48 -0.42 1.09 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -30.21 324.55 -9.09 -39.30 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.68 Total: 5.47 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.42 Total: -10.98 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.35 Total: -38.59 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.21 -9.09 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292249853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.704 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds