Wall clock time and date at job start Tue Mar 31 2020 14:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00085 * 2 1 4 4 C 1.50701 * 109.46955 * 288.19836 * 3 2 1 5 5 H 1.07993 * 120.00097 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99790 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99918 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99491 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47681 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47098 * 120.00307 * 8 6 4 11 11 H 1.48506 * 109.46860 * 239.99876 * 8 6 4 12 12 C 1.46903 * 110.99617 * 123.95106 * 2 1 3 13 13 H 1.09004 * 109.43301 * 184.78754 * 12 2 1 14 14 C 1.53070 * 109.43446 * 304.69739 * 12 2 1 15 15 C 1.53416 * 108.29672 * 168.17290 * 14 12 2 16 16 O 1.42834 * 108.39588 * 295.23167 * 15 14 12 17 17 C 1.35940 * 117.79459 * 49.18376 * 16 15 14 18 18 C 1.39143 * 118.45533 * 162.95002 * 17 16 15 19 19 C 1.37960 * 120.23045 * 179.82969 * 18 17 16 20 20 C 1.38372 * 119.94171 * 359.97438 * 19 18 17 21 21 Br 1.89101 * 120.01763 * 180.09212 * 20 19 18 22 22 C 1.38181 * 119.96569 * 0.06379 * 20 19 18 23 23 C 1.38364 * 121.82850 * 342.89735 * 17 16 15 24 24 H 1.08998 * 109.47433 * 303.12883 * 1 2 3 25 25 H 1.09001 * 109.47165 * 63.12830 * 1 2 3 26 26 H 1.09004 * 109.47334 * 183.12394 * 1 2 3 27 27 H 1.09002 * 109.47117 * 48.19468 * 3 2 1 28 28 H 1.08994 * 109.47343 * 168.19321 * 3 2 1 29 29 H 0.97006 * 119.99669 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.69953 * 48.47471 * 14 12 2 31 31 H 1.08998 * 109.73083 * 287.89066 * 14 12 2 32 32 H 1.09000 * 109.68811 * 54.97210 * 15 14 12 33 33 H 1.09005 * 109.68259 * 175.49977 * 15 14 12 34 34 H 1.08005 * 119.88483 * 359.81455 * 18 17 16 35 35 H 1.07998 * 120.03178 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.84424 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7612 1.9993 -1.3498 5 1 1.2708 1.4359 -2.1297 6 6 2.1731 3.2933 -1.5889 7 7 2.7699 3.9795 -0.6390 8 14 1.8821 4.0718 -3.2618 9 1 1.1956 3.0983 -4.1483 10 1 1.0340 5.2807 -3.1044 11 1 3.1848 4.4559 -3.8624 12 6 1.9954 -0.7660 1.1377 13 1 3.0817 -0.6789 1.1620 14 6 1.4107 -0.2115 2.4391 15 6 1.7314 -1.1976 3.5698 16 8 1.0476 -2.4235 3.3062 17 6 1.1663 -2.9610 2.0632 18 6 0.8260 -4.2982 1.8838 19 6 0.9291 -4.8799 0.6371 20 6 1.3719 -4.1320 -0.4396 21 35 1.5116 -4.9266 -2.1499 22 6 1.7113 -2.8040 -0.2645 23 6 1.6116 -2.2161 0.9856 24 1 -0.3634 0.5616 0.8606 25 1 -0.3633 0.4645 -0.9167 26 1 -0.3634 -1.0262 0.0560 27 1 1.4861 1.9561 0.7661 28 1 3.0647 1.3501 0.2103 29 1 3.0593 4.8900 -0.8072 30 1 0.3305 -0.1045 2.3404 31 1 1.8574 0.7580 2.6595 32 1 2.8059 -1.3771 3.6067 33 1 1.3948 -0.7868 4.5217 34 1 0.4801 -4.8828 2.7235 35 1 0.6637 -5.9180 0.5014 36 1 2.0563 -2.2220 -1.1063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336581138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:11 Heat of formation + Delta-G solvation = -3.910178 kcal Electronic energy + Delta-G solvation = -19972.308661 eV Core-core repulsion = 16888.922569 eV Total energy + Delta-G solvation = -3083.386091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80544 -37.54805 -37.09326 -33.06766 -31.88221 -31.53755 -30.47674 -28.81250 -27.26409 -26.04156 -23.88116 -23.58911 -22.35642 -20.81938 -19.14730 -17.76292 -16.69916 -16.34337 -15.96029 -15.03810 -14.91940 -14.48392 -14.18389 -14.00591 -13.65296 -13.39675 -13.31232 -12.64700 -12.42337 -12.14075 -11.95991 -11.63191 -11.24711 -11.02681 -10.98350 -10.94880 -10.71590 -10.53886 -10.37733 -10.15722 -10.12253 -9.82508 -9.31485 -8.76740 -8.47596 -8.03078 -7.36759 -6.07699 -4.08738 1.21664 1.36389 1.78372 3.27983 3.28607 3.36477 3.41632 3.66929 4.37977 4.65996 4.73033 4.83035 4.94328 5.11817 5.17673 5.28399 5.30716 5.39105 5.54495 5.68038 5.73374 5.97978 6.01832 6.02672 6.09906 6.15095 6.35859 6.41473 6.52854 6.67412 6.71037 7.15015 7.22785 7.41230 7.74413 7.98455 8.09108 8.44975 8.99250 9.55978 11.03030 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.004731 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.285804 B = 5917.060478 C = 7919.672112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.525 5.525 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.125 3.875 13 H 0.091 0.909 14 C -0.195 4.195 15 C 0.065 3.935 16 O -0.317 6.317 17 C 0.147 3.853 18 C -0.154 4.154 19 C -0.063 4.063 20 C -0.130 4.130 21 Br -0.061 7.061 22 C -0.023 4.023 23 C -0.138 4.138 24 H 0.018 0.982 25 H 0.073 0.927 26 H 0.046 0.954 27 H -0.004 1.004 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 -17.605 4.952 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.248 5.248 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.016 3.984 13 H 0.109 0.891 14 C -0.235 4.235 15 C -0.010 4.010 16 O -0.231 6.231 17 C 0.100 3.900 18 C -0.174 4.174 19 C -0.083 4.083 20 C -0.209 4.209 21 Br 0.024 6.976 22 C -0.043 4.043 23 C -0.140 4.140 24 H 0.036 0.964 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.013 0.987 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.533 -17.995 4.048 18.617 hybrid contribution -0.292 1.397 0.193 1.440 sum -2.825 -16.598 4.241 17.362 Atomic orbital electron populations 1.22250 0.88767 0.99302 1.01005 1.62361 1.07173 1.18089 1.37146 1.19775 0.95082 0.81141 0.97198 1.21175 1.38002 0.97456 0.97726 0.91764 1.24974 0.95295 0.97172 0.97128 1.69957 1.40519 1.10794 1.32657 0.86451 0.77899 0.79124 0.84028 1.19610 1.21141 1.21000 1.20544 0.99754 0.88537 0.89612 0.89093 1.22998 1.03664 1.00392 0.96397 1.22992 0.96614 0.82242 0.99171 1.85980 1.69278 1.39668 1.28154 1.18876 0.95171 0.91856 0.84057 1.20453 1.06769 0.92322 0.97849 1.20778 0.97269 0.99496 0.90772 1.21607 1.11239 0.96463 0.91626 1.96653 1.97639 1.81934 1.21358 1.21058 0.93868 0.91682 0.97654 1.19941 1.04879 0.96552 0.92641 0.96404 0.90872 0.93564 0.98651 0.95321 0.92974 0.89919 0.89150 0.91676 0.87668 0.84811 0.84927 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 8.44 60.07 0.51 1.18 16 2 N -0.53 -10.65 3.90 -237.64 -0.93 -11.58 16 3 C 0.19 4.73 4.17 -4.98 -0.02 4.71 16 4 C -0.50 -13.74 8.64 -34.44 -0.30 -14.04 16 5 H 0.06 1.75 7.49 -52.49 -0.39 1.36 16 6 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.12 2.13 2.33 -68.79 -0.16 1.97 16 13 H 0.09 1.58 7.89 -51.93 -0.41 1.17 16 14 C -0.20 -2.95 4.82 -26.48 -0.13 -3.08 16 15 C 0.07 0.80 7.02 37.37 0.26 1.07 16 16 O -0.32 -4.42 10.28 -19.55 -0.20 -4.62 16 17 C 0.15 2.12 6.47 -39.20 -0.25 1.86 16 18 C -0.15 -1.93 9.93 -39.35 -0.39 -2.32 16 19 C -0.06 -0.77 9.78 -39.63 -0.39 -1.15 16 20 C -0.13 -1.80 6.22 -39.55 -0.25 -2.04 16 21 Br -0.06 -0.78 33.70 -68.01 -2.29 -3.07 16 22 C -0.02 -0.35 8.66 -39.50 -0.34 -0.70 16 23 C -0.14 -2.16 4.29 -104.44 -0.45 -2.61 16 24 H 0.02 0.33 6.32 -51.93 -0.33 0.00 16 25 H 0.07 1.48 7.35 -51.93 -0.38 1.10 16 26 H 0.05 0.81 6.82 -51.93 -0.35 0.46 16 27 H 0.00 -0.11 7.49 -51.93 -0.39 -0.50 16 28 H 0.03 0.75 7.83 -51.93 -0.41 0.34 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.08 1.32 5.89 -51.93 -0.31 1.01 16 31 H 0.09 1.42 7.63 -51.93 -0.40 1.02 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.15 2.54 7.70 -52.48 -0.40 2.13 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -28.59 311.39 -9.61 -38.20 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.59 Total: -0.94 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.00 Total: -13.71 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.19 Total: -36.88 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.20 Total: -4.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.29 Total: -3.07 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.59 -9.61 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336581138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.288 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds