Wall clock time and date at job start Tue Mar 31 2020 15:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48499 * 109.46860 * 239.99669 * 3 2 1 5 5 H 1.48492 * 109.47474 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47116 * 120.00080 * 3 2 1 7 7 C 1.38723 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.76202 * 100.00225 * 185.12111 * 9 7 2 11 11 C 1.39221 * 120.02083 * 265.49598 * 10 9 7 12 12 C 1.38136 * 120.19916 * 180.02562 * 11 10 9 13 13 C 1.38090 * 120.24615 * 359.71968 * 12 11 10 14 14 C 1.39637 * 120.03306 * 0.55392 * 13 12 11 15 15 C 1.47861 * 120.09722 * 179.71873 * 14 13 12 16 16 O 1.21552 * 119.99614 * 179.72632 * 15 14 13 17 17 N 1.34781 * 120.00148 * 359.73046 * 15 14 13 18 18 C 1.46496 * 119.99760 * 179.97438 * 17 15 14 19 19 H 1.08989 * 108.85583 * 36.41895 * 18 17 15 20 20 C 1.52944 * 108.88615 * 155.00223 * 18 17 15 21 21 C 1.55153 * 108.81052 * 90.64002 * 20 18 17 22 22 S 1.83535 * 101.10752 * 41.44770 * 21 20 18 23 23 O 1.42102 * 109.47662 * 211.56261 * 22 21 20 24 24 C 1.53709 * 108.77549 * 277.90580 * 18 17 15 25 25 C 1.38837 * 120.01808 * 85.51184 * 10 9 7 26 26 H 0.96996 * 119.99626 * 0.02562 * 1 2 3 27 27 H 1.07989 * 119.90155 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.87902 * 179.97438 * 12 11 10 29 29 H 1.07994 * 119.98285 * 180.30142 * 13 12 11 30 30 H 0.96997 * 119.99836 * 0.02562 * 17 15 14 31 31 H 1.09000 * 109.60278 * 210.48252 * 20 18 17 32 32 H 1.08998 * 109.59910 * 330.80115 * 20 18 17 33 33 H 1.09000 * 111.12836 * 159.26012 * 21 20 18 34 34 H 1.09001 * 111.13120 * 283.43377 * 21 20 18 35 35 H 1.08997 * 110.34116 * 0.98602 * 24 18 17 36 36 H 1.09003 * 110.33929 * 123.13015 * 24 18 17 37 37 H 1.08004 * 120.12138 * 0.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0099 -1.2014 0.0005 8 1 3.0900 -1.2013 0.0010 9 16 1.1290 -2.7273 0.0019 10 6 2.4729 -3.8563 0.1570 11 6 3.0357 -4.4296 -0.9800 12 6 4.0890 -5.3156 -0.8626 13 6 4.5945 -5.6342 0.3823 14 6 4.0338 -5.0695 1.5298 15 6 4.5700 -5.4145 2.8639 16 8 4.0837 -4.9180 3.8612 17 7 5.5978 -6.2794 2.9741 18 6 6.1293 -6.6207 4.2959 19 1 5.3042 -6.6649 5.0067 20 6 6.7937 -7.9963 4.2223 21 6 8.2919 -7.8097 3.8647 22 16 8.7261 -6.3617 4.9055 23 8 9.7299 -5.5946 4.2549 24 6 7.1064 -5.5187 4.7359 25 6 2.9708 -4.1750 1.4132 26 1 -0.4849 0.8400 -0.0004 27 1 2.6472 -4.1816 -1.9565 28 1 4.5215 -5.7576 -1.7480 29 1 5.4213 -6.3237 0.4688 30 1 5.9860 -6.6752 2.1782 31 1 6.7074 -8.4962 5.1870 32 1 6.3064 -8.5970 3.4543 33 1 8.8759 -8.6845 4.1507 34 1 8.4180 -7.5844 2.8058 35 1 7.1632 -4.7378 3.9776 36 1 6.7955 -5.0960 5.6913 37 1 2.5357 -3.7323 2.2971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354723078.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:51 Heat of formation + Delta-G solvation = -49.113819 kcal Electronic energy + Delta-G solvation = -21910.667427 eV Core-core repulsion = 18484.545422 eV Total energy + Delta-G solvation = -3426.122005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21147 -38.16089 -36.73600 -35.94460 -32.98827 -32.52161 -30.88714 -30.54903 -29.30625 -25.59027 -25.52835 -23.68439 -22.36165 -21.02295 -20.51404 -18.42924 -17.81375 -17.38950 -16.78335 -16.21375 -15.62934 -15.37089 -15.20825 -14.86433 -14.76857 -14.45097 -14.27742 -13.84078 -13.76552 -13.46015 -13.16211 -12.96571 -12.52170 -12.28768 -12.21257 -11.86779 -11.72276 -11.43485 -11.19068 -11.15977 -11.08145 -10.72981 -10.34251 -10.01777 -9.83309 -9.39909 -9.16749 -9.04794 -8.71275 -8.60829 -8.06838 -6.73482 -6.29997 -4.04396 1.10638 1.35905 1.62174 1.96452 2.96619 2.97879 3.20266 3.22759 3.25840 3.41062 3.44401 4.04622 4.14209 4.23651 4.27970 4.54696 4.66655 4.78886 4.85980 5.03219 5.06624 5.14457 5.19514 5.31174 5.41437 5.45314 5.55308 5.70449 5.74448 5.82996 5.93799 6.20537 6.26837 6.53091 6.59135 6.88871 7.14260 7.37199 7.55886 8.19793 8.30919 9.15797 10.76702 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002872 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.083382 B = 9745.885784 C =10511.477890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.075 0.925 9 S -0.033 6.033 10 C -0.106 4.106 11 C -0.054 4.054 12 C -0.141 4.141 13 C -0.091 4.091 14 C -0.157 4.157 15 C 0.565 3.435 16 O -0.529 6.529 17 N -0.733 5.733 18 C 0.154 3.846 19 H 0.104 0.896 20 C -0.118 4.118 21 C -0.429 4.429 22 S 1.214 4.786 23 O -0.855 6.855 24 C -0.435 4.435 25 C -0.018 4.018 26 H 0.271 0.729 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.398 0.602 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.753 -19.921 9.289 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.669 4.669 8 H 0.093 0.907 9 S 0.201 5.799 10 C -0.217 4.217 11 C -0.075 4.075 12 C -0.161 4.161 13 C -0.110 4.110 14 C -0.162 4.162 15 C 0.354 3.646 16 O -0.406 6.406 17 N -0.387 5.387 18 C 0.049 3.951 19 H 0.122 0.878 20 C -0.157 4.157 21 C -0.567 4.567 22 S 1.413 4.587 23 O -0.850 6.850 24 C -0.574 4.574 25 C -0.040 4.040 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.233 0.767 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.960 -19.305 10.461 26.019 hybrid contribution 1.527 1.565 -2.476 3.304 sum 15.487 -17.740 7.984 24.866 Atomic orbital electron populations 1.69977 1.05889 1.27818 1.46852 1.24995 0.95129 0.99094 0.94265 0.86180 0.79258 0.80871 0.79050 1.19809 1.20665 1.19784 1.22795 0.94843 0.90217 1.59030 0.90710 1.83591 1.04174 0.97099 1.95015 1.22872 1.02972 1.02040 0.93820 1.21974 0.93284 0.93363 0.98908 1.21062 0.98184 0.99915 0.96902 1.21125 0.98657 0.98800 0.92409 1.19863 1.00838 1.03375 0.92091 1.18433 0.78899 0.78064 0.89242 1.90768 1.59348 1.51990 1.38463 1.46212 1.35847 1.47709 1.08897 1.21098 0.96858 0.91141 0.86047 0.87829 1.22220 0.92646 0.96192 1.04662 1.28178 1.02041 1.15557 1.10938 1.70867 0.83264 0.90634 1.13925 1.93163 1.47488 1.67214 1.77154 1.28450 1.13780 1.06521 1.08678 1.21957 0.91907 0.91900 0.98222 0.91965 0.85000 0.85844 0.86717 0.76678 0.88121 0.89360 0.85876 0.88881 0.87992 0.85329 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.10 5.49 -17.46 -0.10 2.01 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.89 9.46 30.91 0.29 -14.60 16 8 H 0.07 2.12 7.79 -52.48 -0.41 1.71 16 9 S -0.03 -0.87 21.41 -107.50 -2.30 -3.17 16 10 C -0.11 -2.29 5.45 -38.99 -0.21 -2.51 16 11 C -0.05 -0.98 9.79 -39.25 -0.38 -1.37 16 12 C -0.14 -2.05 10.02 -39.67 -0.40 -2.45 16 13 C -0.09 -1.27 9.54 -39.11 -0.37 -1.64 16 14 C -0.16 -2.66 5.87 -105.00 -0.62 -3.27 16 15 C 0.56 8.90 7.69 -12.32 -0.09 8.81 16 16 O -0.53 -10.08 16.01 5.32 0.09 -9.99 16 17 N -0.73 -8.00 4.77 -54.42 -0.26 -8.26 16 18 C 0.15 1.25 2.93 -67.59 -0.20 1.06 16 19 H 0.10 0.90 7.59 -51.94 -0.39 0.51 16 20 C -0.12 -0.50 5.88 -25.62 -0.15 -0.65 16 21 C -0.43 -2.06 7.47 38.30 0.29 -1.77 16 22 S 1.21 7.75 14.62 -107.50 -1.57 6.18 16 23 O -0.85 -12.13 18.15 -35.23 -0.64 -12.77 16 24 C -0.44 -3.80 7.04 37.53 0.26 -3.54 16 25 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 28 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.11 1.15 6.39 -52.49 -0.34 0.81 16 30 H 0.40 3.47 6.58 -40.82 -0.27 3.20 16 31 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.37 7.98 -51.93 -0.41 -0.04 16 33 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.28 7.88 -51.93 -0.41 0.87 16 36 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.14 3.08 7.65 -52.48 -0.40 2.68 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -39.54 343.89 -10.14 -49.68 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.30 Total: 1.96 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.04 Total: -20.66 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.47 Total: -33.13 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.55 Total: -22.76 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -3.87 Total: 3.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -39.54 -10.14 -49.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354723078.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.564 kcal (2) G-P(sol) polarization free energy of solvation -39.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds