Wall clock time and date at job start Tue Mar 31 2020 13:53:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53002 * 109.47378 * 2 1
4 4 C 1.50709 * 109.47060 * 240.00184 * 2 1 3
5 5 O 1.21275 * 119.99769 * 239.99874 * 4 2 1
6 6 N 1.34770 * 119.99851 * 60.00124 * 4 2 1
7 7 C 1.46498 * 119.99949 * 180.02562 * 6 4 2
8 8 C 1.50702 * 109.47244 * 179.97438 * 7 6 4
9 9 H 1.08004 * 119.99896 * 0.02562 * 8 7 6
10 10 C 1.37874 * 120.00355 * 179.97438 * 8 7 6
11 11 N 1.31519 * 119.99616 * 0.02562 * 10 8 7
12 12 Si 1.86794 * 120.00570 * 180.02562 * 10 8 7
13 13 H 1.48500 * 109.47095 * 89.99847 * 12 10 8
14 14 H 1.48504 * 109.47676 * 210.00304 * 12 10 8
15 15 H 1.48500 * 109.46890 * 330.00479 * 12 10 8
16 16 C 1.50702 * 109.47137 * 120.00184 * 2 1 3
17 17 C 1.38241 * 120.00577 * 241.60556 * 16 2 1
18 18 C 1.38214 * 120.00895 * 179.74343 * 17 16 2
19 19 C 1.38269 * 120.02055 * 0.27914 * 18 17 16
20 20 C 1.38199 * 120.00960 * 0.02562 * 19 18 17
21 21 C 1.38311 * 120.00228 * 61.88472 * 16 2 1
22 22 Br 1.89097 * 120.01155 * 359.97438 * 21 16 2
23 23 H 1.09000 * 109.47206 * 305.56247 * 1 2 3
24 24 H 1.09003 * 109.47281 * 65.55821 * 1 2 3
25 25 H 1.09005 * 109.47306 * 185.55911 * 1 2 3
26 26 H 1.08997 * 109.47404 * 179.97438 * 3 2 1
27 27 H 1.08996 * 109.47231 * 300.00608 * 3 2 1
28 28 H 1.09002 * 109.46743 * 59.99981 * 3 2 1
29 29 H 0.97000 * 120.00227 * 0.02562 * 6 4 2
30 30 H 1.08997 * 109.46929 * 299.99888 * 7 6 4
31 31 H 1.08998 * 109.47413 * 59.99903 * 7 6 4
32 32 H 0.97007 * 119.99808 * 179.97438 * 11 10 8
33 33 H 1.08001 * 119.99121 * 0.02562 * 17 16 2
34 34 H 1.07997 * 119.99445 * 180.25230 * 18 17 16
35 35 H 1.07999 * 119.99720 * 179.97438 * 19 18 17
36 36 H 1.07998 * 120.00410 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0323 -0.7104 -1.2306
5 8 2.7295 -1.6964 -1.1193
6 7 1.7067 -0.2499 -2.4546
7 6 2.1945 -0.9408 -3.6508
8 6 1.6918 -0.2306 -4.8812
9 1 1.0713 0.6478 -4.7821
10 6 2.0248 -0.7016 -6.1335
11 7 2.7808 -1.7710 -6.2542
12 14 1.4023 0.1791 -7.6587
13 1 2.3805 1.2207 -8.0628
14 1 1.2371 -0.8000 -8.7630
15 1 0.0942 0.8168 -7.3628
16 6 2.0323 -0.7105 1.2305
17 6 2.7994 -0.0295 2.1571
18 6 3.2557 -0.6796 3.2883
19 6 2.9500 -2.0128 3.4907
20 6 2.1884 -2.6960 2.5617
21 6 1.7306 -2.0455 1.4298
22 35 0.6873 -2.9794 0.1590
23 1 -0.3633 0.5977 0.8360
24 1 -0.3634 0.4252 -0.9356
25 1 -0.3634 -1.0229 0.0996
26 1 3.1300 1.4425 0.0005
27 1 1.6766 1.9564 -0.8899
28 1 1.6766 1.9563 0.8900
29 1 1.1493 0.5390 -2.5436
30 1 3.2845 -0.9412 -3.6509
31 1 1.8308 -1.9683 -3.6507
32 1 3.0148 -2.1026 -7.1353
33 1 3.0384 1.0119 1.9994
34 1 3.8516 -0.1462 4.0141
35 1 3.3071 -2.5205 4.3745
36 1 1.9493 -3.7372 2.7201
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000337166762.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:53:26
Heat of formation + Delta-G solvation = -27.334739 kcal
Electronic energy + Delta-G solvation = -19888.978220 eV
Core-core repulsion = 16804.576363 eV
Total energy + Delta-G solvation = -3084.401857 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.58600 -39.60320 -36.26468 -36.07901 -34.25377 -33.28175 -31.03598 -30.00313
-29.10732 -28.34762 -25.44861 -24.43458 -22.98309 -22.45343 -20.57348 -18.83823
-17.90015 -17.43617 -16.93379 -16.48590 -16.23997 -15.84075 -15.49790 -15.04187
-14.84137 -14.45726 -14.21366 -14.09590 -14.02439 -13.26361 -13.16503 -13.05782
-12.89934 -12.74191 -12.68999 -12.55804 -12.21412 -12.02356 -11.84256 -11.46942
-11.39235 -10.77935 -10.62815 -10.41512 -9.80074 -9.72587 -9.41899 -8.27830
-6.44102 0.20326 0.35084 0.84262 1.42397 1.44866 1.55977 1.90983
2.32832 2.54075 2.86058 3.06999 3.44708 3.76574 3.99574 4.04988
4.10787 4.22005 4.42634 4.52640 4.70591 4.74636 4.80330 4.84438
4.89585 5.03008 5.15206 5.19131 5.27870 5.29137 5.36014 5.48218
5.50896 5.53144 5.75265 5.88402 5.94708 6.67585 6.99302 7.25450
7.58567 8.84284
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.022004 B = 0.004395 C = 0.004040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1272.170489 B = 6368.765512 C = 6929.187061
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.043 4.043
3 C -0.138 4.138
4 C 0.506 3.494
5 O -0.577 6.577
6 N -0.705 5.705
7 C 0.275 3.725
8 C -0.553 4.553
9 H 0.082 0.918
10 C 0.004 3.996
11 N -0.932 5.932
12 Si 0.983 3.017
13 H -0.270 1.270
14 H -0.285 1.285
15 H -0.255 1.255
16 C -0.053 4.053
17 C -0.117 4.117
18 C -0.106 4.106
19 C -0.115 4.115
20 C -0.111 4.111
21 C -0.085 4.085
22 Br -0.061 7.061
23 H 0.092 0.908
24 H 0.071 0.929
25 H 0.064 0.936
26 H 0.057 0.943
27 H 0.073 0.927
28 H 0.103 0.897
29 H 0.403 0.597
30 H -0.017 1.017
31 H -0.017 1.017
32 H 0.267 0.733
33 H 0.157 0.843
34 H 0.163 0.837
35 H 0.160 0.840
36 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.564 5.653 21.415 22.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.046 4.046
3 C -0.196 4.196
4 C 0.293 3.707
5 O -0.457 6.457
6 N -0.355 5.355
7 C 0.152 3.848
8 C -0.591 4.591
9 H 0.100 0.900
10 C -0.195 4.195
11 N -0.570 5.570
12 Si 0.806 3.194
13 H -0.195 1.195
14 H -0.211 1.211
15 H -0.179 1.179
16 C -0.055 4.055
17 C -0.135 4.135
18 C -0.124 4.124
19 C -0.134 4.134
20 C -0.131 4.131
21 C -0.164 4.164
22 Br 0.025 6.975
23 H 0.111 0.889
24 H 0.090 0.910
25 H 0.083 0.917
26 H 0.077 0.923
27 H 0.092 0.908
28 H 0.122 0.878
29 H 0.238 0.762
30 H 0.001 0.999
31 H 0.001 0.999
32 H 0.076 0.924
33 H 0.175 0.825
34 H 0.181 0.819
35 H 0.178 0.822
36 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -4.388 4.464 20.860 21.779
hybrid contribution 0.002 0.059 -1.092 1.093
sum -4.386 4.523 19.768 20.748
Atomic orbital electron populations
1.22265 0.90494 1.04520 1.04087 1.19798 0.98501 0.97245 0.89053
1.21977 1.01443 0.91296 1.04841 1.20877 0.80272 0.84259 0.85321
1.90675 1.40080 1.27721 1.87229 1.46063 1.52513 1.31507 1.05413
1.18420 0.92507 0.91452 0.82439 1.21617 1.33112 1.13551 0.90820
0.89973 1.26044 0.94781 0.95592 1.03093 1.70154 1.37361 1.24424
1.25093 0.85191 0.79249 0.77894 0.77102 1.19509 1.21076 1.17908
1.19476 0.98075 0.92266 0.95707 1.21494 0.96533 1.01729 0.93760
1.21660 0.98552 0.94789 0.97352 1.21523 0.97274 0.95121 0.99477
1.21316 0.98265 1.00673 0.92870 1.21871 1.03534 0.95341 0.95675
1.96611 1.67325 1.74930 1.58614 0.88922 0.91046 0.91739 0.92343
0.90841 0.87846 0.76171 0.99863 0.99903 0.92374 0.82518 0.81926
0.82243 0.84638
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.98 8.20 71.98 0.59 -3.39 16
2 C -0.04 -1.25 0.60 -53.67 -0.03 -1.28 16
3 C -0.14 -3.02 7.03 71.98 0.51 -2.51 16
4 C 0.51 20.88 5.15 87.66 0.45 21.33 16
5 O -0.58 -28.82 13.38 -3.01 -0.04 -28.86 16
6 N -0.71 -30.74 5.30 -466.80 -2.47 -33.22 16
7 C 0.27 15.43 5.43 85.63 0.46 15.89 16
8 C -0.55 -30.57 9.28 25.60 0.24 -30.33 16
9 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16
10 C 0.00 0.24 5.46 84.65 0.46 0.70 16
11 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16
12 Si 0.98 42.88 29.54 68.60 2.03 44.91 16
13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
14 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16
15 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16
16 C -0.05 -1.52 4.40 -19.85 -0.09 -1.61 16
17 C -0.12 -2.54 8.98 22.26 0.20 -2.34 16
18 C -0.11 -1.87 10.05 22.27 0.22 -1.64 16
19 C -0.12 -2.20 10.05 22.27 0.22 -1.97 16
20 C -0.11 -2.83 9.79 22.29 0.22 -2.62 16
21 C -0.08 -2.65 5.37 22.31 0.12 -2.53 16
22 Br -0.06 -2.18 26.67 -20.37 -0.54 -2.72 16
23 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
24 H 0.07 1.75 7.41 -2.39 -0.02 1.73 16
25 H 0.06 1.87 4.66 -2.38 -0.01 1.86 16
26 H 0.06 1.35 7.59 -2.39 -0.02 1.33 16
27 H 0.07 1.54 7.56 -2.39 -0.02 1.52 16
28 H 0.10 1.51 7.44 -2.39 -0.02 1.49 16
29 H 0.40 14.84 7.09 -92.71 -0.66 14.18 16
30 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16
31 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16
32 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16
33 H 0.16 2.55 5.90 -2.91 -0.02 2.53 16
34 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16
35 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16
36 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16
Total: -1.00 -74.83 311.42 3.27 -71.56
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: 0.44 Total: 17.54 kcal
Atomic # 6 Polarization: -15.88 SS G_CDS: 3.58 Total: -12.30 kcal
Atomic # 7 Polarization: -87.93 SS G_CDS: -2.19 Total: -90.12 kcal
Atomic # 8 Polarization: -28.82 SS G_CDS: -0.04 Total: -28.86 kcal
Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal
Atomic # 35 Polarization: -2.18 SS G_CDS: -0.54 Total: -2.72 kcal
Total: -74.83 3.27 -71.56 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000337166762.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.221 kcal
(2) G-P(sol) polarization free energy of solvation -74.829 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds