Wall clock time and date at job start Tue Mar 31 2020 14:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47129 * 2 1 4 4 C 1.50706 * 109.47322 * 119.99575 * 2 1 3 5 5 O 1.21271 * 119.99956 * 120.00340 * 4 2 1 6 6 N 1.34780 * 119.99887 * 300.00166 * 4 2 1 7 7 C 1.46495 * 119.99743 * 180.02562 * 6 4 2 8 8 H 1.09007 * 109.47115 * 324.99610 * 7 6 4 9 9 C 1.52991 * 109.47428 * 85.00370 * 7 6 4 10 10 C 1.50704 * 109.46756 * 205.00456 * 7 6 4 11 11 H 1.07999 * 120.00056 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99861 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99959 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00161 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46735 * 59.99897 * 14 12 10 16 16 H 1.48500 * 109.47485 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47401 * 300.00425 * 14 12 10 18 18 C 1.50702 * 109.47492 * 239.99995 * 2 1 3 19 19 C 1.38264 * 119.99053 * 300.01738 * 18 2 1 20 20 C 1.38218 * 120.02064 * 179.97438 * 19 18 2 21 21 C 1.38241 * 120.00795 * 359.97438 * 20 19 18 22 22 C 1.38307 * 119.99034 * 359.77076 * 21 20 19 23 23 Br 1.89098 * 120.01067 * 180.24672 * 22 21 20 24 24 C 1.38195 * 119.99764 * 119.99954 * 18 2 1 25 25 H 1.08997 * 109.46963 * 300.00173 * 1 2 3 26 26 H 1.08999 * 109.47412 * 60.00342 * 1 2 3 27 27 H 1.09005 * 109.46671 * 180.02562 * 1 2 3 28 28 H 0.96997 * 119.99737 * 0.02562 * 6 4 2 29 29 H 1.09003 * 109.47074 * 299.99288 * 9 7 6 30 30 H 1.08997 * 109.47447 * 59.99571 * 9 7 6 31 31 H 1.08999 * 109.47343 * 179.97438 * 9 7 6 32 32 H 0.97008 * 119.99960 * 180.02562 * 13 12 10 33 33 H 1.07999 * 119.98996 * 0.02562 * 19 18 2 34 34 H 1.08000 * 119.99768 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.00465 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.00237 * 359.97099 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6963 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.1956 -0.9400 3.6508 8 1 2.2327 -2.0128 3.4616 9 6 3.5979 -0.4339 3.9944 10 6 1.2657 -0.6652 4.8045 11 1 0.3977 -0.0388 4.6611 12 6 1.5237 -1.2128 6.0433 13 7 2.5810 -1.9752 6.2180 14 14 0.3715 -0.8717 7.4735 15 1 -0.9898 -1.3631 7.1405 16 1 0.8669 -1.5714 8.6860 17 1 0.3209 0.5899 7.7308 18 6 2.0324 -0.7104 -1.2304 19 6 1.6980 -2.0340 -1.4493 20 6 2.1581 -2.6860 -2.5778 21 6 2.9523 -2.0147 -3.4886 22 6 3.2827 -0.6892 -3.2728 23 35 4.3634 0.2317 -4.5218 24 6 2.8269 -0.0387 -2.1400 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.1488 0.5386 2.5435 29 1 4.2705 -0.6327 3.1600 30 1 3.5608 0.6389 4.1836 31 1 3.9614 -0.9471 4.8846 32 1 2.7623 -2.3607 7.0895 33 1 1.0765 -2.5584 -0.7385 34 1 1.8963 -3.7198 -2.7486 35 1 3.3114 -2.5241 -4.3706 36 1 3.0874 0.9954 -1.9694 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292249856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:36 Heat of formation + Delta-G solvation = -24.644942 kcal Electronic energy + Delta-G solvation = -19289.473317 eV Core-core repulsion = 16205.188099 eV Total energy + Delta-G solvation = -3084.285218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00910 -38.41960 -34.91497 -34.09192 -32.42864 -32.05462 -30.15170 -29.10039 -28.35970 -25.28912 -24.64857 -22.52851 -22.20625 -20.41636 -19.23056 -17.26099 -16.80528 -15.90245 -15.47549 -15.26971 -14.87449 -14.32110 -14.14856 -13.51217 -13.37163 -13.33549 -13.07571 -12.51603 -12.23370 -12.07714 -11.82809 -11.56361 -11.17864 -11.07709 -11.00878 -10.91353 -10.79979 -10.72074 -10.37168 -10.33607 -10.24970 -9.12213 -9.07451 -8.78815 -8.62411 -8.56209 -7.92660 -6.14055 -4.23775 1.14141 1.27115 1.55044 3.23713 3.29245 3.29954 3.35722 3.57964 4.12862 4.36896 4.54868 4.79058 5.00595 5.13689 5.17851 5.20477 5.30760 5.41063 5.43851 5.70787 5.75523 5.84199 5.94080 6.11288 6.17219 6.36612 6.56757 6.79627 6.82339 6.95440 7.13784 7.44043 7.54029 7.67403 7.89535 8.13392 8.64249 8.75794 9.10157 9.43973 10.91773 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.002694 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.294535 B =10390.422375 C =10563.240387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 H 0.100 0.900 4 C 0.505 3.495 5 O -0.547 6.547 6 N -0.707 5.707 7 C 0.265 3.735 8 H 0.048 0.952 9 C -0.147 4.147 10 C -0.535 4.535 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.901 3.099 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.050 4.050 19 C -0.065 4.065 20 C -0.116 4.116 21 C -0.096 4.096 22 C -0.093 4.093 23 Br -0.062 7.062 24 C -0.086 4.086 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.388 0.612 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 4.798 -20.840 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.118 0.882 4 C 0.289 3.711 5 O -0.425 6.425 6 N -0.354 5.354 7 C 0.164 3.836 8 H 0.066 0.934 9 C -0.206 4.206 10 C -0.573 4.573 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.521 5.521 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.051 4.051 19 C -0.083 4.083 20 C -0.135 4.135 21 C -0.115 4.115 22 C -0.172 4.172 23 Br 0.023 6.977 24 C -0.106 4.106 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.221 0.779 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.139 4.312 -21.194 21.628 hybrid contribution -0.951 0.383 1.211 1.586 sum -1.089 4.694 -19.983 20.556 Atomic orbital electron populations 1.21776 0.92068 1.03118 1.02688 1.20394 0.97730 1.00250 0.91585 0.88171 1.20180 0.81195 0.85065 0.84638 1.90677 1.38521 1.26636 1.86668 1.46508 1.51481 1.31144 1.06308 1.18728 0.91496 0.93316 0.80084 0.93402 1.22079 0.97958 0.99280 1.01280 1.21181 1.09775 1.32180 0.94202 0.92133 1.24889 0.95427 0.94689 0.98680 1.69897 1.26184 1.31956 1.24028 0.86512 0.80841 0.78445 0.81316 1.20172 1.21126 1.20148 1.19381 0.96936 0.94375 0.94430 1.21128 0.97707 0.93656 0.95829 1.21125 0.98066 1.00058 0.94275 1.21037 0.98085 0.92516 0.99906 1.21617 1.02962 0.95933 0.96715 1.96667 1.67387 1.76630 1.57029 1.20937 0.96904 1.00107 0.92619 0.91245 0.91731 0.91807 0.77937 0.96681 0.95503 0.89162 0.92502 0.85373 0.85217 0.85376 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.90 37.16 0.33 -1.25 16 2 C -0.08 -1.07 2.90 -92.92 -0.27 -1.34 16 3 H 0.10 1.19 7.88 -51.93 -0.41 0.78 16 4 C 0.51 9.63 6.99 -10.98 -0.08 9.55 16 5 O -0.55 -12.64 14.77 5.56 0.08 -12.56 16 6 N -0.71 -14.18 4.96 -54.93 -0.27 -14.45 16 7 C 0.27 6.65 2.56 -69.09 -0.18 6.47 16 8 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 9 C -0.15 -3.66 9.26 37.15 0.34 -3.32 16 10 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 13 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 14 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 C -0.05 -0.70 4.40 -104.63 -0.46 -1.16 16 19 C -0.06 -0.91 7.93 -39.58 -0.31 -1.22 16 20 C -0.12 -1.41 10.05 -39.59 -0.40 -1.80 16 21 C -0.10 -1.12 9.79 -39.55 -0.39 -1.51 16 22 C -0.09 -1.16 6.22 -39.52 -0.25 -1.40 16 23 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 16 24 C -0.09 -1.11 9.41 -39.56 -0.37 -1.49 16 25 H 0.07 0.75 7.56 -51.93 -0.39 0.35 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.76 7.39 -51.93 -0.38 0.38 16 28 H 0.39 6.67 7.96 -40.82 -0.32 6.35 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.13 1.83 7.52 -52.49 -0.39 1.44 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.48 7.95 -52.49 -0.42 1.06 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -30.11 324.53 -9.09 -39.20 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.68 Total: 5.66 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.42 Total: -11.04 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.35 Total: -38.55 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.11 -9.09 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292249856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.560 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds