Wall clock time and date at job start Tue Mar 31 2020 15:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48498 * 109.47130 * 269.99659 * 3 2 1 5 5 H 1.48499 * 109.47433 * 29.99882 * 3 2 1 6 6 H 1.48509 * 109.47142 * 149.99841 * 3 2 1 7 7 C 1.37878 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99872 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.39819 * 119.99789 * 274.99817 * 10 9 7 12 12 C 1.38877 * 120.05307 * 299.65702 * 11 10 9 13 13 C 1.38117 * 119.95579 * 179.76622 * 12 11 10 14 14 C 1.38465 * 120.04713 * 0.47876 * 13 12 11 15 15 F 1.35097 * 119.95206 * 179.74168 * 14 13 12 16 16 C 1.38467 * 120.10046 * 359.77610 * 14 13 12 17 17 C 1.38124 * 120.04607 * 359.97438 * 16 14 13 18 18 S 1.65597 * 120.00216 * 94.99717 * 10 9 7 19 19 O 1.42094 * 106.40285 * 330.86625 * 18 10 9 20 20 O 1.42106 * 106.40253 * 197.94629 * 18 10 9 21 21 C 1.76195 * 107.21639 * 84.40678 * 18 10 9 22 22 C 1.41385 * 126.58068 * 90.00312 * 21 18 10 23 23 C 1.34516 * 106.84388 * 179.73297 * 22 21 18 24 24 O 1.34308 * 108.41731 * 0.25994 * 23 22 21 25 25 C 1.34304 * 109.47747 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99850 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46899 * 59.99475 * 9 7 2 28 28 H 1.09004 * 109.46910 * 300.00117 * 9 7 2 29 29 H 1.08002 * 120.02170 * 359.97438 * 12 11 10 30 30 H 1.07994 * 119.97980 * 180.23281 * 13 12 11 31 31 H 1.07995 * 119.98064 * 179.97438 * 16 14 13 32 32 H 1.08000 * 120.02128 * 179.97438 * 17 16 14 33 33 H 1.08004 * 126.57849 * 359.97438 * 22 21 18 34 34 H 1.07992 * 125.79030 * 180.22513 * 23 22 21 35 35 H 1.07995 * 125.79039 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.7384 -4.0760 -1.2039 12 6 1.8990 -4.5745 -2.1916 13 6 2.4296 -5.0272 -3.3838 14 6 3.7983 -4.9935 -3.5906 15 9 4.3156 -5.4416 -4.7554 16 6 4.6376 -4.5018 -2.6052 17 6 4.1109 -4.0433 -1.4135 18 16 2.6450 -4.3226 1.4311 19 8 2.5447 -3.3147 2.4276 20 8 3.8434 -5.0400 1.1691 21 6 1.4182 -5.5272 1.8164 22 6 1.4215 -6.8869 1.4290 23 6 0.3069 -7.4403 1.9396 24 8 -0.3704 -6.4919 2.6071 25 6 0.2967 -5.3286 2.5321 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 0.8317 -4.6050 -2.0290 30 1 1.7769 -5.4114 -4.1536 31 1 5.7049 -4.4768 -2.7685 32 1 4.7660 -3.6603 -0.6451 33 1 2.1764 -7.3864 0.8398 34 1 0.0072 -8.4721 1.8308 35 1 -0.0122 -4.3937 2.9756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349969629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:00 Heat of formation + Delta-G solvation = -66.195109 kcal Electronic energy + Delta-G solvation = -25480.701545 eV Core-core repulsion = 21487.625663 eV Total energy + Delta-G solvation = -3993.075882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.062 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.65544 -42.67123 -39.05804 -36.73056 -35.39523 -35.29343 -33.22924 -32.60187 -30.89388 -29.73904 -29.08443 -26.66025 -23.29687 -22.66397 -22.57702 -21.76710 -21.57297 -19.04080 -18.29792 -17.45171 -17.22383 -16.69959 -16.15672 -15.92377 -15.78303 -15.50805 -15.31659 -14.71431 -14.43592 -14.29823 -13.98399 -13.30761 -13.21950 -12.97732 -12.80520 -12.67700 -12.52337 -12.19953 -11.82990 -11.59728 -11.43531 -11.27205 -11.11901 -10.98637 -10.78001 -10.65120 -10.42736 -10.14297 -10.01549 -8.90210 -8.87953 -8.83176 -8.53387 -7.83574 -6.15972 -4.19985 0.71140 1.44720 1.49095 1.52882 2.16458 2.94920 3.28317 3.34575 3.39534 3.50491 3.86593 4.18168 4.38244 4.43895 4.51599 4.76244 5.02720 5.08674 5.12092 5.21294 5.29185 5.47879 5.54840 5.62822 5.74853 5.91120 6.13351 6.23165 6.27203 6.36853 6.45655 6.73376 6.77260 6.95260 7.09276 7.13548 7.55826 7.81319 8.04298 8.81512 9.45641 10.92717 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.007041 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.311220 B = 3975.849932 C = 6284.594224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.064 0.936 9 C 0.255 3.745 10 N -0.938 5.938 11 C 0.167 3.833 12 C -0.092 4.092 13 C -0.145 4.145 14 C 0.081 3.919 15 F -0.147 7.147 16 C -0.141 4.141 17 C -0.079 4.079 18 S 2.707 3.293 19 O -0.936 6.936 20 O -0.963 6.963 21 C -0.763 4.763 22 C -0.135 4.135 23 C -0.054 4.054 24 O -0.171 6.171 25 C 0.105 3.895 26 H 0.265 0.735 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 -13.619 -0.978 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.082 0.918 9 C 0.135 3.865 10 N -0.770 5.770 11 C 0.071 3.929 12 C -0.114 4.114 13 C -0.165 4.165 14 C 0.061 3.939 15 F -0.125 7.125 16 C -0.161 4.161 17 C -0.101 4.101 18 S 2.796 3.204 19 O -0.926 6.926 20 O -0.953 6.953 21 C -0.848 4.848 22 C -0.154 4.154 23 C -0.121 4.121 24 O -0.064 6.064 25 C 0.033 3.967 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.225 0.775 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.034 -13.385 -0.271 13.427 hybrid contribution -0.067 0.554 -0.475 0.732 sum 0.968 -12.831 -0.745 12.889 Atomic orbital electron populations 1.69904 1.05987 1.27330 1.50215 1.24893 0.94911 0.99293 0.94682 0.86484 0.80051 0.82749 0.78175 1.20536 1.21009 1.19554 1.21387 0.93767 0.90144 1.51409 0.91827 1.19311 0.86715 0.81574 0.98896 1.55518 1.59452 1.44035 1.17972 1.17332 0.91452 0.96384 0.87695 1.21119 1.00529 0.97031 0.92711 1.20900 0.93188 1.03692 0.98711 1.17649 0.92131 1.01458 0.82667 1.91455 1.87483 1.87235 1.46374 1.20919 1.00148 1.01775 0.93231 1.21253 0.94571 0.97581 0.96658 1.01681 0.73266 0.72508 0.72972 1.93625 1.86259 1.55841 1.56893 1.93529 1.42293 1.74587 1.84916 1.32472 1.19890 1.14551 1.17925 1.21415 0.99507 0.91661 1.02835 1.24173 0.93877 0.94423 0.99610 1.84085 1.45908 1.17971 1.58432 1.24250 0.88953 0.88964 0.94548 0.92547 0.93971 0.94077 0.84677 0.84862 0.84702 0.84539 0.82242 0.77487 0.75966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 13.29 55.43 0.74 -24.13 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.05 9.36 -34.44 -0.32 -14.37 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.25 5.93 5.01 -5.19 -0.03 5.90 16 10 N -0.94 -18.61 2.83 -59.78 -0.17 -18.78 16 11 C 0.17 3.04 5.25 -83.74 -0.44 2.60 16 12 C -0.09 -1.46 9.41 -39.39 -0.37 -1.83 16 13 C -0.15 -2.06 10.02 -39.54 -0.40 -2.46 16 14 C 0.08 1.20 7.30 -39.41 -0.29 0.91 16 15 F -0.15 -2.12 17.26 2.25 0.04 -2.08 16 16 C -0.14 -2.13 10.02 -39.54 -0.40 -2.53 16 17 C -0.08 -1.38 8.61 -39.39 -0.34 -1.72 16 18 S 2.71 51.31 5.70 -107.50 -0.61 50.70 16 19 O -0.94 -20.59 17.04 -57.17 -0.97 -21.57 16 20 O -0.96 -18.76 15.52 -57.17 -0.89 -19.65 16 21 C -0.76 -12.02 6.23 -39.70 -0.25 -12.27 16 22 C -0.13 -1.80 10.75 -39.70 -0.43 -2.23 16 23 C -0.05 -0.60 12.09 29.42 0.36 -0.25 16 24 O -0.17 -2.20 10.65 5.69 0.06 -2.14 16 25 C 0.11 1.49 11.86 29.42 0.35 1.84 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.04 1.00 7.58 -51.93 -0.39 0.60 16 28 H 0.04 0.97 7.76 -51.93 -0.40 0.57 16 29 H 0.14 1.96 7.95 -52.49 -0.42 1.55 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.14 2.37 7.52 -52.49 -0.39 1.97 16 33 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 34 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.22 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -32.06 331.75 -7.74 -39.81 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.27 Total: 1.44 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -2.64 Total: -24.75 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.57 Total: -42.91 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.80 Total: -43.35 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 51.31 SS G_CDS: -0.61 Total: 50.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.06 -7.74 -39.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349969629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.389 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds