Wall clock time and date at job start Tue Mar 31 2020 14:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47277 * 2 1 4 4 C 1.50705 * 109.46998 * 119.99429 * 2 1 3 5 5 H 1.07999 * 119.99865 * 120.00510 * 4 2 1 6 6 C 1.37879 * 120.00305 * 300.00165 * 4 2 1 7 7 N 1.31517 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47358 * 119.99650 * 8 6 4 11 11 H 1.48503 * 109.47324 * 239.99846 * 8 6 4 12 12 N 1.46499 * 109.47390 * 239.99475 * 2 1 3 13 13 C 1.46494 * 119.99774 * 305.44542 * 12 2 1 14 14 C 1.38700 * 119.99887 * 125.43845 * 12 2 1 15 15 C 1.40617 * 119.75376 * 11.24172 * 14 12 2 16 16 N 1.31109 * 120.60872 * 179.72082 * 15 14 12 17 17 C 1.33904 * 119.86585 * 359.97438 * 16 15 14 18 18 C 1.40521 * 120.94545 * 180.02562 * 17 16 15 19 19 C 1.36195 * 119.75314 * 179.97438 * 18 17 16 20 20 Cl 1.73597 * 119.54667 * 179.97438 * 19 18 17 21 21 C 1.39574 * 120.90208 * 359.97438 * 19 18 17 22 22 Cl 1.73608 * 119.55471 * 180.02562 * 21 19 18 23 23 C 1.36210 * 120.89102 * 359.97438 * 21 19 18 24 24 C 1.40502 * 119.74175 * 0.04560 * 23 21 19 25 25 N 1.31944 * 119.75320 * 190.96999 * 14 12 2 26 26 H 1.08999 * 109.46964 * 60.00149 * 1 2 3 27 27 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46754 * 300.00385 * 1 2 3 29 29 H 0.97001 * 120.00064 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.46724 * 269.99387 * 13 12 2 31 31 H 1.08996 * 109.47525 * 29.99395 * 13 12 2 32 32 H 1.09000 * 109.47342 * 149.99983 * 13 12 2 33 33 H 1.07994 * 119.69484 * 359.69955 * 15 14 12 34 34 H 1.08000 * 120.12161 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.12710 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.1474 -2.2860 3.6040 10 1 3.1472 -0.1854 4.8161 11 1 1.1678 -1.5863 4.8167 12 7 2.0184 -0.6907 -1.1961 13 6 1.5689 -2.0537 -1.4896 14 6 2.9062 -0.0540 -2.0506 15 6 3.5173 1.1483 -1.6526 16 7 4.3632 1.7613 -2.4448 17 6 4.6508 1.2404 -3.6444 18 6 5.5544 1.8781 -4.5112 19 6 5.8296 1.3266 -5.7257 20 17 6.9463 2.1192 -6.7927 21 6 5.2261 0.1328 -6.1242 22 17 5.6029 -0.5396 -7.6798 23 6 4.3464 -0.5123 -5.3086 24 6 4.0387 0.0283 -4.0488 25 7 3.1752 -0.5839 -3.2287 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7095 1.1621 3.4844 30 1 2.2469 -2.7683 -1.0227 31 1 0.5626 -2.1972 -1.0961 32 1 1.5630 -2.2100 -2.5683 33 1 3.2874 1.5707 -0.6857 34 1 6.0289 2.8021 -4.2155 35 1 3.8868 -1.4356 -5.6293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302144114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:18 Heat of formation + Delta-G solvation = 54.715983 kcal Electronic energy + Delta-G solvation = -22148.238613 eV Core-core repulsion = 18618.991249 eV Total energy + Delta-G solvation = -3529.247363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45685 -39.68170 -38.30585 -37.63712 -36.83945 -35.86494 -34.60725 -31.85290 -31.59336 -30.50112 -28.04582 -27.24215 -25.58455 -24.61156 -23.52385 -22.16144 -19.60746 -19.39633 -18.62000 -18.28565 -17.28622 -16.62985 -16.52951 -16.41232 -15.82118 -15.36832 -15.12600 -15.05762 -14.56194 -14.32258 -13.94741 -13.57193 -13.47165 -13.15849 -13.13710 -12.95701 -12.69880 -12.64657 -12.60337 -12.36677 -12.24335 -12.22164 -12.07811 -11.97477 -11.94192 -11.21074 -10.55232 -10.34501 -10.16026 -9.75097 -8.52868 -8.12302 -6.31751 -0.94940 -0.52419 0.67666 0.79126 1.01547 1.41987 1.46346 1.48567 1.55342 1.96827 2.43280 2.87384 3.07312 3.12897 3.17390 3.25665 3.57895 3.78702 4.05941 4.30378 4.40887 4.45979 4.60321 4.68479 4.70074 4.76277 4.91299 4.99327 5.00343 5.03720 5.18946 5.35789 5.62839 5.72461 5.99527 6.08848 6.30772 6.52488 6.70484 6.90460 7.39911 8.86198 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.002914 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.512708 B = 9607.007066 C =10103.072753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.266 3.734 3 H 0.041 0.959 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.031 3.969 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.564 5.564 13 C 0.100 3.900 14 C 0.380 3.620 15 C 0.057 3.943 16 N -0.404 5.404 17 C -0.004 4.004 18 C -0.026 4.026 19 C -0.053 4.053 20 Cl -0.036 7.036 21 C 0.005 3.995 22 Cl -0.031 7.031 23 C -0.086 4.086 24 C 0.145 3.855 25 N -0.532 5.532 26 H 0.028 0.972 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.179 0.821 34 H 0.167 0.833 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -0.585 -15.785 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.165 3.835 3 H 0.059 0.941 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.272 5.272 13 C -0.043 4.043 14 C 0.128 3.872 15 C -0.128 4.128 16 N -0.115 5.115 17 C -0.129 4.129 18 C -0.046 4.046 19 C -0.084 4.084 20 Cl -0.007 7.007 21 C -0.025 4.025 22 Cl -0.002 7.002 23 C -0.108 4.108 24 C 0.018 3.982 25 N -0.260 5.260 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.196 0.804 34 H 0.184 0.816 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.689 -0.540 -15.887 17.246 hybrid contribution 0.175 -0.362 1.045 1.120 sum 6.863 -0.903 -14.842 16.377 Atomic orbital electron populations 1.21980 0.96700 1.00449 1.00756 1.18970 0.92021 0.92438 0.80030 0.94104 1.21533 1.32101 1.13295 0.90952 0.92801 1.25469 0.94870 0.95480 1.01235 1.69940 1.36667 1.23310 1.24642 0.85580 0.78146 0.78610 0.79725 1.19838 1.20785 1.20505 1.47282 1.42106 1.15329 1.22446 1.21590 1.00031 0.81227 1.01466 1.19796 0.88838 0.90217 0.88357 1.23931 0.94392 0.93553 1.00883 1.68532 1.10761 1.29878 1.02378 1.19400 1.02837 0.96147 0.94480 1.20582 0.94362 0.99808 0.89859 1.20152 0.99297 0.95144 0.93775 1.98383 1.59535 1.78966 1.63795 1.20354 0.98438 0.93989 0.89715 1.98396 1.93184 1.84253 1.24322 1.20503 0.98027 1.01466 0.90757 1.19322 0.92715 0.91714 0.94498 1.68285 1.19982 1.34712 1.03041 0.95336 0.93771 0.90419 0.92357 0.93624 0.90546 0.90180 0.80399 0.81583 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 8.83 71.98 0.64 -5.22 16 2 C 0.27 11.59 2.48 44.25 0.11 11.70 16 3 H 0.04 1.89 5.50 -2.38 -0.01 1.88 16 4 C -0.54 -26.05 8.46 25.60 0.22 -25.83 16 5 H 0.05 2.66 7.80 -2.91 -0.02 2.64 16 6 C 0.03 1.50 5.30 84.65 0.45 1.95 16 7 N -0.91 -45.98 11.32 21.45 0.24 -45.74 16 8 Si 0.95 39.87 29.54 68.60 2.03 41.89 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.56 -21.80 2.86 -708.05 -2.02 -23.83 16 13 C 0.10 3.33 10.03 127.77 1.28 4.61 16 14 C 0.38 14.34 7.34 133.67 0.98 15.32 16 15 C 0.06 2.12 10.38 85.38 0.89 3.00 16 16 N -0.40 -14.14 10.45 -187.49 -1.96 -16.10 16 17 C 0.00 -0.14 6.59 40.24 0.27 0.12 16 18 C -0.03 -0.67 9.72 22.35 0.22 -0.45 16 19 C -0.05 -1.24 6.28 22.12 0.14 -1.10 16 20 Cl -0.04 -0.71 27.87 -2.72 -0.08 -0.79 16 21 C 0.00 0.11 6.28 22.12 0.14 0.25 16 22 Cl -0.03 -0.61 27.87 -2.72 -0.08 -0.68 16 23 C -0.09 -2.22 9.72 22.35 0.22 -2.00 16 24 C 0.15 4.63 6.59 40.23 0.27 4.90 16 25 N -0.53 -18.77 9.17 -185.65 -1.70 -20.47 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.74 6.51 -2.39 -0.02 1.72 16 28 H 0.08 3.62 6.07 -2.38 -0.01 3.60 16 29 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 30 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.08 2.45 6.16 -2.39 -0.01 2.44 16 32 H 0.08 2.46 7.24 -2.39 -0.02 2.44 16 33 H 0.18 6.75 5.95 -2.91 -0.02 6.73 16 34 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -50.87 324.34 3.38 -47.49 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.15 Total: 10.99 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.80 Total: 7.24 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -5.44 Total: -106.14 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.15 Total: -1.47 kcal Total: -50.87 3.38 -47.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302144114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.205 kcal (2) G-P(sol) polarization free energy of solvation -50.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds