Wall clock time and date at job start Tue Mar 31 2020 15:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86791 * 120.00279 * 2 1 4 4 H 1.48496 * 109.47584 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47305 * 30.00580 * 3 2 1 6 6 H 1.48504 * 109.46709 * 150.00054 * 3 2 1 7 7 C 1.38729 * 119.99172 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00798 * 359.97438 * 7 2 1 9 9 S 1.76209 * 119.99594 * 179.97438 * 7 2 1 10 10 C 1.76201 * 99.99721 * 185.11780 * 9 7 2 11 11 C 1.39218 * 120.02019 * 265.48703 * 10 9 7 12 12 C 1.38135 * 120.20235 * 179.75018 * 11 10 9 13 13 C 1.38077 * 120.24466 * 0.55298 * 12 11 10 14 14 C 1.39635 * 120.03814 * 359.45010 * 13 12 11 15 15 C 1.47856 * 120.10542 * 180.29704 * 14 13 12 16 16 O 1.21555 * 120.00261 * 180.02562 * 15 14 13 17 17 N 1.34782 * 119.99977 * 359.97438 * 15 14 13 18 18 C 1.46495 * 119.99985 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.96719 * 325.21322 * 18 17 15 20 20 C 1.53859 * 109.97466 * 203.91751 * 18 17 15 21 21 C 1.54280 * 108.92752 * 193.38289 * 20 18 17 22 22 S 1.83102 * 104.64544 * 27.96126 * 21 20 18 23 23 O 1.42093 * 109.47178 * 111.47965 * 22 21 20 24 24 C 1.55139 * 109.97223 * 86.45767 * 18 17 15 25 25 C 1.38834 * 120.02086 * 85.51334 * 10 9 7 26 26 H 0.97003 * 119.99342 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.90089 * 0.04703 * 11 10 9 28 28 H 1.08002 * 119.87936 * 180.27934 * 12 11 10 29 29 H 1.08005 * 119.98528 * 179.72099 * 13 12 11 30 30 H 0.97002 * 119.99540 * 0.02562 * 17 15 14 31 31 H 1.08994 * 109.61563 * 313.31065 * 20 18 17 32 32 H 1.09001 * 109.60482 * 73.46860 * 20 18 17 33 33 H 1.08996 * 110.40427 * 269.16530 * 21 20 18 34 34 H 1.09001 * 110.49547 * 146.79880 * 21 20 18 35 35 H 1.08995 * 110.85816 * 279.65421 * 24 18 17 36 36 H 1.09001 * 110.85786 * 43.30258 * 24 18 17 37 37 H 1.07997 * 120.12205 * 359.95666 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4399 0.7001 7 6 2.0098 -1.2015 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2017 -0.0012 10 6 4.0775 -2.9300 -0.1565 11 6 4.2923 -3.7042 0.9804 12 6 4.5271 -5.0604 0.8634 13 6 4.5619 -5.6553 -0.3822 14 6 4.3479 -4.8884 -1.5293 15 6 4.3783 -5.5250 -2.8634 16 8 4.1923 -4.8555 -3.8608 17 7 4.6134 -6.8476 -2.9738 18 6 4.6429 -7.4785 -4.2956 19 1 3.9171 -6.9997 -4.9529 20 6 4.3288 -8.9794 -4.1688 21 6 4.6916 -9.6803 -5.4944 22 16 6.0332 -8.6579 -6.2067 23 8 7.2515 -9.3887 -6.1786 24 6 6.0651 -7.3654 -4.9050 25 6 4.1050 -3.5204 -1.4128 26 1 -0.4849 0.8401 0.0004 27 1 4.2704 -3.2440 1.9572 28 1 4.6886 -5.6569 1.7491 29 1 4.7504 -6.7152 -0.4691 30 1 4.7622 -7.3818 -2.1779 31 1 4.9146 -9.4084 -3.3559 32 1 3.2672 -9.1146 -3.9621 33 1 3.8310 -9.6975 -6.1631 34 1 5.0456 -10.6939 -5.3058 35 1 6.2231 -6.3791 -5.3413 36 1 6.8266 -7.5867 -4.1572 37 1 3.9385 -2.9223 -2.2965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354723087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:02 Heat of formation + Delta-G solvation = -79.081525 kcal Electronic energy + Delta-G solvation = -21711.802019 eV Core-core repulsion = 18284.380517 eV Total energy + Delta-G solvation = -3427.421503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32377 -39.36878 -37.58225 -36.84854 -34.71591 -34.17598 -32.14335 -31.90909 -29.93710 -27.91838 -26.15783 -24.60236 -23.73277 -22.06833 -21.68605 -20.07598 -19.03826 -18.45291 -17.79584 -17.20725 -17.13070 -16.77916 -16.63630 -16.06249 -15.85515 -15.48591 -15.13757 -14.97119 -14.75437 -14.71543 -14.46334 -14.11223 -13.95200 -13.60510 -13.29641 -13.16597 -13.07218 -13.04024 -12.69510 -12.30902 -12.26008 -11.92591 -11.85322 -11.30216 -11.22008 -11.12678 -10.92239 -10.31977 -9.95897 -9.76650 -9.29608 -9.14899 -8.53806 -6.28098 -0.23319 0.19198 0.68495 1.06370 1.31764 1.41298 1.44334 1.65516 1.76193 2.08446 2.21826 2.58604 2.77547 2.84496 2.95857 3.56654 3.65376 3.70510 3.89535 3.94942 3.99679 4.08627 4.17767 4.30052 4.42909 4.58619 4.69274 4.78233 4.87972 4.95534 5.03341 5.05588 5.16556 5.27596 5.35220 5.42197 5.69073 5.80297 6.10342 6.40457 6.88795 7.09567 8.59795 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.002513 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.572976 B =11138.122669 C =11524.387559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.041 3.959 3 Si 0.921 3.079 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.228 1.228 7 C -0.523 4.523 8 H 0.047 0.953 9 S -0.117 6.117 10 C -0.119 4.119 11 C -0.060 4.060 12 C -0.124 4.124 13 C -0.062 4.062 14 C -0.159 4.159 15 C 0.566 3.434 16 O -0.569 6.569 17 N -0.703 5.703 18 C 0.147 3.853 19 H 0.114 0.886 20 C -0.121 4.121 21 C -0.420 4.420 22 S 1.278 4.722 23 O -0.924 6.924 24 C -0.446 4.446 25 C -0.041 4.041 26 H 0.278 0.722 27 H 0.139 0.861 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.414 0.586 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 -20.645 -7.776 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.164 4.164 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.151 1.151 7 C -0.670 4.670 8 H 0.065 0.935 9 S 0.117 5.883 10 C -0.230 4.230 11 C -0.080 4.080 12 C -0.143 4.143 13 C -0.080 4.080 14 C -0.164 4.164 15 C 0.355 3.645 16 O -0.448 6.448 17 N -0.356 5.356 18 C 0.042 3.958 19 H 0.132 0.868 20 C -0.159 4.159 21 C -0.559 4.559 22 S 1.478 4.522 23 O -0.919 6.919 24 C -0.584 4.584 25 C -0.063 4.063 26 H 0.088 0.912 27 H 0.157 0.843 28 H 0.192 0.808 29 H 0.189 0.811 30 H 0.252 0.748 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.181 0.819 34 H 0.117 0.883 35 H 0.143 0.857 36 H 0.103 0.897 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.599 -19.290 -9.293 23.892 hybrid contribution -0.565 -0.878 2.254 2.484 sum 10.033 -20.168 -7.040 23.600 Atomic orbital electron populations 1.70033 1.07613 1.29201 1.48835 1.25716 0.95418 1.02585 0.92673 0.85776 0.80791 0.78856 0.80373 1.18589 1.18215 1.15108 1.22361 0.89758 0.96182 1.58655 0.93503 1.82657 1.07236 1.02509 1.95866 1.22080 1.05974 0.99034 0.95901 1.22082 0.93439 0.94730 0.97797 1.21548 1.00039 0.93600 0.99102 1.21746 0.94794 1.00757 0.90728 1.19988 1.08449 0.93786 0.94225 1.18276 0.75473 0.82621 0.88180 1.90755 1.50708 1.63984 1.39394 1.45702 1.72257 1.07416 1.10240 1.21873 0.95101 0.94037 0.84822 0.86761 1.22179 1.05254 0.90958 0.97541 1.27867 1.14680 1.08446 1.04905 1.70415 0.86941 0.91161 1.03706 1.93010 1.43705 1.71936 1.83285 1.28740 1.01446 1.14795 1.13441 1.21671 0.93429 0.94452 0.96711 0.91245 0.84333 0.80791 0.81081 0.74772 0.90640 0.87716 0.81944 0.88335 0.85727 0.89699 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.60 13.97 21.64 0.30 -56.29 16 2 C 0.04 2.42 5.50 84.84 0.47 2.89 16 3 Si 0.92 43.68 27.73 68.60 1.90 45.58 16 4 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.23 -10.27 6.74 99.48 0.67 -9.60 16 7 C -0.52 -31.06 10.01 67.94 0.68 -30.38 16 8 H 0.05 3.08 8.02 -2.91 -0.02 3.06 16 9 S -0.12 -5.75 19.38 -56.49 -1.09 -6.84 16 10 C -0.12 -4.95 5.45 22.65 0.12 -4.83 16 11 C -0.06 -1.96 9.79 22.48 0.22 -1.74 16 12 C -0.12 -2.84 10.02 22.21 0.22 -2.61 16 13 C -0.06 -1.33 9.54 22.57 0.22 -1.11 16 14 C -0.16 -4.84 5.87 -20.11 -0.12 -4.96 16 15 C 0.57 15.96 7.77 86.79 0.67 16.63 16 16 O -0.57 -20.48 16.02 -3.89 -0.06 -20.54 16 17 N -0.70 -12.30 5.08 -440.55 -2.24 -14.54 16 18 C 0.15 2.01 2.88 46.01 0.13 2.14 16 19 H 0.11 1.60 7.60 -2.39 -0.02 1.58 16 20 C -0.12 -0.96 5.91 31.32 0.18 -0.77 16 21 C -0.42 -2.64 7.32 72.42 0.53 -2.11 16 22 S 1.28 13.95 14.66 -56.49 -0.83 13.12 16 23 O -0.92 -23.90 18.15 -148.98 -2.70 -26.60 16 24 C -0.45 -6.59 7.01 72.72 0.51 -6.08 16 25 C -0.04 -1.63 9.34 22.70 0.21 -1.42 16 26 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 28 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.17 1.85 6.40 -2.91 -0.02 1.83 16 30 H 0.41 4.60 6.61 -92.71 -0.61 3.99 16 31 H 0.07 0.59 8.10 -2.39 -0.02 0.57 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 4.97 7.65 -2.91 -0.02 4.95 16 Total: -1.00 -89.65 341.87 -0.22 -89.87 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.45 Total: 10.60 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 4.05 Total: -34.36 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.94 Total: -70.83 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -2.77 Total: -47.15 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.90 Total: 45.58 kcal Atomic # 16 Polarization: 8.20 SS G_CDS: -1.92 Total: 6.28 kcal Total: -89.65 -0.22 -89.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354723087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.788 kcal (2) G-P(sol) polarization free energy of solvation -89.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds