Wall clock time and date at job start Tue Mar 31 2020 14:53:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36940 * 119.99949 * 2 1
4 4 H 1.07999 * 119.99890 * 202.34509 * 3 2 1
5 5 C 1.38814 * 119.99915 * 22.34676 * 3 2 1
6 6 N 1.31611 * 120.00311 * 11.34487 * 5 3 2
7 7 Si 1.86804 * 119.99856 * 191.34656 * 5 3 2
8 8 H 1.48503 * 109.47186 * 60.00142 * 7 5 3
9 9 H 1.48499 * 109.47061 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.47092 * 299.99991 * 7 5 3
11 11 C 1.46498 * 120.00395 * 179.97438 * 2 1 3
12 12 C 1.52998 * 109.47431 * 270.00081 * 11 2 1
13 13 C 1.53000 * 109.47180 * 179.97438 * 12 11 2
14 14 C 1.50706 * 109.46996 * 179.97438 * 13 12 11
15 15 O 1.21259 * 119.99868 * 0.02562 * 14 13 12
16 16 C 1.47104 * 119.99894 * 180.02562 * 14 13 12
17 17 C 1.39889 * 120.16173 * 359.72946 * 16 14 13
18 18 C 1.37835 * 119.83334 * 179.74296 * 17 16 14
19 19 C 1.38526 * 120.16319 * 0.50362 * 18 17 16
20 20 Br 1.89098 * 119.83593 * 179.74179 * 19 18 17
21 21 C 1.38527 * 120.32556 * 359.76879 * 19 18 17
22 22 C 1.37833 * 120.16644 * 359.97418 * 21 19 18
23 23 H 1.09004 * 109.46455 * 274.21145 * 1 2 3
24 24 H 1.08995 * 109.47159 * 34.21001 * 1 2 3
25 25 H 1.08999 * 109.46939 * 154.21444 * 1 2 3
26 26 H 0.96992 * 120.00498 * 179.97438 * 6 5 3
27 27 H 1.09001 * 109.47599 * 149.99453 * 11 2 1
28 28 H 1.09000 * 109.46948 * 29.99851 * 11 2 1
29 29 H 1.09002 * 109.47246 * 59.99708 * 12 11 2
30 30 H 1.09000 * 109.46867 * 299.99820 * 12 11 2
31 31 H 1.08999 * 109.47052 * 60.00467 * 13 12 11
32 32 H 1.08992 * 109.47241 * 300.00013 * 13 12 11
33 33 H 1.08000 * 120.07889 * 359.97438 * 17 16 14
34 34 H 1.08001 * 119.91949 * 180.25236 * 18 17 16
35 35 H 1.08005 * 119.91949 * 179.97438 * 21 19 18
36 36 H 1.07999 * 120.08967 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1689 1.2210 -0.3556
5 6 1.5338 2.3430 0.4571
6 7 0.3842 2.2691 1.0936
7 14 2.3366 4.0048 0.1687
8 1 2.4914 4.2333 -1.2905
9 1 1.4850 5.0735 0.7499
10 1 3.6720 4.0288 0.8179
11 6 2.1976 -1.2687 0.0006
12 6 2.4526 -1.7097 1.4432
13 6 3.2172 -3.0350 1.4437
14 6 3.4689 -3.4691 2.8648
15 8 3.0752 -2.7862 3.7862
16 6 4.1922 -4.7214 3.1341
17 6 4.6429 -5.5148 2.0737
18 6 5.3246 -6.6842 2.3338
19 6 5.5547 -7.0797 3.6413
20 35 6.4845 -8.6895 3.9875
21 6 5.1064 -6.3021 4.6964
22 6 4.4279 -5.1275 4.4519
23 1 -0.3632 0.0755 1.0250
24 1 -0.3633 0.8498 -0.5778
25 1 -0.3633 -0.9253 -0.4470
26 1 -0.0460 3.0775 1.4133
27 1 3.1500 -1.1386 -0.5134
28 1 1.6085 -2.0286 -0.5129
29 1 1.5002 -1.8399 1.9572
30 1 3.0417 -0.9498 1.9567
31 1 4.1696 -2.9052 0.9298
32 1 2.6278 -3.7947 0.9304
33 1 4.4605 -5.2098 1.0539
34 1 5.6768 -7.2957 1.5162
35 1 5.2889 -6.6170 5.7133
36 1 4.0785 -4.5225 5.2754
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000347734793.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:53:01
Heat of formation + Delta-G solvation = -11.623175 kcal
Electronic energy + Delta-G solvation = -18555.938764 eV
Core-core repulsion = 15472.218211 eV
Total energy + Delta-G solvation = -3083.720552 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.17018 -39.37833 -37.72849 -34.74194 -33.63649 -32.67287 -32.07701 -30.70745
-28.26166 -27.79123 -25.14410 -23.95763 -23.26743 -21.83933 -20.62290 -18.77222
-18.26035 -17.03687 -16.66447 -16.60539 -16.53015 -15.61131 -15.49861 -15.39753
-14.86878 -14.66138 -14.53432 -14.36339 -14.02571 -13.14365 -12.94123 -12.84490
-12.67214 -12.59215 -12.42235 -12.26796 -12.17594 -12.02364 -11.89874 -11.85296
-11.36206 -11.33751 -10.74640 -10.61346 -10.14938 -9.82848 -8.77246 -7.81318
-5.28988 -0.59896 0.23501 0.49782 1.28737 1.45588 1.48375 1.54886
2.52171 2.61071 2.92875 3.33320 3.65795 3.74912 3.83693 4.06591
4.19719 4.20756 4.22698 4.38796 4.54258 4.73487 4.79797 4.83723
4.88912 4.93502 4.98094 5.06954 5.08363 5.30154 5.33792 5.36073
5.54960 5.63119 5.67091 5.75875 6.35849 6.53570 7.17322 7.91353
8.33882 9.22823
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.038086 B = 0.002057 C = 0.002043
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 735.004882 B =13609.374085 C =13702.395564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.177 3.823
2 N -0.625 5.625
3 C -0.260 4.260
4 H 0.075 0.925
5 C -0.062 4.062
6 N -0.944 5.944
7 Si 0.970 3.030
8 H -0.274 1.274
9 H -0.297 1.297
10 H -0.277 1.277
11 C 0.149 3.851
12 C -0.117 4.117
13 C -0.153 4.153
14 C 0.392 3.608
15 O -0.495 6.495
16 C -0.165 4.165
17 C -0.055 4.055
18 C -0.102 4.102
19 C -0.072 4.072
20 Br -0.039 7.039
21 C -0.107 4.107
22 C -0.073 4.073
23 H -0.006 1.006
24 H 0.017 0.983
25 H 0.034 0.966
26 H 0.246 0.754
27 H 0.058 0.942
28 H 0.068 0.932
29 H 0.028 0.972
30 H 0.025 0.975
31 H 0.128 0.872
32 H 0.133 0.867
33 H 0.175 0.825
34 H 0.165 0.835
35 H 0.151 0.849
36 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.933 -27.638 2.714 31.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 N -0.348 5.348
3 C -0.390 4.390
4 H 0.092 0.908
5 C -0.257 4.257
6 N -0.591 5.591
7 Si 0.798 3.202
8 H -0.199 1.199
9 H -0.223 1.223
10 H -0.203 1.203
11 C 0.023 3.977
12 C -0.158 4.158
13 C -0.191 4.191
14 C 0.272 3.728
15 O -0.373 6.373
16 C -0.166 4.166
17 C -0.074 4.074
18 C -0.122 4.122
19 C -0.151 4.151
20 Br 0.047 6.953
21 C -0.126 4.126
22 C -0.092 4.092
23 H 0.013 0.987
24 H 0.036 0.964
25 H 0.053 0.947
26 H 0.055 0.945
27 H 0.076 0.924
28 H 0.086 0.914
29 H 0.047 0.953
30 H 0.043 0.957
31 H 0.146 0.854
32 H 0.151 0.849
33 H 0.192 0.808
34 H 0.183 0.817
35 H 0.168 0.832
36 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 13.974 -27.768 3.359 31.267
hybrid contribution -0.258 1.716 0.543 1.818
sum 13.716 -26.052 3.902 29.700
Atomic orbital electron populations
1.20529 0.83002 0.96126 0.97138 1.44305 1.02244 1.02223 1.86031
1.19569 0.98171 0.86669 1.34591 0.90758 1.25876 0.98595 1.02200
0.98988 1.70247 1.19482 1.27404 1.42007 0.85290 0.77513 0.79327
0.78030 1.19929 1.22295 1.20284 1.21084 0.96290 0.86664 0.93649
1.21859 0.98446 0.95578 0.99872 1.22078 1.04249 0.98493 0.94233
1.23147 0.74182 0.83387 0.92082 1.90558 1.43322 1.54151 1.49243
1.20765 1.03187 0.97461 0.95205 1.21832 0.93253 0.92178 1.00111
1.21452 0.98187 0.97100 0.95423 1.22323 1.01458 0.94663 0.96697
1.96778 1.74295 1.28050 1.96160 1.21226 0.97843 0.93840 0.99724
1.21522 0.95414 0.95595 0.96717 0.98722 0.96394 0.94745 0.94483
0.92362 0.91368 0.95284 0.95650 0.85397 0.84922 0.80760 0.81731
0.83173 0.85160
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.11 9.01 127.77 1.15 10.27 16
2 N -0.62 -32.15 2.93 -726.94 -2.13 -34.28 16
3 C -0.26 -14.63 9.67 84.03 0.81 -13.81 16
4 H 0.07 3.99 7.84 -2.91 -0.02 3.96 16
5 C -0.06 -3.63 5.13 84.86 0.44 -3.20 16
6 N -0.94 -58.58 10.58 21.65 0.23 -58.35 16
7 Si 0.97 46.48 29.57 68.60 2.03 48.51 16
8 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16
9 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16
10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16
11 C 0.15 5.71 5.71 86.38 0.49 6.21 16
12 C -0.12 -4.40 4.83 30.59 0.15 -4.26 16
13 C -0.15 -3.62 4.31 29.85 0.13 -3.49 16
14 C 0.39 10.75 7.11 28.02 0.20 10.95 16
15 O -0.50 -18.73 15.97 -2.96 -0.05 -18.78 16
16 C -0.16 -3.41 5.87 -20.15 -0.12 -3.53 16
17 C -0.06 -0.75 9.47 22.57 0.21 -0.53 16
18 C -0.10 -1.26 9.76 22.24 0.22 -1.05 16
19 C -0.07 -1.06 6.23 22.41 0.14 -0.92 16
20 Br -0.04 -0.51 33.69 -20.37 -0.69 -1.20 16
21 C -0.11 -1.76 9.76 22.24 0.22 -1.55 16
22 C -0.07 -1.52 9.60 22.57 0.22 -1.31 16
23 H -0.01 -0.32 7.42 -2.38 -0.02 -0.34 16
24 H 0.02 0.97 7.19 -2.39 -0.02 0.96 16
25 H 0.03 1.46 7.84 -2.39 -0.02 1.44 16
26 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16
27 H 0.06 2.06 8.03 -2.39 -0.02 2.04 16
28 H 0.07 2.19 7.86 -2.39 -0.02 2.17 16
29 H 0.03 1.24 8.10 -2.39 -0.02 1.22 16
30 H 0.02 1.14 8.10 -2.39 -0.02 1.12 16
31 H 0.13 2.27 8.09 -2.39 -0.02 2.25 16
32 H 0.13 2.19 8.08 -2.39 -0.02 2.17 16
33 H 0.18 1.27 7.05 -2.91 -0.02 1.25 16
34 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16
35 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16
36 H 0.13 2.94 7.65 -2.91 -0.02 2.91 16
Total: -1.00 -74.21 328.22 4.72 -69.49
By element:
Atomic # 1 Polarization: -0.25 SS G_CDS: 1.07 Total: 0.82 kcal
Atomic # 6 Polarization: -10.47 SS G_CDS: 4.25 Total: -6.22 kcal
Atomic # 7 Polarization: -90.73 SS G_CDS: -1.90 Total: -92.62 kcal
Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.78 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal
Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.20 kcal
Total: -74.21 4.72 -69.49 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347734793.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.868 kcal
(2) G-P(sol) polarization free energy of solvation -74.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.623 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds