Wall clock time and date at job start Tue Mar 31 2020 13:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47151 * 2 1 4 4 C 1.50705 * 109.46611 * 119.99455 * 2 1 3 5 5 O 1.21279 * 119.99879 * 115.58647 * 4 2 1 6 6 N 1.34777 * 120.00241 * 295.30268 * 4 2 1 7 7 C 1.46494 * 119.99993 * 180.02562 * 6 4 2 8 8 C 1.50705 * 109.47033 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00030 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99852 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00210 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99789 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47357 * 60.00405 * 12 10 8 14 14 H 1.48504 * 109.46950 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47171 * 300.00022 * 12 10 8 16 16 C 1.50695 * 109.47546 * 239.99486 * 2 1 3 17 17 C 1.38242 * 119.99043 * 125.66655 * 16 2 1 18 18 C 1.38213 * 120.01015 * 179.76893 * 17 16 2 19 19 C 1.38330 * 119.98942 * 0.51015 * 18 17 16 20 20 Br 1.89101 * 120.01114 * 179.72486 * 19 18 17 21 21 C 1.38327 * 119.97911 * 359.74428 * 19 18 17 22 22 C 1.38213 * 119.98861 * 359.97438 * 21 19 18 23 23 H 1.08990 * 109.47815 * 300.00519 * 1 2 3 24 24 H 1.09008 * 109.46701 * 60.00638 * 1 2 3 25 25 H 1.09003 * 109.47221 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47340 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47104 * 299.99755 * 3 2 1 28 28 H 1.09000 * 109.47314 * 59.98970 * 3 2 1 29 29 H 0.96999 * 119.99430 * 0.02562 * 6 4 2 30 30 H 1.09000 * 109.47675 * 300.00599 * 7 6 4 31 31 H 1.09005 * 109.47337 * 60.00431 * 7 6 4 32 32 H 0.96993 * 119.99945 * 179.97438 * 11 10 8 33 33 H 1.08000 * 119.99283 * 0.02562 * 17 16 2 34 34 H 1.08004 * 120.00589 * 180.23241 * 18 17 16 35 35 H 1.07998 * 119.99959 * 179.97438 * 21 19 18 36 36 H 1.08001 * 119.99361 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.6620 -1.7410 1.1212 6 7 1.7865 -0.1972 2.4524 7 6 2.2752 -0.8875 3.6486 8 6 1.8694 -0.1133 4.8763 9 1 1.3037 0.8011 4.7755 10 6 2.2195 -0.5731 6.1281 11 7 2.9080 -1.6869 6.2508 12 14 1.7171 0.3869 7.6498 13 1 0.2365 0.4870 7.7056 14 1 2.2124 -0.3129 8.8624 15 1 2.3036 1.7499 7.5912 16 6 2.0324 -0.7105 -1.2303 17 6 2.9210 -0.0775 -2.0794 18 6 3.3857 -0.7305 -3.2054 19 6 2.9535 -2.0137 -3.4883 20 35 3.5830 -2.9048 -5.0328 21 6 2.0603 -2.6447 -2.6412 22 6 1.6006 -1.9931 -1.5124 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.2860 0.6291 2.5396 30 1 1.8452 -1.8882 3.6919 31 1 3.3620 -0.9605 3.6074 32 1 3.1545 -2.0101 7.1314 33 1 3.2552 0.9259 -1.8606 34 1 4.0828 -0.2373 -3.8666 35 1 1.7223 -3.6464 -2.8620 36 1 0.9029 -2.4855 -0.8512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427617072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:30 Heat of formation + Delta-G solvation = -44.058255 kcal Electronic energy + Delta-G solvation = -19324.114755 eV Core-core repulsion = 16238.987712 eV Total energy + Delta-G solvation = -3085.127043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59749 -39.72188 -36.38441 -36.15756 -34.31193 -32.58919 -32.18048 -29.80693 -29.02280 -28.34589 -25.44406 -24.28437 -23.47157 -22.42387 -20.60440 -18.86675 -17.98130 -17.40055 -16.97931 -16.46416 -16.28642 -15.93239 -15.59051 -14.99886 -14.82111 -14.54447 -14.19533 -14.06494 -14.01751 -13.33731 -13.23712 -13.06046 -12.93969 -12.73141 -12.67916 -12.59379 -12.23111 -11.96896 -11.78607 -11.66478 -11.50138 -11.25729 -10.79049 -10.59575 -9.96451 -9.81678 -9.55349 -8.28969 -6.45828 0.07148 0.36313 0.62014 1.43312 1.47181 1.55350 1.76666 2.29231 2.45832 2.81979 3.05968 3.44567 3.70362 3.92136 3.96645 4.06940 4.07930 4.38257 4.47710 4.69075 4.75646 4.80931 4.84424 4.88767 4.98992 5.11570 5.17621 5.18868 5.23897 5.27740 5.32537 5.48693 5.58971 5.69120 5.82953 5.85501 6.65154 6.90746 7.23550 7.48873 8.82967 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.002604 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.664955 B =10751.036937 C =11184.223037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 C -0.143 4.143 4 C 0.504 3.496 5 O -0.595 6.595 6 N -0.702 5.702 7 C 0.268 3.732 8 C -0.555 4.555 9 H 0.085 0.915 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.983 3.017 13 H -0.261 1.261 14 H -0.287 1.287 15 H -0.261 1.261 16 C -0.052 4.052 17 C -0.112 4.112 18 C -0.095 4.095 19 C -0.102 4.102 20 Br -0.050 7.050 21 C -0.101 4.101 22 C -0.099 4.099 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.407 0.593 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 6.006 -23.194 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.041 4.041 3 C -0.201 4.201 4 C 0.291 3.709 5 O -0.476 6.476 6 N -0.351 5.351 7 C 0.146 3.854 8 C -0.593 4.593 9 H 0.103 0.897 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.806 3.194 13 H -0.186 1.186 14 H -0.213 1.213 15 H -0.186 1.186 16 C -0.052 4.052 17 C -0.130 4.130 18 C -0.114 4.114 19 C -0.182 4.182 20 Br 0.036 6.964 21 C -0.121 4.121 22 C -0.118 4.118 23 H 0.095 0.905 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.095 0.905 29 H 0.243 0.757 30 H 0.003 0.997 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.171 0.829 35 H 0.157 0.843 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.920 4.824 -23.698 24.360 hybrid contribution -0.182 0.015 1.537 1.548 sum -3.103 4.839 -22.161 22.895 Atomic orbital electron populations 1.21906 0.89733 1.02911 1.04684 1.19790 0.98833 0.96974 0.88465 1.22032 1.01593 0.91377 1.05053 1.21207 0.79298 0.84845 0.85570 1.90657 1.42870 1.26646 1.87441 1.46145 1.55755 1.27676 1.05557 1.18508 0.92539 0.91829 0.82557 1.21587 1.36827 1.10070 0.90833 0.89698 1.26064 0.94408 0.95947 1.03143 1.70135 1.38713 1.22920 1.25272 0.85228 0.79126 0.78438 0.76572 1.18559 1.21269 1.18557 1.19668 0.96624 0.94404 0.94545 1.21442 0.96205 1.01675 0.93710 1.21335 0.99449 0.92769 0.97875 1.21917 1.02962 0.97243 0.96051 1.96671 1.87756 1.78007 1.34010 1.21184 0.96613 1.00376 0.93892 1.21026 1.00108 0.94613 0.96040 0.90509 0.88518 0.93011 0.92290 0.87835 0.90545 0.75666 0.99656 0.99712 0.92289 0.82333 0.82901 0.84323 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.17 71.98 0.59 -2.25 16 2 C -0.04 -0.98 0.72 -53.68 -0.04 -1.02 16 3 C -0.14 -2.78 7.00 71.98 0.50 -2.28 16 4 C 0.50 19.78 6.40 87.66 0.56 20.34 16 5 O -0.59 -29.37 15.32 -3.03 -0.05 -29.42 16 6 N -0.70 -28.95 5.37 -466.78 -2.51 -31.46 16 7 C 0.27 14.63 5.43 85.64 0.46 15.09 16 8 C -0.56 -29.79 9.28 25.60 0.24 -29.55 16 9 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 10 C 0.00 0.22 5.46 84.65 0.46 0.68 16 11 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 12 Si 0.98 41.77 29.54 68.60 2.03 43.79 16 13 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 14 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 C -0.05 -1.38 4.33 -19.86 -0.09 -1.47 16 17 C -0.11 -2.50 8.99 22.26 0.20 -2.30 16 18 C -0.09 -2.04 9.79 22.29 0.22 -1.82 16 19 C -0.10 -2.43 6.22 22.31 0.14 -2.29 16 20 Br -0.05 -1.02 33.70 -20.37 -0.69 -1.70 16 21 C -0.10 -2.60 9.79 22.28 0.22 -2.38 16 22 C -0.10 -2.82 8.15 22.26 0.18 -2.64 16 23 H 0.08 1.49 7.90 -2.39 -0.02 1.47 16 24 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.05 1.21 7.08 -2.39 -0.02 1.19 16 26 H 0.06 1.24 7.25 -2.39 -0.02 1.22 16 27 H 0.10 1.32 7.78 -2.38 -0.02 1.31 16 28 H 0.08 1.38 7.31 -2.39 -0.02 1.36 16 29 H 0.41 13.74 7.22 -92.71 -0.67 13.08 16 30 H -0.01 -0.90 8.14 -2.39 -0.02 -0.91 16 31 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.16 2.69 5.91 -2.91 -0.02 2.67 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.12 3.51 7.23 -2.91 -0.02 3.49 16 Total: -1.00 -71.26 322.39 3.15 -68.11 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.43 Total: 18.42 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 3.65 Total: -11.88 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -2.22 Total: -87.32 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.05 Total: -29.42 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.69 Total: -1.70 kcal Total: -71.26 3.15 -68.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427617072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.053 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds