Wall clock time and date at job start Tue Mar 31 2020 14:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46811 * 2 1 4 4 C 1.50692 * 109.47290 * 120.00136 * 2 1 3 5 5 H 1.08001 * 120.00450 * 120.00479 * 4 2 1 6 6 C 1.37881 * 120.00355 * 299.99783 * 4 2 1 7 7 N 1.31516 * 119.99674 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00391 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46989 * 60.00312 * 8 6 4 10 10 H 1.48496 * 109.47338 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47104 * 300.00330 * 8 6 4 12 12 N 1.46496 * 109.47001 * 240.00518 * 2 1 3 13 13 C 1.34774 * 120.00339 * 84.99506 * 12 2 1 14 14 O 1.21282 * 119.99971 * 359.97438 * 13 12 2 15 15 C 1.50706 * 120.00164 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.46456 * 299.99542 * 15 13 12 17 17 C 1.52997 * 109.47238 * 59.99708 * 15 13 12 18 18 C 1.50697 * 109.47178 * 180.02562 * 15 13 12 19 19 C 1.38268 * 119.99264 * 299.72409 * 18 15 13 20 20 C 1.38221 * 120.01668 * 179.72957 * 19 18 15 21 21 C 1.38236 * 120.01411 * 0.54233 * 20 19 18 22 22 C 1.38308 * 119.98579 * 359.73303 * 21 20 19 23 23 Br 1.89096 * 120.00818 * 180.02562 * 22 21 20 24 24 C 1.38194 * 120.00021 * 119.99526 * 18 15 13 25 25 H 1.08994 * 109.47420 * 60.00001 * 1 2 3 26 26 H 1.09007 * 109.46811 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46925 * 299.99738 * 1 2 3 28 28 H 0.96995 * 120.00425 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99865 * 264.99923 * 12 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 17 15 13 31 31 H 1.09001 * 109.46832 * 60.00314 * 17 15 13 32 32 H 1.09004 * 109.47261 * 300.00295 * 17 15 13 33 33 H 1.08001 * 119.98616 * 359.97438 * 19 18 15 34 34 H 1.08008 * 119.98891 * 180.27212 * 20 19 18 35 35 H 1.07999 * 120.00900 * 179.70525 * 21 20 19 36 36 H 1.08010 * 120.00005 * 0.02739 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 3.8077 -1.1189 4.0076 10 1 1.8282 -0.4193 5.2204 11 1 1.8283 -2.5198 4.0081 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8580 1.1585 -2.4117 15 6 2.6487 -0.7286 -3.5879 16 1 3.6479 -1.1210 -3.3987 17 6 1.7043 -1.8822 -3.9315 18 6 2.7000 0.2399 -4.7412 19 6 1.5441 0.8655 -5.1704 20 6 1.5915 1.7582 -6.2246 21 6 2.7927 2.0174 -6.8577 22 6 3.9483 1.3875 -6.4324 23 35 5.5919 1.7421 -7.2974 24 6 3.9013 0.4984 -5.3735 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7083 1.1608 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 2.0675 -2.3964 -4.8214 31 1 0.7051 -1.4897 -4.1206 32 1 1.6676 -2.5827 -3.0971 33 1 0.6046 0.6596 -4.6791 34 1 0.6890 2.2500 -6.5566 35 1 2.8289 2.7113 -7.6844 36 1 4.8034 0.0060 -5.0413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292249853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:31 Heat of formation + Delta-G solvation = -41.855384 kcal Electronic energy + Delta-G solvation = -19295.048552 eV Core-core repulsion = 16210.017033 eV Total energy + Delta-G solvation = -3085.031519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25803 -39.73073 -36.72689 -35.30474 -34.24134 -33.05868 -31.35031 -30.46678 -29.62364 -27.33059 -25.75677 -23.68633 -23.47765 -21.99625 -20.78490 -18.84089 -17.88735 -17.52191 -17.12548 -16.43885 -16.29283 -15.72453 -15.54554 -14.85299 -14.67113 -14.38278 -14.29634 -14.11096 -13.76953 -13.30423 -13.10999 -12.98055 -12.84929 -12.74892 -12.58708 -12.25551 -12.16170 -12.06799 -11.95109 -11.72470 -11.26308 -11.10430 -10.66407 -10.52366 -9.84917 -9.71504 -9.59863 -8.16987 -6.34666 0.15242 0.30062 0.62136 1.45413 1.47329 1.55083 1.85108 2.34333 2.51439 2.84743 3.13421 3.50632 3.81074 4.01478 4.12807 4.18997 4.26094 4.33978 4.47381 4.70992 4.77481 4.84472 4.92274 4.92734 4.98203 5.11185 5.18321 5.25129 5.38547 5.45112 5.56377 5.62416 5.70920 5.84512 5.92656 6.11433 6.73649 6.99626 7.33364 7.58904 8.88972 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002808 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.087950 B = 9967.882054 C =10400.352475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.703 5.703 13 C 0.502 3.498 14 O -0.592 6.592 15 C -0.065 4.065 16 H 0.124 0.876 17 C -0.134 4.134 18 C -0.066 4.066 19 C -0.084 4.084 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.103 4.103 23 Br -0.048 7.048 24 C -0.093 4.093 25 H 0.012 0.988 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -4.097 -21.552 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.352 5.352 13 C 0.289 3.711 14 O -0.473 6.473 15 C -0.086 4.086 16 H 0.142 0.858 17 C -0.192 4.192 18 C -0.068 4.068 19 C -0.102 4.102 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.182 4.182 23 Br 0.037 6.963 24 C -0.113 4.113 25 H 0.031 0.969 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.489 -3.024 -21.752 22.900 hybrid contribution -0.189 -0.317 1.390 1.438 sum 6.300 -3.341 -20.362 21.575 Atomic orbital electron populations 1.21878 0.98284 0.99447 0.99459 1.18297 0.91102 0.91760 0.82009 0.98702 1.21543 1.32610 1.13609 0.90851 0.90777 1.25804 0.94875 0.95565 1.02353 1.70049 1.36993 1.23975 1.24631 0.85407 0.78635 0.78774 0.77589 1.19619 1.21315 1.18722 1.46243 1.65181 1.14194 1.09562 1.21119 0.77537 0.87046 0.85422 1.90655 1.52700 1.18190 1.85769 1.20353 1.03497 0.95643 0.89135 0.85787 1.21792 0.98033 0.95572 1.03763 1.19468 0.93389 0.98141 0.95783 1.21204 0.98321 0.95396 0.95325 1.21397 0.98722 0.97868 0.95730 1.21337 0.90923 0.98946 1.00303 1.21835 0.92642 1.03344 1.00417 1.96677 1.26428 1.95081 1.78123 1.21114 0.98073 0.97380 0.94702 0.96912 0.93993 0.91722 0.92595 0.75979 0.89069 0.92698 0.90399 0.86533 0.83062 0.83188 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 9.26 71.98 0.67 -5.94 16 2 C 0.27 13.94 2.56 44.24 0.11 14.05 16 3 H 0.00 -0.30 7.58 -2.38 -0.02 -0.32 16 4 C -0.55 -28.68 8.73 25.60 0.22 -28.45 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 12 N -0.70 -28.12 4.96 -446.10 -2.21 -30.33 16 13 C 0.50 19.20 6.99 87.66 0.61 19.81 16 14 O -0.59 -28.27 14.79 -3.04 -0.04 -28.32 16 15 C -0.07 -1.70 2.90 -12.29 -0.04 -1.74 16 16 H 0.12 2.67 7.87 -2.39 -0.02 2.65 16 17 C -0.13 -2.70 8.90 71.98 0.64 -2.06 16 18 C -0.07 -1.80 4.39 -19.87 -0.09 -1.89 16 19 C -0.08 -2.30 7.94 22.27 0.18 -2.12 16 20 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 21 C -0.10 -2.07 9.79 22.29 0.22 -1.85 16 22 C -0.10 -2.41 6.22 22.31 0.14 -2.27 16 23 Br -0.05 -0.98 33.70 -20.37 -0.69 -1.67 16 24 C -0.09 -2.29 9.41 22.28 0.21 -2.08 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.06 3.57 6.07 -2.39 -0.01 3.56 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.40 13.37 7.96 -92.70 -0.74 12.63 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.20 7.38 -2.39 -0.02 1.18 16 32 H 0.08 1.42 7.57 -2.38 -0.02 1.40 16 33 H 0.12 3.36 7.52 -2.91 -0.02 3.34 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.14 3.02 7.95 -2.91 -0.02 3.00 16 Total: -1.00 -66.62 324.55 3.23 -63.40 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.35 Total: 21.51 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.55 Total: -15.83 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.97 Total: -82.72 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.04 Total: -28.32 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -0.69 Total: -1.67 kcal Total: -66.62 3.23 -63.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292249853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.541 kcal (2) G-P(sol) polarization free energy of solvation -66.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds