Wall clock time and date at job start Tue Mar 31 2020 15:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48498 * 109.47130 * 269.99659 * 3 2 1 5 5 H 1.48499 * 109.47433 * 29.99882 * 3 2 1 6 6 H 1.48509 * 109.47142 * 149.99841 * 3 2 1 7 7 C 1.37878 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99872 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.39819 * 119.99789 * 274.99817 * 10 9 7 12 12 C 1.38877 * 120.05307 * 299.65702 * 11 10 9 13 13 C 1.38117 * 119.95579 * 179.76622 * 12 11 10 14 14 C 1.38465 * 120.04713 * 0.47876 * 13 12 11 15 15 F 1.35097 * 119.95206 * 179.74168 * 14 13 12 16 16 C 1.38467 * 120.10046 * 359.77610 * 14 13 12 17 17 C 1.38124 * 120.04607 * 359.97438 * 16 14 13 18 18 S 1.65597 * 120.00216 * 94.99717 * 10 9 7 19 19 O 1.42094 * 106.40285 * 330.86625 * 18 10 9 20 20 O 1.42106 * 106.40253 * 197.94629 * 18 10 9 21 21 C 1.76195 * 107.21639 * 84.40678 * 18 10 9 22 22 C 1.41385 * 126.58068 * 90.00312 * 21 18 10 23 23 C 1.34516 * 106.84388 * 179.73297 * 22 21 18 24 24 O 1.34308 * 108.41731 * 0.25994 * 23 22 21 25 25 C 1.34304 * 109.47747 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99850 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46899 * 59.99475 * 9 7 2 28 28 H 1.09004 * 109.46910 * 300.00117 * 9 7 2 29 29 H 1.08002 * 120.02170 * 359.97438 * 12 11 10 30 30 H 1.07994 * 119.97980 * 180.23281 * 13 12 11 31 31 H 1.07995 * 119.98064 * 179.97438 * 16 14 13 32 32 H 1.08000 * 120.02128 * 179.97438 * 17 16 14 33 33 H 1.08004 * 126.57849 * 359.97438 * 22 21 18 34 34 H 1.07992 * 125.79030 * 180.22513 * 23 22 21 35 35 H 1.07995 * 125.79039 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.7384 -4.0760 -1.2039 12 6 1.8990 -4.5745 -2.1916 13 6 2.4296 -5.0272 -3.3838 14 6 3.7983 -4.9935 -3.5906 15 9 4.3156 -5.4416 -4.7554 16 6 4.6376 -4.5018 -2.6052 17 6 4.1109 -4.0433 -1.4135 18 16 2.6450 -4.3226 1.4311 19 8 2.5447 -3.3147 2.4276 20 8 3.8434 -5.0400 1.1691 21 6 1.4182 -5.5272 1.8164 22 6 1.4215 -6.8869 1.4290 23 6 0.3069 -7.4403 1.9396 24 8 -0.3704 -6.4919 2.6071 25 6 0.2967 -5.3286 2.5321 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 0.8317 -4.6050 -2.0290 30 1 1.7769 -5.4114 -4.1536 31 1 5.7049 -4.4768 -2.7685 32 1 4.7660 -3.6603 -0.6451 33 1 2.1764 -7.3864 0.8398 34 1 0.0072 -8.4721 1.8308 35 1 -0.0122 -4.3937 2.9756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349969629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:59 Heat of formation + Delta-G solvation = -86.574350 kcal Electronic energy + Delta-G solvation = -25481.585255 eV Core-core repulsion = 21487.625663 eV Total energy + Delta-G solvation = -3993.959592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.82850 -43.70822 -40.36517 -38.30564 -36.95302 -36.85318 -34.56051 -34.30577 -32.11937 -30.78367 -30.58279 -28.40737 -24.97563 -24.00104 -23.82368 -22.96446 -22.74337 -20.29829 -19.56196 -18.88653 -18.57191 -18.46747 -17.58697 -17.25448 -17.07598 -16.73768 -16.50435 -16.38358 -15.93005 -15.44377 -15.31643 -14.68724 -14.50520 -14.20684 -14.15541 -14.01875 -13.82862 -13.76580 -13.33686 -13.17383 -13.09822 -12.96113 -12.78160 -12.51434 -12.39705 -12.18289 -12.07370 -11.75212 -11.56773 -10.59995 -10.47249 -10.04944 -9.89538 -9.22861 -8.20952 -6.31208 -0.72093 0.18398 0.29827 0.33593 1.15021 1.40364 1.42065 1.52280 1.93293 2.09992 2.41593 2.59866 2.75388 3.10693 3.16978 3.30553 3.80321 3.82902 3.89086 3.95895 4.12676 4.30708 4.35513 4.46185 4.67031 4.77899 4.87043 4.97154 5.11797 5.15916 5.19775 5.23772 5.27778 5.54919 5.64877 5.75309 5.76472 6.05726 6.12090 6.74478 7.36872 8.86380 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.007041 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.311220 B = 3975.849932 C = 6284.594224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.269 3.731 10 N -0.940 5.940 11 C 0.137 3.863 12 C -0.095 4.095 13 C -0.133 4.133 14 C 0.082 3.918 15 F -0.141 7.141 16 C -0.138 4.138 17 C -0.101 4.101 18 S 2.714 3.286 19 O -0.978 6.978 20 O -0.975 6.975 21 C -0.777 4.777 22 C -0.162 4.162 23 C -0.027 4.027 24 O -0.168 6.168 25 C 0.102 3.898 26 H 0.268 0.732 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.146 0.854 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.170 0.830 34 H 0.259 0.741 35 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -15.211 -2.052 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.147 3.853 10 N -0.771 5.771 11 C 0.042 3.958 12 C -0.117 4.117 13 C -0.153 4.153 14 C 0.062 3.938 15 F -0.120 7.120 16 C -0.157 4.157 17 C -0.122 4.122 18 S 2.808 3.192 19 O -0.969 6.969 20 O -0.965 6.965 21 C -0.867 4.867 22 C -0.181 4.181 23 C -0.093 4.093 24 O -0.060 6.060 25 C 0.029 3.971 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.163 0.837 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.143 0.857 33 H 0.188 0.812 34 H 0.275 0.725 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.575 -14.960 -1.372 15.034 hybrid contribution 0.091 0.900 -0.178 0.921 sum 0.666 -14.060 -1.550 14.161 Atomic orbital electron populations 1.69974 1.06911 1.28132 1.50948 1.25599 0.95747 1.02172 0.94547 0.85669 0.78776 0.79467 0.78537 1.19547 1.20236 1.19889 1.21709 0.93537 0.91987 1.51177 0.92980 1.18905 0.86746 0.81629 0.97985 1.55265 1.59010 1.43792 1.19006 1.17647 0.92212 0.98055 0.87845 1.21256 1.00862 0.96859 0.92691 1.21200 0.93393 1.02130 0.98536 1.17726 0.92436 1.00982 0.82629 1.91475 1.87454 1.87074 1.45961 1.21119 1.01531 1.00743 0.92297 1.21290 0.94392 0.98938 0.97555 1.00979 0.73621 0.72409 0.72173 1.93566 1.87142 1.57967 1.58189 1.93498 1.43566 1.74537 1.84925 1.31971 1.19878 1.14971 1.19886 1.21661 1.01267 0.90681 1.04508 1.25081 0.92128 0.95553 0.96556 1.84126 1.45737 1.17793 1.58365 1.24475 0.88549 0.89938 0.94168 0.92297 0.94521 0.95018 0.83656 0.81636 0.82400 0.85678 0.81239 0.72538 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.62 13.29 21.45 0.28 -51.34 16 2 C 0.02 1.06 5.46 84.65 0.46 1.52 16 3 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.54 -29.78 9.36 25.60 0.24 -29.54 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.27 12.89 5.01 85.63 0.43 13.32 16 10 N -0.94 -38.41 2.83 -343.06 -0.97 -39.38 16 11 C 0.14 5.04 5.25 38.17 0.20 5.24 16 12 C -0.10 -2.93 9.41 22.39 0.21 -2.72 16 13 C -0.13 -3.47 10.02 22.30 0.22 -3.25 16 14 C 0.08 2.26 7.30 22.38 0.16 2.42 16 15 F -0.14 -3.69 17.26 44.97 0.78 -2.92 16 16 C -0.14 -4.00 10.02 22.30 0.22 -3.78 16 17 C -0.10 -3.54 8.61 22.40 0.19 -3.34 16 18 S 2.71 106.54 5.70 -56.49 -0.32 106.22 16 19 O -0.98 -45.15 17.04 -128.00 -2.18 -47.33 16 20 O -0.97 -39.17 15.52 -128.00 -1.99 -41.16 16 21 C -0.78 -24.37 6.23 22.19 0.14 -24.23 16 22 C -0.16 -4.06 10.75 22.19 0.24 -3.83 16 23 C -0.03 -0.51 12.09 66.97 0.81 0.30 16 24 O -0.17 -3.93 10.65 -2.54 -0.03 -3.95 16 25 C 0.10 2.82 11.86 66.97 0.79 3.61 16 26 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 28 H 0.03 1.57 7.76 -2.39 -0.02 1.55 16 29 H 0.15 4.08 7.95 -2.91 -0.02 4.06 16 30 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.13 4.56 7.52 -2.91 -0.02 4.54 16 33 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 34 H 0.26 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.23 5.69 8.06 -2.91 -0.02 5.67 16 Total: -1.00 -69.72 331.75 3.05 -66.67 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.13 Total: 11.73 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 4.33 Total: -44.28 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -0.69 Total: -90.72 kcal Atomic # 8 Polarization: -88.25 SS G_CDS: -4.20 Total: -92.44 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 106.54 SS G_CDS: -0.32 Total: 106.22 kcal Total: -69.72 3.05 -66.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349969629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.903 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds