Wall clock time and date at job start Tue Mar 31 2020 14:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47277 * 2 1 4 4 C 1.50705 * 109.46998 * 119.99429 * 2 1 3 5 5 H 1.07999 * 119.99865 * 120.00510 * 4 2 1 6 6 C 1.37879 * 120.00305 * 300.00165 * 4 2 1 7 7 N 1.31517 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47358 * 119.99650 * 8 6 4 11 11 H 1.48503 * 109.47324 * 239.99846 * 8 6 4 12 12 N 1.46499 * 109.47390 * 239.99475 * 2 1 3 13 13 C 1.46494 * 119.99774 * 305.44542 * 12 2 1 14 14 C 1.38700 * 119.99887 * 125.43845 * 12 2 1 15 15 C 1.40617 * 119.75376 * 11.24172 * 14 12 2 16 16 N 1.31109 * 120.60872 * 179.72082 * 15 14 12 17 17 C 1.33904 * 119.86585 * 359.97438 * 16 15 14 18 18 C 1.40521 * 120.94545 * 180.02562 * 17 16 15 19 19 C 1.36195 * 119.75314 * 179.97438 * 18 17 16 20 20 Cl 1.73597 * 119.54667 * 179.97438 * 19 18 17 21 21 C 1.39574 * 120.90208 * 359.97438 * 19 18 17 22 22 Cl 1.73608 * 119.55471 * 180.02562 * 21 19 18 23 23 C 1.36210 * 120.89102 * 359.97438 * 21 19 18 24 24 C 1.40502 * 119.74175 * 0.04560 * 23 21 19 25 25 N 1.31944 * 119.75320 * 190.96999 * 14 12 2 26 26 H 1.08999 * 109.46964 * 60.00149 * 1 2 3 27 27 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46754 * 300.00385 * 1 2 3 29 29 H 0.97001 * 120.00064 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46724 * 269.99387 * 13 12 2 31 31 H 1.08996 * 109.47525 * 29.99395 * 13 12 2 32 32 H 1.09000 * 109.47342 * 149.99983 * 13 12 2 33 33 H 1.07994 * 119.69484 * 359.69955 * 15 14 12 34 34 H 1.08000 * 120.12161 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.12710 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.1474 -2.2860 3.6040 10 1 3.1472 -0.1854 4.8161 11 1 1.1678 -1.5863 4.8167 12 7 2.0184 -0.6907 -1.1961 13 6 1.5689 -2.0537 -1.4896 14 6 2.9062 -0.0540 -2.0506 15 6 3.5173 1.1483 -1.6526 16 7 4.3632 1.7613 -2.4448 17 6 4.6508 1.2404 -3.6444 18 6 5.5544 1.8781 -4.5112 19 6 5.8296 1.3266 -5.7257 20 17 6.9463 2.1192 -6.7927 21 6 5.2261 0.1328 -6.1242 22 17 5.6029 -0.5396 -7.6798 23 6 4.3464 -0.5123 -5.3086 24 6 4.0387 0.0283 -4.0488 25 7 3.1752 -0.5839 -3.2287 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7095 1.1621 3.4844 30 1 2.2469 -2.7683 -1.0227 31 1 0.5626 -2.1972 -1.0961 32 1 1.5630 -2.2100 -2.5683 33 1 3.2874 1.5707 -0.6857 34 1 6.0289 2.8021 -4.2155 35 1 3.8868 -1.4356 -5.6293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302144114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:19 Heat of formation + Delta-G solvation = 64.991589 kcal Electronic energy + Delta-G solvation = -22147.793029 eV Core-core repulsion = 18618.991249 eV Total energy + Delta-G solvation = -3528.801780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16671 -38.43477 -37.02579 -36.62810 -35.65364 -34.46241 -32.95617 -30.57926 -30.21226 -29.06206 -26.69931 -25.44478 -24.30535 -23.23647 -22.29954 -20.65253 -18.30133 -18.10835 -17.24093 -16.58193 -15.99768 -15.36175 -15.13627 -14.85204 -14.58814 -13.99702 -13.94190 -13.67209 -13.13180 -12.92314 -12.74195 -12.37305 -12.09636 -11.79848 -11.69991 -11.41178 -11.26543 -11.23181 -11.13027 -11.04631 -10.98424 -10.87239 -10.83007 -10.42192 -10.32437 -9.61089 -8.99315 -8.84718 -8.68194 -8.60351 -7.09525 -6.32201 -4.43622 0.26963 0.71280 1.71499 2.06946 2.08605 2.68910 3.12768 3.22281 3.24320 3.39879 4.16783 4.20864 4.33449 4.42201 4.47542 4.80748 4.98580 5.07552 5.23393 5.46061 5.69220 5.72752 5.78990 5.86079 6.04770 6.12757 6.26765 6.38765 6.50101 6.57189 6.68999 6.96359 7.22113 7.43638 7.63020 7.69322 7.85444 8.03598 8.22412 8.63021 9.25619 10.70988 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.002914 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.512708 B = 9607.007066 C =10103.072753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.260 3.740 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.552 5.552 13 C 0.095 3.905 14 C 0.392 3.608 15 C 0.074 3.926 16 N -0.401 5.401 17 C 0.006 3.994 18 C -0.025 4.025 19 C -0.063 4.063 20 Cl -0.056 7.056 21 C -0.001 4.001 22 Cl -0.052 7.052 23 C -0.088 4.088 24 C 0.163 3.837 25 N -0.533 5.533 26 H 0.016 0.984 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.267 0.733 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.187 0.813 34 H 0.150 0.850 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 -0.229 -13.910 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.573 4.573 5 H 0.083 0.917 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.258 5.258 13 C -0.048 4.048 14 C 0.139 3.861 15 C -0.112 4.112 16 N -0.113 5.113 17 C -0.117 4.117 18 C -0.045 4.045 19 C -0.093 4.093 20 Cl -0.028 7.028 21 C -0.031 4.031 22 Cl -0.023 7.023 23 C -0.110 4.110 24 C 0.035 3.965 25 N -0.261 5.261 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.204 0.796 34 H 0.168 0.832 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.587 -0.181 -13.987 15.063 hybrid contribution 0.338 -0.513 0.749 0.968 sum 5.925 -0.693 -13.238 14.520 Atomic orbital electron populations 1.22151 0.97112 1.00321 1.01372 1.19263 0.91819 0.93132 0.79793 0.92812 1.21349 1.32514 1.13680 0.89752 0.91743 1.24886 0.94551 0.94879 0.99127 1.69849 1.35803 1.22393 1.24285 0.86379 0.78740 0.79697 0.82328 1.19683 1.20686 1.20766 1.47501 1.41036 1.14637 1.22612 1.21566 1.00086 0.82317 1.00848 1.19784 0.88481 0.89882 0.87982 1.24084 0.93318 0.93047 1.00718 1.68571 1.11084 1.29752 1.01875 1.19078 1.02265 0.95814 0.94546 1.20450 0.94794 0.99268 0.89967 1.20042 0.99860 0.95436 0.93933 1.98366 1.60404 1.79369 1.64620 1.20265 0.99397 0.94299 0.89105 1.98380 1.93453 1.84572 1.25911 1.20397 0.97902 1.00945 0.91731 1.19000 0.92542 0.91309 0.93692 1.68320 1.19893 1.34616 1.03283 0.96516 0.94325 0.88176 0.92327 0.93175 0.90906 0.91262 0.79646 0.83226 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.83 37.16 0.33 -2.79 16 2 C 0.26 5.53 2.48 -69.08 -0.17 5.36 16 3 H 0.05 1.19 5.50 -51.93 -0.29 0.91 16 4 C -0.53 -12.68 8.46 -34.44 -0.29 -12.97 16 5 H 0.06 1.57 7.80 -52.49 -0.41 1.16 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -22.10 11.32 55.43 0.63 -21.47 16 8 Si 0.90 19.31 29.54 -169.99 -5.02 14.29 16 9 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 12 N -0.55 -10.55 2.86 -175.15 -0.50 -11.05 16 13 C 0.10 1.60 10.03 59.84 0.60 2.20 16 14 C 0.39 7.32 7.34 -155.14 -1.14 6.18 16 15 C 0.07 1.34 10.38 -16.96 -0.18 1.17 16 16 N -0.40 -7.03 10.45 -10.61 -0.11 -7.14 16 17 C 0.01 0.10 6.59 -84.79 -0.56 -0.45 16 18 C -0.02 -0.34 9.72 -39.46 -0.38 -0.72 16 19 C -0.06 -0.81 6.28 -39.82 -0.25 -1.06 16 20 Cl -0.06 -0.64 27.87 -51.86 -1.45 -2.09 16 21 C 0.00 -0.02 6.28 -39.81 -0.25 -0.27 16 22 Cl -0.05 -0.59 27.87 -51.86 -1.45 -2.04 16 23 C -0.09 -1.23 9.72 -39.46 -0.38 -1.61 16 24 C 0.16 2.69 6.59 -84.80 -0.56 2.13 16 25 N -0.53 -9.54 9.17 -10.03 -0.09 -9.63 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.76 6.51 -51.93 -0.34 0.42 16 28 H 0.10 2.29 6.07 -51.92 -0.32 1.97 16 29 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.18 6.16 -51.93 -0.32 0.86 16 32 H 0.07 1.09 7.24 -51.93 -0.38 0.71 16 33 H 0.19 3.33 5.95 -52.49 -0.31 3.02 16 34 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -24.39 324.34 -9.61 -34.00 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.18 Total: 1.49 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -3.33 Total: -1.25 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.08 Total: -49.29 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -2.89 Total: -4.13 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.39 -9.61 -34.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302144114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.988 kcal (2) G-P(sol) polarization free energy of solvation -24.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds