Wall clock time and date at job start Tue Mar 31 2020 15:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86791 * 120.00279 * 2 1 4 4 H 1.48496 * 109.47584 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47305 * 30.00580 * 3 2 1 6 6 H 1.48504 * 109.46709 * 150.00054 * 3 2 1 7 7 C 1.38729 * 119.99172 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00798 * 359.97438 * 7 2 1 9 9 S 1.76209 * 119.99594 * 179.97438 * 7 2 1 10 10 C 1.76201 * 99.99721 * 185.11780 * 9 7 2 11 11 C 1.39218 * 120.02019 * 265.48703 * 10 9 7 12 12 C 1.38135 * 120.20235 * 179.75018 * 11 10 9 13 13 C 1.38077 * 120.24466 * 0.55298 * 12 11 10 14 14 C 1.39635 * 120.03814 * 359.45010 * 13 12 11 15 15 C 1.47856 * 120.10542 * 180.29704 * 14 13 12 16 16 O 1.21555 * 120.00261 * 180.02562 * 15 14 13 17 17 N 1.34782 * 119.99977 * 359.97438 * 15 14 13 18 18 C 1.46495 * 119.99985 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.96719 * 325.21322 * 18 17 15 20 20 C 1.53859 * 109.97466 * 203.91751 * 18 17 15 21 21 C 1.54280 * 108.92752 * 193.38289 * 20 18 17 22 22 S 1.83102 * 104.64544 * 27.96126 * 21 20 18 23 23 O 1.42093 * 109.47178 * 111.47965 * 22 21 20 24 24 C 1.55139 * 109.97223 * 86.45767 * 18 17 15 25 25 C 1.38834 * 120.02086 * 85.51334 * 10 9 7 26 26 H 0.97003 * 119.99342 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.90089 * 0.04703 * 11 10 9 28 28 H 1.08002 * 119.87936 * 180.27934 * 12 11 10 29 29 H 1.08005 * 119.98528 * 179.72099 * 13 12 11 30 30 H 0.97002 * 119.99540 * 0.02562 * 17 15 14 31 31 H 1.08994 * 109.61563 * 313.31065 * 20 18 17 32 32 H 1.09001 * 109.60482 * 73.46860 * 20 18 17 33 33 H 1.08996 * 110.40427 * 269.16530 * 21 20 18 34 34 H 1.09001 * 110.49547 * 146.79880 * 21 20 18 35 35 H 1.08995 * 110.85816 * 279.65421 * 24 18 17 36 36 H 1.09001 * 110.85786 * 43.30258 * 24 18 17 37 37 H 1.07997 * 120.12205 * 359.95666 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4399 0.7001 7 6 2.0098 -1.2015 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2017 -0.0012 10 6 4.0775 -2.9300 -0.1565 11 6 4.2923 -3.7042 0.9804 12 6 4.5271 -5.0604 0.8634 13 6 4.5619 -5.6553 -0.3822 14 6 4.3479 -4.8884 -1.5293 15 6 4.3783 -5.5250 -2.8634 16 8 4.1923 -4.8555 -3.8608 17 7 4.6134 -6.8476 -2.9738 18 6 4.6429 -7.4785 -4.2956 19 1 3.9171 -6.9997 -4.9529 20 6 4.3288 -8.9794 -4.1688 21 6 4.6916 -9.6803 -5.4944 22 16 6.0332 -8.6579 -6.2067 23 8 7.2515 -9.3887 -6.1786 24 6 6.0651 -7.3654 -4.9050 25 6 4.1050 -3.5204 -1.4128 26 1 -0.4849 0.8401 0.0004 27 1 4.2704 -3.2440 1.9572 28 1 4.6886 -5.6569 1.7491 29 1 4.7504 -6.7152 -0.4691 30 1 4.7622 -7.3818 -2.1779 31 1 4.9146 -9.4084 -3.3559 32 1 3.2672 -9.1146 -3.9621 33 1 3.8310 -9.6975 -6.1631 34 1 5.0456 -10.6939 -5.3058 35 1 6.2231 -6.3791 -5.3413 36 1 6.8266 -7.5867 -4.1572 37 1 3.9385 -2.9223 -2.2965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354723087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:03 Heat of formation + Delta-G solvation = -50.156388 kcal Electronic energy + Delta-G solvation = -21710.547731 eV Core-core repulsion = 18284.380517 eV Total energy + Delta-G solvation = -3426.167214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20583 -38.20105 -36.70971 -36.02101 -33.25888 -32.52639 -30.99485 -30.66086 -29.23464 -25.70890 -25.37669 -23.58351 -22.48685 -21.33181 -20.55636 -18.51087 -17.87313 -17.38461 -16.90270 -16.31043 -15.83925 -15.39559 -15.10567 -14.93499 -14.67593 -14.41698 -14.29947 -13.92120 -13.71752 -13.51705 -13.30362 -12.94729 -12.75482 -12.59846 -12.28031 -12.01508 -11.67967 -11.43109 -11.32052 -11.25201 -11.12183 -10.67630 -10.50857 -9.99850 -9.88624 -9.38348 -9.25447 -9.10878 -8.73791 -8.65278 -8.20687 -7.16903 -6.35687 -4.11512 1.02798 1.24687 1.53305 1.95811 2.80918 2.92484 3.01509 3.25236 3.36602 3.38515 3.47522 3.99413 4.17983 4.23672 4.30437 4.44083 4.58224 4.70314 4.81317 4.86307 4.96897 5.03171 5.11934 5.20173 5.29833 5.38658 5.51214 5.61497 5.67463 5.72906 5.84910 6.12033 6.19454 6.44283 6.51146 6.77292 7.04530 7.32692 7.88543 8.14340 8.41568 9.08183 10.73742 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.002513 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.572976 B =11138.122669 C =11524.387559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.095 3.905 3 Si 0.858 3.142 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.509 4.509 8 H 0.091 0.909 9 S -0.112 6.112 10 C -0.085 4.085 11 C -0.050 4.050 12 C -0.139 4.139 13 C -0.086 4.086 14 C -0.154 4.154 15 C 0.568 3.432 16 O -0.529 6.529 17 N -0.724 5.724 18 C 0.155 3.845 19 H 0.113 0.887 20 C -0.125 4.125 21 C -0.430 4.430 22 S 1.225 4.775 23 O -0.855 6.855 24 C -0.441 4.441 25 C -0.015 4.015 26 H 0.272 0.728 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.399 0.601 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -18.063 -8.418 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.164 1.164 7 C -0.656 4.656 8 H 0.109 0.891 9 S 0.122 5.878 10 C -0.196 4.196 11 C -0.071 4.071 12 C -0.159 4.159 13 C -0.105 4.105 14 C -0.159 4.159 15 C 0.356 3.644 16 O -0.405 6.405 17 N -0.377 5.377 18 C 0.049 3.951 19 H 0.131 0.869 20 C -0.164 4.164 21 C -0.567 4.567 22 S 1.423 4.577 23 O -0.850 6.850 24 C -0.580 4.580 25 C -0.037 4.037 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.235 0.765 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.654 -16.664 -9.946 21.675 hybrid contribution -0.250 -1.403 2.456 2.839 sum 9.404 -18.068 -7.490 21.702 Atomic orbital electron populations 1.69929 1.05865 1.27841 1.47530 1.24744 0.94519 0.98863 0.93258 0.86731 0.81569 0.83461 0.79990 1.18981 1.19780 1.16351 1.22235 0.86674 0.97707 1.59007 0.89086 1.83096 1.11303 0.97743 1.95637 1.22210 1.02150 1.01113 0.94079 1.21915 0.93382 0.93028 0.98817 1.21049 1.02705 0.95133 0.97031 1.21169 0.98456 0.98575 0.92335 1.19811 1.08921 0.95030 0.92162 1.18375 0.75433 0.81366 0.89193 1.90770 1.48616 1.62719 1.38412 1.45855 1.74288 1.09001 1.08545 1.21601 0.95107 0.92516 0.85906 0.86949 1.22192 1.04128 0.93085 0.96982 1.27905 1.14751 1.09379 1.04702 1.71015 0.88834 0.92579 1.05291 1.93137 1.39843 1.70032 1.81970 1.28749 1.01805 1.14253 1.13205 1.21905 0.91141 0.92582 0.98082 0.91778 0.84861 0.85621 0.86447 0.76490 0.91048 0.89339 0.85473 0.88086 0.85198 0.88423 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.99 13.97 55.49 0.78 -25.22 16 2 C 0.10 2.71 5.50 -17.46 -0.10 2.61 16 3 Si 0.86 20.76 27.73 -169.99 -4.71 16.05 16 4 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.24 -5.61 6.74 56.52 0.38 -5.23 16 7 C -0.51 -14.40 10.01 30.91 0.31 -14.09 16 8 H 0.09 2.79 8.02 -52.49 -0.42 2.37 16 9 S -0.11 -2.66 19.38 -107.50 -2.08 -4.75 16 10 C -0.08 -1.72 5.45 -39.00 -0.21 -1.94 16 11 C -0.05 -0.86 9.79 -39.26 -0.38 -1.24 16 12 C -0.14 -1.89 10.02 -39.68 -0.40 -2.28 16 13 C -0.09 -1.11 9.54 -39.12 -0.37 -1.48 16 14 C -0.15 -2.43 5.87 -105.00 -0.62 -3.05 16 15 C 0.57 8.29 7.77 -12.32 -0.10 8.20 16 16 O -0.53 -9.35 16.02 5.32 0.09 -9.27 16 17 N -0.72 -7.34 5.08 -53.21 -0.27 -7.61 16 18 C 0.16 1.25 2.88 -66.35 -0.19 1.06 16 19 H 0.11 0.90 7.60 -51.93 -0.39 0.51 16 20 C -0.13 -0.74 5.91 -25.61 -0.15 -0.89 16 21 C -0.43 -2.11 7.32 37.83 0.28 -1.84 16 22 S 1.22 7.60 14.66 -107.50 -1.58 6.02 16 23 O -0.85 -11.27 18.15 -35.23 -0.64 -11.91 16 24 C -0.44 -3.53 7.01 38.29 0.27 -3.27 16 25 C -0.02 -0.30 9.34 -38.92 -0.36 -0.66 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.13 2.14 8.06 -52.48 -0.42 1.71 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.03 6.40 -52.48 -0.34 0.69 16 30 H 0.40 3.11 6.61 -40.82 -0.27 2.84 16 31 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.14 2.91 7.65 -52.49 -0.40 2.51 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -38.02 341.87 -9.66 -47.68 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.36 Total: 2.70 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.03 Total: -18.86 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.50 Total: -32.83 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.55 Total: -21.17 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.71 Total: 16.05 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -3.66 Total: 1.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.02 -9.66 -47.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354723087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.478 kcal (2) G-P(sol) polarization free energy of solvation -38.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds