Wall clock time and date at job start Tue Mar 31 2020 15:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48499 * 109.46860 * 239.99669 * 3 2 1 5 5 H 1.48492 * 109.47474 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47116 * 120.00080 * 3 2 1 7 7 C 1.38723 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.76202 * 100.00225 * 185.12111 * 9 7 2 11 11 C 1.39221 * 120.02083 * 265.49598 * 10 9 7 12 12 C 1.38136 * 120.19916 * 180.02562 * 11 10 9 13 13 C 1.38090 * 120.24615 * 359.71968 * 12 11 10 14 14 C 1.39637 * 120.03306 * 0.55392 * 13 12 11 15 15 C 1.47861 * 120.09722 * 179.71873 * 14 13 12 16 16 O 1.21552 * 119.99614 * 179.72632 * 15 14 13 17 17 N 1.34781 * 120.00148 * 359.73046 * 15 14 13 18 18 C 1.46496 * 119.99760 * 179.97438 * 17 15 14 19 19 H 1.08989 * 108.85583 * 36.41895 * 18 17 15 20 20 C 1.52944 * 108.88615 * 155.00223 * 18 17 15 21 21 C 1.55153 * 108.81052 * 90.64002 * 20 18 17 22 22 S 1.83535 * 101.10752 * 41.44770 * 21 20 18 23 23 O 1.42102 * 109.47662 * 211.56261 * 22 21 20 24 24 C 1.53709 * 108.77549 * 277.90580 * 18 17 15 25 25 C 1.38837 * 120.01808 * 85.51184 * 10 9 7 26 26 H 0.96996 * 119.99626 * 0.02562 * 1 2 3 27 27 H 1.07989 * 119.90155 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.87902 * 179.97438 * 12 11 10 29 29 H 1.07994 * 119.98285 * 180.30142 * 13 12 11 30 30 H 0.96997 * 119.99836 * 0.02562 * 17 15 14 31 31 H 1.09000 * 109.60278 * 210.48252 * 20 18 17 32 32 H 1.08998 * 109.59910 * 330.80115 * 20 18 17 33 33 H 1.09000 * 111.12836 * 159.26012 * 21 20 18 34 34 H 1.09001 * 111.13120 * 283.43377 * 21 20 18 35 35 H 1.08997 * 110.34116 * 0.98602 * 24 18 17 36 36 H 1.09003 * 110.33929 * 123.13015 * 24 18 17 37 37 H 1.08004 * 120.12138 * 0.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0099 -1.2014 0.0005 8 1 3.0900 -1.2013 0.0010 9 16 1.1290 -2.7273 0.0019 10 6 2.4729 -3.8563 0.1570 11 6 3.0357 -4.4296 -0.9800 12 6 4.0890 -5.3156 -0.8626 13 6 4.5945 -5.6342 0.3823 14 6 4.0338 -5.0695 1.5298 15 6 4.5700 -5.4145 2.8639 16 8 4.0837 -4.9180 3.8612 17 7 5.5978 -6.2794 2.9741 18 6 6.1293 -6.6207 4.2959 19 1 5.3042 -6.6649 5.0067 20 6 6.7937 -7.9963 4.2223 21 6 8.2919 -7.8097 3.8647 22 16 8.7261 -6.3617 4.9055 23 8 9.7299 -5.5946 4.2549 24 6 7.1064 -5.5187 4.7359 25 6 2.9708 -4.1750 1.4132 26 1 -0.4849 0.8400 -0.0004 27 1 2.6472 -4.1816 -1.9565 28 1 4.5215 -5.7576 -1.7480 29 1 5.4213 -6.3237 0.4688 30 1 5.9860 -6.6752 2.1782 31 1 6.7074 -8.4962 5.1870 32 1 6.3064 -8.5970 3.4543 33 1 8.8759 -8.6845 4.1507 34 1 8.4180 -7.5844 2.8058 35 1 7.1632 -4.7378 3.9776 36 1 6.7955 -5.0960 5.6913 37 1 2.5357 -3.7323 2.2971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354723078.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:50 Heat of formation + Delta-G solvation = -79.450062 kcal Electronic energy + Delta-G solvation = -21911.982906 eV Core-core repulsion = 18484.545422 eV Total energy + Delta-G solvation = -3427.437483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39603 -39.40902 -37.66633 -36.83105 -34.70080 -33.96686 -32.11260 -31.85579 -30.05137 -27.79143 -26.25337 -24.79593 -23.72355 -21.94751 -21.52833 -20.07108 -19.06525 -18.41098 -17.74543 -17.16237 -16.97857 -16.73464 -16.54532 -16.22055 -15.96236 -15.49740 -15.29874 -15.09715 -14.78738 -14.64602 -14.47795 -14.01457 -13.79338 -13.31500 -13.22827 -13.12459 -13.01111 -12.72640 -12.69877 -12.44992 -12.29422 -12.08031 -11.80655 -11.29970 -11.20793 -11.03765 -10.80261 -10.38914 -9.99207 -9.77234 -9.33505 -8.85189 -8.43892 -6.24181 -0.25427 0.18495 0.80745 1.25087 1.34291 1.40256 1.42852 1.59643 1.73678 2.03861 2.20007 2.72179 2.79296 2.88992 3.36272 3.55978 3.63269 3.79805 3.87481 3.93029 4.05619 4.12622 4.28611 4.29810 4.41460 4.59359 4.74488 4.80260 4.85714 5.02685 5.04684 5.14345 5.21783 5.25091 5.32956 5.39907 5.44050 5.79124 6.10550 6.36672 6.96334 7.06776 8.63117 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002872 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.083382 B = 9745.885784 C =10511.477890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.064 0.936 9 S -0.090 6.090 10 C -0.129 4.129 11 C -0.063 4.063 12 C -0.122 4.122 13 C -0.067 4.067 14 C -0.161 4.161 15 C 0.562 3.438 16 O -0.573 6.573 17 N -0.712 5.712 18 C 0.145 3.855 19 H 0.099 0.901 20 C -0.109 4.109 21 C -0.419 4.419 22 S 1.278 4.722 23 O -0.934 6.934 24 C -0.445 4.445 25 C -0.045 4.045 26 H 0.275 0.725 27 H 0.136 0.864 28 H 0.175 0.825 29 H 0.170 0.830 30 H 0.411 0.589 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.161 0.839 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.137 0.863 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.763 -23.151 8.933 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.688 4.688 8 H 0.082 0.918 9 S 0.144 5.856 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.141 4.141 13 C -0.085 4.085 14 C -0.166 4.166 15 C 0.350 3.650 16 O -0.453 6.453 17 N -0.366 5.366 18 C 0.040 3.960 19 H 0.117 0.883 20 C -0.147 4.147 21 C -0.558 4.558 22 S 1.479 4.521 23 O -0.930 6.930 24 C -0.583 4.583 25 C -0.067 4.067 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.192 0.808 29 H 0.187 0.813 30 H 0.250 0.750 31 H 0.161 0.839 32 H 0.120 0.880 33 H 0.179 0.821 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.156 0.844 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.002 -22.558 10.099 29.999 hybrid contribution 0.662 2.325 -2.352 3.373 sum 17.665 -20.233 7.747 27.954 Atomic orbital electron populations 1.70092 1.07417 1.28950 1.47556 1.25977 0.96069 1.02756 0.93539 0.85133 0.78115 0.76381 0.79229 1.18613 1.19195 1.19747 1.23023 0.94551 0.91811 1.59371 0.91752 1.83435 1.08395 0.98351 1.95374 1.22527 1.03072 1.02734 0.95659 1.22085 0.94453 0.94119 0.97727 1.21553 0.95890 0.97647 0.98989 1.21694 0.98539 0.97527 0.90773 1.20045 0.99740 1.02533 0.94288 1.18367 0.79844 0.78657 0.88155 1.90748 1.61127 1.53907 1.39561 1.46141 1.33851 1.45634 1.10932 1.21519 0.96952 0.93167 0.84326 0.88268 1.22304 0.91343 0.93440 1.07634 1.28149 1.02969 1.15056 1.09670 1.70066 0.79847 0.89171 1.13009 1.93017 1.50932 1.69863 1.79180 1.28522 1.15844 1.06046 1.07891 1.21645 0.94149 0.94239 0.96662 0.91564 0.84608 0.80767 0.81313 0.75034 0.83878 0.87982 0.82145 0.90095 0.92106 0.84447 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.18 13.22 21.63 0.29 -54.90 16 2 C 0.02 1.30 5.49 84.84 0.47 1.76 16 3 Si 0.99 45.64 29.55 68.60 2.03 47.66 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -32.45 9.46 67.94 0.64 -31.81 16 8 H 0.06 3.85 7.79 -2.91 -0.02 3.82 16 9 S -0.09 -5.01 21.41 -56.49 -1.21 -6.22 16 10 C -0.13 -5.81 5.45 22.65 0.12 -5.68 16 11 C -0.06 -2.24 9.79 22.48 0.22 -2.02 16 12 C -0.12 -3.06 10.02 22.21 0.22 -2.84 16 13 C -0.07 -1.61 9.54 22.57 0.22 -1.39 16 14 C -0.16 -5.37 5.87 -20.11 -0.12 -5.49 16 15 C 0.56 17.51 7.69 86.79 0.67 18.18 16 16 O -0.57 -22.74 16.01 -3.88 -0.06 -22.81 16 17 N -0.71 -13.82 4.77 -444.36 -2.12 -15.94 16 18 C 0.15 1.99 2.93 45.21 0.13 2.13 16 19 H 0.10 1.54 7.59 -2.39 -0.02 1.52 16 20 C -0.11 -0.35 5.88 31.31 0.18 -0.17 16 21 C -0.42 -2.02 7.47 72.72 0.54 -1.48 16 22 S 1.28 13.76 14.62 -56.49 -0.83 12.93 16 23 O -0.93 -26.13 18.15 -148.98 -2.70 -28.83 16 24 C -0.45 -7.43 7.04 72.22 0.51 -6.92 16 25 C -0.05 -1.96 9.34 22.70 0.21 -1.74 16 26 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.14 4.63 8.06 -2.92 -0.02 4.61 16 28 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.17 2.25 6.39 -2.91 -0.02 2.23 16 30 H 0.41 5.39 6.58 -92.71 -0.61 4.78 16 31 H 0.14 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.10 0.23 7.98 -2.39 -0.02 0.21 16 33 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.56 7.88 -2.39 -0.02 1.55 16 36 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.10 5.11 7.65 -2.91 -0.02 5.09 16 Total: -1.00 -95.84 343.89 -0.09 -95.93 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.50 Total: 9.66 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.02 Total: -37.48 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.83 Total: -70.83 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -2.77 Total: -51.64 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 16 Polarization: 8.74 SS G_CDS: -2.03 Total: 6.71 kcal Total: -95.84 -0.09 -95.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354723078.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.478 kcal (2) G-P(sol) polarization free energy of solvation -95.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds