Wall clock time and date at job start Tue Mar 31 2020 14:53:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36940 * 119.99949 * 2 1
4 4 H 1.07999 * 119.99890 * 202.34509 * 3 2 1
5 5 C 1.38814 * 119.99915 * 22.34676 * 3 2 1
6 6 N 1.31611 * 120.00311 * 11.34487 * 5 3 2
7 7 Si 1.86804 * 119.99856 * 191.34656 * 5 3 2
8 8 H 1.48503 * 109.47186 * 60.00142 * 7 5 3
9 9 H 1.48499 * 109.47061 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.47092 * 299.99991 * 7 5 3
11 11 C 1.46498 * 120.00395 * 179.97438 * 2 1 3
12 12 C 1.52998 * 109.47431 * 270.00081 * 11 2 1
13 13 C 1.53000 * 109.47180 * 179.97438 * 12 11 2
14 14 C 1.50706 * 109.46996 * 179.97438 * 13 12 11
15 15 O 1.21259 * 119.99868 * 0.02562 * 14 13 12
16 16 C 1.47104 * 119.99894 * 180.02562 * 14 13 12
17 17 C 1.39889 * 120.16173 * 359.72946 * 16 14 13
18 18 C 1.37835 * 119.83334 * 179.74296 * 17 16 14
19 19 C 1.38526 * 120.16319 * 0.50362 * 18 17 16
20 20 Br 1.89098 * 119.83593 * 179.74179 * 19 18 17
21 21 C 1.38527 * 120.32556 * 359.76879 * 19 18 17
22 22 C 1.37833 * 120.16644 * 359.97418 * 21 19 18
23 23 H 1.09004 * 109.46455 * 274.21145 * 1 2 3
24 24 H 1.08995 * 109.47159 * 34.21001 * 1 2 3
25 25 H 1.08999 * 109.46939 * 154.21444 * 1 2 3
26 26 H 0.96992 * 120.00498 * 179.97438 * 6 5 3
27 27 H 1.09001 * 109.47599 * 149.99453 * 11 2 1
28 28 H 1.09000 * 109.46948 * 29.99851 * 11 2 1
29 29 H 1.09002 * 109.47246 * 59.99708 * 12 11 2
30 30 H 1.09000 * 109.46867 * 299.99820 * 12 11 2
31 31 H 1.08999 * 109.47052 * 60.00467 * 13 12 11
32 32 H 1.08992 * 109.47241 * 300.00013 * 13 12 11
33 33 H 1.08000 * 120.07889 * 359.97438 * 17 16 14
34 34 H 1.08001 * 119.91949 * 180.25236 * 18 17 16
35 35 H 1.08005 * 119.91949 * 179.97438 * 21 19 18
36 36 H 1.07999 * 120.08967 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1689 1.2210 -0.3556
5 6 1.5338 2.3430 0.4571
6 7 0.3842 2.2691 1.0936
7 14 2.3366 4.0048 0.1687
8 1 2.4914 4.2333 -1.2905
9 1 1.4850 5.0735 0.7499
10 1 3.6720 4.0288 0.8179
11 6 2.1976 -1.2687 0.0006
12 6 2.4526 -1.7097 1.4432
13 6 3.2172 -3.0350 1.4437
14 6 3.4689 -3.4691 2.8648
15 8 3.0752 -2.7862 3.7862
16 6 4.1922 -4.7214 3.1341
17 6 4.6429 -5.5148 2.0737
18 6 5.3246 -6.6842 2.3338
19 6 5.5547 -7.0797 3.6413
20 35 6.4845 -8.6895 3.9875
21 6 5.1064 -6.3021 4.6964
22 6 4.4279 -5.1275 4.4519
23 1 -0.3632 0.0755 1.0250
24 1 -0.3633 0.8498 -0.5778
25 1 -0.3633 -0.9253 -0.4470
26 1 -0.0460 3.0775 1.4133
27 1 3.1500 -1.1386 -0.5134
28 1 1.6085 -2.0286 -0.5129
29 1 1.5002 -1.8399 1.9572
30 1 3.0417 -0.9498 1.9567
31 1 4.1696 -2.9052 0.9298
32 1 2.6278 -3.7947 0.9304
33 1 4.4605 -5.2098 1.0539
34 1 5.6768 -7.2957 1.5162
35 1 5.2889 -6.6170 5.7133
36 1 4.0785 -4.5225 5.2754
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000347734793.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:53:02
Heat of formation + Delta-G solvation = 6.302333 kcal
Electronic energy + Delta-G solvation = -18555.161455 eV
Core-core repulsion = 15472.218211 eV
Total energy + Delta-G solvation = -3082.943244 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-40.22935 -38.44195 -35.87359 -33.25603 -32.70868 -31.55129 -30.69146 -29.83268
-26.76911 -25.74236 -23.89196 -23.14300 -21.94493 -20.19566 -19.59766 -17.41239
-16.67677 -15.93990 -15.80597 -15.39558 -14.87207 -14.63174 -14.16494 -13.96892
-13.89135 -13.41571 -13.25396 -12.74566 -12.46084 -12.13806 -11.68226 -11.39451
-11.27263 -11.19645 -10.90872 -10.76590 -10.71049 -10.61166 -10.40998 -10.04942
-9.88589 -9.69950 -9.55789 -9.47688 -9.10249 -8.48355 -6.68972 -5.65690
-3.11243 0.20369 0.90849 1.15674 2.22448 3.37795 3.42788 3.47578
3.48655 3.91536 4.32831 4.46868 4.55790 4.86631 4.88538 5.13588
5.20419 5.32414 5.43057 5.52024 5.53944 5.70511 5.74887 5.78289
5.95300 6.13850 6.22361 6.32339 6.45817 6.50353 6.81446 6.93879
7.20382 7.44790 7.57586 7.80067 7.86878 8.47290 9.30897 9.94605
10.43464 11.39750
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.038086 B = 0.002057 C = 0.002043
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 735.004882 B =13609.374085 C =13702.395564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.164 3.836
2 N -0.604 5.604
3 C -0.253 4.253
4 H 0.067 0.933
5 C 0.000 4.000
6 N -0.909 5.909
7 Si 0.905 3.095
8 H -0.285 1.285
9 H -0.291 1.291
10 H -0.284 1.284
11 C 0.153 3.847
12 C -0.130 4.130
13 C -0.163 4.163
14 C 0.389 3.611
15 O -0.437 6.437
16 C -0.146 4.146
17 C -0.067 4.067
18 C -0.104 4.104
19 C -0.069 4.069
20 Br -0.049 7.049
21 C -0.104 4.104
22 C -0.060 4.060
23 H 0.027 0.973
24 H 0.044 0.956
25 H -0.005 1.005
26 H 0.252 0.748
27 H 0.042 0.958
28 H 0.035 0.965
29 H 0.059 0.941
30 H 0.068 0.932
31 H 0.096 0.904
32 H 0.094 0.906
33 H 0.145 0.855
34 H 0.139 0.861
35 H 0.137 0.863
36 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.040 -25.329 4.564 28.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.327 5.327
3 C -0.383 4.383
4 H 0.085 0.915
5 C -0.198 4.198
6 N -0.554 5.554
7 Si 0.735 3.265
8 H -0.211 1.211
9 H -0.217 1.217
10 H -0.210 1.210
11 C 0.026 3.974
12 C -0.170 4.170
13 C -0.201 4.201
14 C 0.264 3.736
15 O -0.310 6.310
16 C -0.147 4.147
17 C -0.086 4.086
18 C -0.124 4.124
19 C -0.149 4.149
20 Br 0.037 6.963
21 C -0.124 4.124
22 C -0.079 4.079
23 H 0.046 0.954
24 H 0.063 0.937
25 H 0.014 0.986
26 H 0.063 0.937
27 H 0.060 0.940
28 H 0.054 0.946
29 H 0.078 0.922
30 H 0.086 0.914
31 H 0.114 0.886
32 H 0.112 0.888
33 H 0.163 0.837
34 H 0.157 0.843
35 H 0.155 0.845
36 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 12.042 -25.407 5.234 28.600
hybrid contribution 0.269 1.163 -0.025 1.194
sum 12.312 -24.245 5.209 27.686
Atomic orbital electron populations
1.20789 0.82580 0.95427 0.99248 1.43972 1.01950 1.00759 1.85975
1.19161 0.97899 0.85466 1.35770 0.91474 1.25040 0.97755 0.98533
0.98504 1.70052 1.17887 1.27099 1.40392 0.86333 0.78525 0.83863
0.77795 1.21117 1.21657 1.20988 1.20822 0.95589 0.88195 0.92809
1.22169 0.99809 0.93355 1.01710 1.22102 1.03015 1.01070 0.93908
1.22755 0.75429 0.83021 0.92346 1.90562 1.40518 1.52159 1.47788
1.20968 1.01658 0.97960 0.94138 1.21553 0.94633 0.92841 0.99615
1.21118 0.99031 0.97220 0.95050 1.22095 1.01992 0.94479 0.96290
1.96754 1.74629 1.28850 1.96110 1.21113 0.98165 0.94396 0.98696
1.21512 0.94668 0.94904 0.96864 0.95440 0.93743 0.98618 0.93749
0.93977 0.94635 0.92226 0.91363 0.88613 0.88774 0.83699 0.84339
0.84465 0.83914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 50.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.18 9.01 59.85 0.54 4.71 16
2 N -0.60 -15.59 2.93 -181.12 -0.53 -16.11 16
3 C -0.25 -7.11 9.67 -15.06 -0.15 -7.26 16
4 H 0.07 1.83 7.84 -52.49 -0.41 1.41 16
5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16
6 N -0.91 -27.28 10.58 55.49 0.59 -26.69 16
7 Si 0.90 22.31 29.57 -169.99 -5.03 17.29 16
8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
11 C 0.15 3.10 5.71 -4.04 -0.02 3.07 16
12 C -0.13 -2.45 4.83 -26.73 -0.13 -2.58 16
13 C -0.16 -2.13 4.31 -27.88 -0.12 -2.25 16
14 C 0.39 5.43 7.11 -30.71 -0.22 5.21 16
15 O -0.44 -7.86 15.97 5.58 0.09 -7.77 16
16 C -0.15 -1.62 5.87 -105.06 -0.62 -2.24 16
17 C -0.07 -0.58 9.47 -39.11 -0.37 -0.95 16
18 C -0.10 -0.84 9.76 -39.62 -0.39 -1.23 16
19 C -0.07 -0.60 6.23 -39.37 -0.25 -0.85 16
20 Br -0.05 -0.38 33.69 -68.01 -2.29 -2.67 16
21 C -0.10 -0.93 9.76 -39.62 -0.39 -1.32 16
22 C -0.06 -0.64 9.60 -39.11 -0.38 -1.01 16
23 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16
24 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16
25 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16
26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
27 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16
28 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16
29 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16
30 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16
31 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16
32 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16
33 H 0.15 0.93 7.05 -52.49 -0.37 0.56 16
34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16
35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16
36 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16
LS Contribution 328.22 15.07 4.95 4.95
Total: -1.00 -32.50 328.22 -9.63 -42.13
By element:
Atomic # 1 Polarization: 0.51 SS G_CDS: -4.84 Total: -4.32 kcal
Atomic # 6 Polarization: -4.22 SS G_CDS: -2.57 Total: -6.79 kcal
Atomic # 7 Polarization: -42.86 SS G_CDS: 0.06 Total: -42.80 kcal
Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal
Atomic # 35 Polarization: -0.38 SS G_CDS: -2.29 Total: -2.67 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -32.50 -9.63 -42.13 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347734793.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.431 kcal
(2) G-P(sol) polarization free energy of solvation -32.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.931 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds