Wall clock time and date at job start Tue Mar 31 2020 14:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99949 * 2 1 4 4 H 1.07999 * 119.99890 * 202.34509 * 3 2 1 5 5 C 1.38814 * 119.99915 * 22.34676 * 3 2 1 6 6 N 1.31611 * 120.00311 * 11.34487 * 5 3 2 7 7 Si 1.86804 * 119.99856 * 191.34656 * 5 3 2 8 8 H 1.48503 * 109.47186 * 60.00142 * 7 5 3 9 9 H 1.48499 * 109.47061 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47092 * 299.99991 * 7 5 3 11 11 C 1.46498 * 120.00395 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47431 * 270.00081 * 11 2 1 13 13 C 1.53000 * 109.47180 * 179.97438 * 12 11 2 14 14 C 1.50706 * 109.46996 * 179.97438 * 13 12 11 15 15 O 1.21259 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.47104 * 119.99894 * 180.02562 * 14 13 12 17 17 C 1.39889 * 120.16173 * 359.72946 * 16 14 13 18 18 C 1.37835 * 119.83334 * 179.74296 * 17 16 14 19 19 C 1.38526 * 120.16319 * 0.50362 * 18 17 16 20 20 Br 1.89098 * 119.83593 * 179.74179 * 19 18 17 21 21 C 1.38527 * 120.32556 * 359.76879 * 19 18 17 22 22 C 1.37833 * 120.16644 * 359.97418 * 21 19 18 23 23 H 1.09004 * 109.46455 * 274.21145 * 1 2 3 24 24 H 1.08995 * 109.47159 * 34.21001 * 1 2 3 25 25 H 1.08999 * 109.46939 * 154.21444 * 1 2 3 26 26 H 0.96992 * 120.00498 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.47599 * 149.99453 * 11 2 1 28 28 H 1.09000 * 109.46948 * 29.99851 * 11 2 1 29 29 H 1.09002 * 109.47246 * 59.99708 * 12 11 2 30 30 H 1.09000 * 109.46867 * 299.99820 * 12 11 2 31 31 H 1.08999 * 109.47052 * 60.00467 * 13 12 11 32 32 H 1.08992 * 109.47241 * 300.00013 * 13 12 11 33 33 H 1.08000 * 120.07889 * 359.97438 * 17 16 14 34 34 H 1.08001 * 119.91949 * 180.25236 * 18 17 16 35 35 H 1.08005 * 119.91949 * 179.97438 * 21 19 18 36 36 H 1.07999 * 120.08967 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3430 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3366 4.0048 0.1687 8 1 2.4914 4.2333 -1.2905 9 1 1.4850 5.0735 0.7499 10 1 3.6720 4.0288 0.8179 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 6 3.2172 -3.0350 1.4437 14 6 3.4689 -3.4691 2.8648 15 8 3.0752 -2.7862 3.7862 16 6 4.1922 -4.7214 3.1341 17 6 4.6429 -5.5148 2.0737 18 6 5.3246 -6.6842 2.3338 19 6 5.5547 -7.0797 3.6413 20 35 6.4845 -8.6895 3.9875 21 6 5.1064 -6.3021 4.6964 22 6 4.4279 -5.1275 4.4519 23 1 -0.3632 0.0755 1.0250 24 1 -0.3633 0.8498 -0.5778 25 1 -0.3633 -0.9253 -0.4470 26 1 -0.0460 3.0775 1.4133 27 1 3.1500 -1.1386 -0.5134 28 1 1.6085 -2.0286 -0.5129 29 1 1.5002 -1.8399 1.9572 30 1 3.0417 -0.9498 1.9567 31 1 4.1696 -2.9052 0.9298 32 1 2.6278 -3.7947 0.9304 33 1 4.4605 -5.2098 1.0539 34 1 5.6768 -7.2957 1.5162 35 1 5.2889 -6.6170 5.7133 36 1 4.0785 -4.5225 5.2754 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347734793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:02 Heat of formation + Delta-G solvation = 6.302333 kcal Electronic energy + Delta-G solvation = -18555.161455 eV Core-core repulsion = 15472.218211 eV Total energy + Delta-G solvation = -3082.943244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.22935 -38.44195 -35.87359 -33.25603 -32.70868 -31.55129 -30.69146 -29.83268 -26.76911 -25.74236 -23.89196 -23.14300 -21.94493 -20.19566 -19.59766 -17.41239 -16.67677 -15.93990 -15.80597 -15.39558 -14.87207 -14.63174 -14.16494 -13.96892 -13.89135 -13.41571 -13.25396 -12.74566 -12.46084 -12.13806 -11.68226 -11.39451 -11.27263 -11.19645 -10.90872 -10.76590 -10.71049 -10.61166 -10.40998 -10.04942 -9.88589 -9.69950 -9.55789 -9.47688 -9.10249 -8.48355 -6.68972 -5.65690 -3.11243 0.20369 0.90849 1.15674 2.22448 3.37795 3.42788 3.47578 3.48655 3.91536 4.32831 4.46868 4.55790 4.86631 4.88538 5.13588 5.20419 5.32414 5.43057 5.52024 5.53944 5.70511 5.74887 5.78289 5.95300 6.13850 6.22361 6.32339 6.45817 6.50353 6.81446 6.93879 7.20382 7.44790 7.57586 7.80067 7.86878 8.47290 9.30897 9.94605 10.43464 11.39750 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.038086 B = 0.002057 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.004882 B =13609.374085 C =13702.395564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.604 5.604 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.153 3.847 12 C -0.130 4.130 13 C -0.163 4.163 14 C 0.389 3.611 15 O -0.437 6.437 16 C -0.146 4.146 17 C -0.067 4.067 18 C -0.104 4.104 19 C -0.069 4.069 20 Br -0.049 7.049 21 C -0.104 4.104 22 C -0.060 4.060 23 H 0.027 0.973 24 H 0.044 0.956 25 H -0.005 1.005 26 H 0.252 0.748 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.040 -25.329 4.564 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.327 5.327 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.026 3.974 12 C -0.170 4.170 13 C -0.201 4.201 14 C 0.264 3.736 15 O -0.310 6.310 16 C -0.147 4.147 17 C -0.086 4.086 18 C -0.124 4.124 19 C -0.149 4.149 20 Br 0.037 6.963 21 C -0.124 4.124 22 C -0.079 4.079 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.014 0.986 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.042 -25.407 5.234 28.600 hybrid contribution 0.269 1.163 -0.025 1.194 sum 12.312 -24.245 5.209 27.686 Atomic orbital electron populations 1.20789 0.82580 0.95427 0.99248 1.43972 1.01950 1.00759 1.85975 1.19161 0.97899 0.85466 1.35770 0.91474 1.25040 0.97755 0.98533 0.98504 1.70052 1.17887 1.27099 1.40392 0.86333 0.78525 0.83863 0.77795 1.21117 1.21657 1.20988 1.20822 0.95589 0.88195 0.92809 1.22169 0.99809 0.93355 1.01710 1.22102 1.03015 1.01070 0.93908 1.22755 0.75429 0.83021 0.92346 1.90562 1.40518 1.52159 1.47788 1.20968 1.01658 0.97960 0.94138 1.21553 0.94633 0.92841 0.99615 1.21118 0.99031 0.97220 0.95050 1.22095 1.01992 0.94479 0.96290 1.96754 1.74629 1.28850 1.96110 1.21113 0.98165 0.94396 0.98696 1.21512 0.94668 0.94904 0.96864 0.95440 0.93743 0.98618 0.93749 0.93977 0.94635 0.92226 0.91363 0.88613 0.88774 0.83699 0.84339 0.84465 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.18 9.01 59.85 0.54 4.71 16 2 N -0.60 -15.59 2.93 -181.12 -0.53 -16.11 16 3 C -0.25 -7.11 9.67 -15.06 -0.15 -7.26 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.41 16 5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -27.28 10.58 55.49 0.59 -26.69 16 7 Si 0.90 22.31 29.57 -169.99 -5.03 17.29 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 C 0.15 3.10 5.71 -4.04 -0.02 3.07 16 12 C -0.13 -2.45 4.83 -26.73 -0.13 -2.58 16 13 C -0.16 -2.13 4.31 -27.88 -0.12 -2.25 16 14 C 0.39 5.43 7.11 -30.71 -0.22 5.21 16 15 O -0.44 -7.86 15.97 5.58 0.09 -7.77 16 16 C -0.15 -1.62 5.87 -105.06 -0.62 -2.24 16 17 C -0.07 -0.58 9.47 -39.11 -0.37 -0.95 16 18 C -0.10 -0.84 9.76 -39.62 -0.39 -1.23 16 19 C -0.07 -0.60 6.23 -39.37 -0.25 -0.85 16 20 Br -0.05 -0.38 33.69 -68.01 -2.29 -2.67 16 21 C -0.10 -0.93 9.76 -39.62 -0.39 -1.32 16 22 C -0.06 -0.64 9.60 -39.11 -0.38 -1.01 16 23 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 24 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 25 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 28 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 30 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 31 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 32 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.15 0.93 7.05 -52.49 -0.37 0.56 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -32.50 328.22 -9.63 -42.13 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.84 Total: -4.32 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.57 Total: -6.79 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.06 Total: -42.80 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.50 -9.63 -42.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347734793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.431 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds