Wall clock time and date at job start Tue Mar 31 2020 13:53:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53002 * 109.47378 * 2 1
4 4 C 1.50709 * 109.47060 * 240.00184 * 2 1 3
5 5 O 1.21275 * 119.99769 * 239.99874 * 4 2 1
6 6 N 1.34770 * 119.99851 * 60.00124 * 4 2 1
7 7 C 1.46498 * 119.99949 * 180.02562 * 6 4 2
8 8 C 1.50702 * 109.47244 * 179.97438 * 7 6 4
9 9 H 1.08004 * 119.99896 * 0.02562 * 8 7 6
10 10 C 1.37874 * 120.00355 * 179.97438 * 8 7 6
11 11 N 1.31519 * 119.99616 * 0.02562 * 10 8 7
12 12 Si 1.86794 * 120.00570 * 180.02562 * 10 8 7
13 13 H 1.48500 * 109.47095 * 89.99847 * 12 10 8
14 14 H 1.48504 * 109.47676 * 210.00304 * 12 10 8
15 15 H 1.48500 * 109.46890 * 330.00479 * 12 10 8
16 16 C 1.50702 * 109.47137 * 120.00184 * 2 1 3
17 17 C 1.38241 * 120.00577 * 241.60556 * 16 2 1
18 18 C 1.38214 * 120.00895 * 179.74343 * 17 16 2
19 19 C 1.38269 * 120.02055 * 0.27914 * 18 17 16
20 20 C 1.38199 * 120.00960 * 0.02562 * 19 18 17
21 21 C 1.38311 * 120.00228 * 61.88472 * 16 2 1
22 22 Br 1.89097 * 120.01155 * 359.97438 * 21 16 2
23 23 H 1.09000 * 109.47206 * 305.56247 * 1 2 3
24 24 H 1.09003 * 109.47281 * 65.55821 * 1 2 3
25 25 H 1.09005 * 109.47306 * 185.55911 * 1 2 3
26 26 H 1.08997 * 109.47404 * 179.97438 * 3 2 1
27 27 H 1.08996 * 109.47231 * 300.00608 * 3 2 1
28 28 H 1.09002 * 109.46743 * 59.99981 * 3 2 1
29 29 H 0.97000 * 120.00227 * 0.02562 * 6 4 2
30 30 H 1.08997 * 109.46929 * 299.99888 * 7 6 4
31 31 H 1.08998 * 109.47413 * 59.99903 * 7 6 4
32 32 H 0.97007 * 119.99808 * 179.97438 * 11 10 8
33 33 H 1.08001 * 119.99121 * 0.02562 * 17 16 2
34 34 H 1.07997 * 119.99445 * 180.25230 * 18 17 16
35 35 H 1.07999 * 119.99720 * 179.97438 * 19 18 17
36 36 H 1.07998 * 120.00410 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0323 -0.7104 -1.2306
5 8 2.7295 -1.6964 -1.1193
6 7 1.7067 -0.2499 -2.4546
7 6 2.1945 -0.9408 -3.6508
8 6 1.6918 -0.2306 -4.8812
9 1 1.0713 0.6478 -4.7821
10 6 2.0248 -0.7016 -6.1335
11 7 2.7808 -1.7710 -6.2542
12 14 1.4023 0.1791 -7.6587
13 1 2.3805 1.2207 -8.0628
14 1 1.2371 -0.8000 -8.7630
15 1 0.0942 0.8168 -7.3628
16 6 2.0323 -0.7105 1.2305
17 6 2.7994 -0.0295 2.1571
18 6 3.2557 -0.6796 3.2883
19 6 2.9500 -2.0128 3.4907
20 6 2.1884 -2.6960 2.5617
21 6 1.7306 -2.0455 1.4298
22 35 0.6873 -2.9794 0.1590
23 1 -0.3633 0.5977 0.8360
24 1 -0.3634 0.4252 -0.9356
25 1 -0.3634 -1.0229 0.0996
26 1 3.1300 1.4425 0.0005
27 1 1.6766 1.9564 -0.8899
28 1 1.6766 1.9563 0.8900
29 1 1.1493 0.5390 -2.5436
30 1 3.2845 -0.9412 -3.6509
31 1 1.8308 -1.9683 -3.6507
32 1 3.0148 -2.1026 -7.1353
33 1 3.0384 1.0119 1.9994
34 1 3.8516 -0.1462 4.0141
35 1 3.3071 -2.5205 4.3745
36 1 1.9493 -3.7372 2.7201
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000337166762.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:53:27
Heat of formation + Delta-G solvation = -6.649930 kcal
Electronic energy + Delta-G solvation = -19888.081259 eV
Core-core repulsion = 16804.576363 eV
Total energy + Delta-G solvation = -3083.504896 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.33561 -38.28477 -35.02486 -34.14360 -32.36520 -32.12213 -29.96976 -28.92423
-27.35598 -27.12089 -24.00316 -22.81572 -22.01692 -21.00820 -19.01399 -17.34333
-16.60369 -15.79837 -15.34520 -15.18591 -14.76526 -14.39899 -14.17074 -13.90390
-13.47972 -13.36679 -13.00246 -12.49123 -12.15043 -12.05437 -11.86888 -11.80522
-11.66953 -11.46945 -11.06780 -10.96308 -10.89435 -10.79086 -10.29563 -10.18161
-9.40784 -9.33575 -8.96928 -8.71255 -8.68503 -8.40746 -7.71921 -6.13431
-4.19932 1.18890 1.30855 1.95376 3.25494 3.31701 3.34006 3.47947
3.62302 4.18312 4.40951 4.51332 4.79708 4.91702 5.08185 5.12969
5.22666 5.25941 5.42699 5.45559 5.63745 5.71401 5.80583 5.82736
5.94578 5.95089 6.12309 6.27102 6.31896 6.41093 6.48007 6.83059
7.37469 7.52954 7.58869 7.71246 8.01741 8.70502 8.83297 9.19168
9.46920 10.96704
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.022004 B = 0.004395 C = 0.004040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1272.170489 B = 6368.765512 C = 6929.187061
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.053 4.053
3 C -0.140 4.140
4 C 0.510 3.490
5 O -0.536 6.536
6 N -0.708 5.708
7 C 0.253 3.747
8 C -0.541 4.541
9 H 0.062 0.938
10 C 0.064 3.936
11 N -0.885 5.885
12 Si 0.902 3.098
13 H -0.279 1.279
14 H -0.285 1.285
15 H -0.273 1.273
16 C -0.026 4.026
17 C -0.114 4.114
18 C -0.112 4.112
19 C -0.121 4.121
20 C -0.096 4.096
21 C -0.059 4.059
22 Br -0.028 7.028
23 H 0.061 0.939
24 H 0.068 0.932
25 H 0.079 0.921
26 H 0.064 0.936
27 H 0.068 0.932
28 H 0.066 0.934
29 H 0.388 0.612
30 H 0.025 0.975
31 H 0.026 0.974
32 H 0.265 0.735
33 H 0.133 0.867
34 H 0.125 0.875
35 H 0.126 0.874
36 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.161 2.917 19.723 20.367
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.056 4.056
3 C -0.197 4.197
4 C 0.293 3.707
5 O -0.414 6.414
6 N -0.357 5.357
7 C 0.133 3.867
8 C -0.580 4.580
9 H 0.080 0.920
10 C -0.140 4.140
11 N -0.523 5.523
12 Si 0.729 3.271
13 H -0.205 1.205
14 H -0.210 1.210
15 H -0.198 1.198
16 C -0.029 4.029
17 C -0.133 4.133
18 C -0.130 4.130
19 C -0.140 4.140
20 C -0.116 4.116
21 C -0.139 4.139
22 Br 0.059 6.941
23 H 0.080 0.920
24 H 0.087 0.913
25 H 0.098 0.902
26 H 0.083 0.917
27 H 0.087 0.913
28 H 0.085 0.915
29 H 0.220 0.780
30 H 0.043 0.957
31 H 0.044 0.956
32 H 0.075 0.925
33 H 0.151 0.849
34 H 0.143 0.857
35 H 0.144 0.856
36 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -3.961 1.692 19.127 19.606
hybrid contribution -0.205 0.967 -0.716 1.220
sum -4.166 2.658 18.411 19.063
Atomic orbital electron populations
1.22248 0.91730 1.04750 1.02694 1.19845 0.97583 0.96242 0.91958
1.21919 1.01780 0.93266 1.02775 1.19871 0.81593 0.84844 0.84390
1.90703 1.38362 1.25790 1.86522 1.46327 1.51986 1.31135 1.06221
1.19050 0.95118 0.92831 0.79716 1.21233 1.33038 1.13046 0.90636
0.92005 1.24938 0.94901 0.94971 0.99162 1.69985 1.35807 1.22436
1.24070 0.86448 0.79171 0.79282 0.82205 1.20501 1.21048 1.19760
1.19314 0.96409 0.92190 0.94963 1.21144 0.97624 1.00552 0.93949
1.21175 0.99525 0.94853 0.97479 1.21086 0.98872 0.94777 0.99281
1.21061 0.97697 0.99972 0.92909 1.21689 1.02211 0.94693 0.95281
1.96659 1.66287 1.74084 1.57089 0.91976 0.91255 0.90245 0.91739
0.91253 0.91524 0.77964 0.95736 0.95587 0.92527 0.84895 0.85701
0.85571 0.85309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.09 8.20 37.15 0.30 -1.79 16
2 C -0.05 -0.80 0.60 -156.81 -0.09 -0.89 16
3 C -0.14 -1.71 7.03 37.16 0.26 -1.45 16
4 C 0.51 10.23 5.15 -10.98 -0.06 10.18 16
5 O -0.54 -12.74 13.38 5.56 0.07 -12.67 16
6 N -0.71 -15.01 5.30 -61.47 -0.33 -15.33 16
7 C 0.25 6.75 5.43 -5.19 -0.03 6.73 16
8 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16
9 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16
10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16
11 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16
12 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16
13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16
15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
16 C -0.03 -0.40 4.40 -104.59 -0.46 -0.86 16
17 C -0.11 -1.42 8.98 -39.59 -0.36 -1.77 16
18 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16
19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16
20 C -0.10 -1.27 9.79 -39.56 -0.39 -1.66 16
21 C -0.06 -0.92 5.37 -39.52 -0.21 -1.13 16
22 Br -0.03 -0.48 26.67 -68.01 -1.81 -2.29 16
23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
24 H 0.07 0.89 7.41 -51.93 -0.38 0.51 16
25 H 0.08 1.15 4.66 -51.93 -0.24 0.91 16
26 H 0.06 0.82 7.59 -51.93 -0.39 0.42 16
27 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16
28 H 0.07 0.63 7.44 -51.93 -0.39 0.25 16
29 H 0.39 7.16 7.09 -40.82 -0.29 6.87 16
30 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16
31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
33 H 0.13 1.36 5.90 -52.49 -0.31 1.05 16
34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16
35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16
36 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16
LS Contribution 311.42 15.07 4.69 4.69
Total: -1.00 -32.37 311.42 -8.37 -40.74
By element:
Atomic # 1 Polarization: 8.30 SS G_CDS: -4.47 Total: 3.83 kcal
Atomic # 6 Polarization: -7.12 SS G_CDS: -2.24 Total: -9.36 kcal
Atomic # 7 Polarization: -41.30 SS G_CDS: 0.41 Total: -40.89 kcal
Atomic # 8 Polarization: -12.74 SS G_CDS: 0.07 Total: -12.67 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Atomic # 35 Polarization: -0.48 SS G_CDS: -1.81 Total: -2.29 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -32.37 -8.37 -40.74 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000337166762.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.090 kcal
(2) G-P(sol) polarization free energy of solvation -32.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.717 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds