Wall clock time and date at job start Tue Mar 31 2020 14:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00119 * 2 1 4 4 N 1.46892 * 109.47370 * 125.77713 * 3 2 1 5 5 C 1.46894 * 111.00500 * 300.67486 * 4 3 2 6 6 C 1.50699 * 109.47184 * 288.37647 * 5 4 3 7 7 H 1.08003 * 120.00373 * 4.86895 * 6 5 4 8 8 C 1.37880 * 120.00406 * 184.87882 * 6 5 4 9 9 N 1.31512 * 120.00293 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99458 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47307 * 90.00402 * 10 8 6 12 12 H 1.48500 * 109.46860 * 209.99978 * 10 8 6 13 13 H 1.48501 * 109.47152 * 329.99934 * 10 8 6 14 14 C 1.46901 * 110.99892 * 64.63154 * 4 3 2 15 15 C 1.50701 * 109.47276 * 71.12909 * 14 4 3 16 16 C 1.38161 * 119.97642 * 256.68488 * 15 14 4 17 17 C 1.38707 * 119.95213 * 179.75511 * 16 15 14 18 18 O 1.35916 * 120.04383 * 180.22895 * 17 16 15 19 19 C 1.38749 * 119.90576 * 0.53598 * 17 16 15 20 20 C 1.38112 * 119.95595 * 359.71086 * 19 17 16 21 21 C 1.38319 * 119.97381 * 76.95516 * 15 14 4 22 22 Br 1.89093 * 119.95954 * 0.02562 * 21 15 14 23 23 H 1.08001 * 120.00251 * 359.97438 * 1 2 3 24 24 H 1.08005 * 119.99643 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00251 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46669 * 5.77686 * 3 2 1 27 27 H 1.09000 * 109.47255 * 245.78153 * 3 2 1 28 28 H 1.09009 * 109.47101 * 48.36570 * 5 4 3 29 29 H 1.08994 * 109.47783 * 168.36627 * 5 4 3 30 30 H 0.97001 * 119.99918 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47213 * 191.12971 * 14 4 3 32 32 H 1.09004 * 109.46760 * 311.12822 * 14 4 3 33 33 H 1.07999 * 120.02421 * 359.97267 * 16 15 14 34 34 H 0.96702 * 113.99378 * 270.30897 * 18 17 16 35 35 H 1.08008 * 120.01993 * 179.68938 * 19 17 16 36 36 H 1.08000 * 119.97885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0095 1.3243 1.1236 5 6 2.3082 1.1703 2.4051 6 6 1.5450 2.4322 2.7149 7 1 1.5131 3.2351 1.9932 8 6 0.8874 2.5621 3.9198 9 7 0.2217 3.6635 4.1903 10 14 0.9421 1.1733 5.1679 11 1 2.1085 1.3618 6.0675 12 1 -0.3076 1.1792 5.9701 13 1 1.0688 -0.1252 4.4585 14 6 4.0414 0.2915 0.9607 15 6 4.9735 0.6844 -0.1564 16 6 4.8661 0.0750 -1.3917 17 6 5.7209 0.4407 -2.4210 18 8 5.6138 -0.1544 -3.6383 19 6 6.6896 1.4101 -2.2044 20 6 6.7970 2.0132 -0.9665 21 6 5.9396 1.6510 0.0574 22 35 6.0899 2.4774 1.7515 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3596 2.1310 0.1034 27 1 2.6103 1.4090 -0.9372 28 1 1.6140 0.3324 2.3409 29 1 3.0339 0.9811 3.1960 30 1 -0.2406 3.7549 5.0382 31 1 4.6064 0.1930 1.8875 32 1 3.5678 -0.6605 0.7208 33 1 4.1147 -0.6830 -1.5568 34 1 6.1517 -0.9522 -3.7347 35 1 7.3595 1.6926 -3.0031 36 1 7.5511 2.7675 -0.7973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430097903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:12 Heat of formation + Delta-G solvation = 18.617387 kcal Electronic energy + Delta-G solvation = -19699.749905 eV Core-core repulsion = 16617.340682 eV Total energy + Delta-G solvation = -3082.409223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96891 -37.82207 -36.53334 -32.84741 -32.63938 -31.49661 -31.16614 -28.56269 -27.67693 -26.27805 -23.79837 -22.55224 -21.38481 -20.78707 -18.98332 -17.95820 -16.67663 -16.20007 -16.17328 -15.22526 -15.18288 -14.70999 -14.18433 -13.96808 -13.90454 -13.33469 -12.76193 -12.69645 -12.31056 -12.24338 -11.74658 -11.49060 -11.27706 -11.05914 -10.80945 -10.74531 -10.49480 -10.38692 -10.36963 -9.88405 -9.65892 -9.28204 -9.00106 -8.77577 -8.50228 -8.35304 -7.34834 -5.99411 -3.94697 1.00511 1.22079 1.98084 2.78443 3.30740 3.38232 3.40018 3.43030 4.02146 4.46382 4.70008 4.78751 4.97828 5.13250 5.33195 5.36240 5.44661 5.46524 5.59422 5.72434 5.84381 5.96776 6.04001 6.10506 6.26007 6.33258 6.38811 6.59497 6.62970 6.84133 7.01867 7.09163 7.26531 7.47214 7.64064 7.91689 8.03222 8.70753 9.10571 9.62943 11.14034 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.005704 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.278983 B = 4907.718021 C = 6343.074179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.184 4.184 3 C 0.087 3.913 4 N -0.503 5.503 5 C 0.164 3.836 6 C -0.496 4.496 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.902 5.902 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.075 3.925 15 C -0.021 4.021 16 C -0.136 4.136 17 C 0.113 3.887 18 O -0.498 6.498 19 C -0.148 4.148 20 C -0.080 4.080 21 C -0.078 4.078 22 Br -0.026 7.026 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.064 0.936 28 H -0.005 1.005 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.132 0.868 34 H 0.389 0.611 35 H 0.132 0.868 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.229 -8.296 -11.305 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.204 4.204 3 C -0.041 4.041 4 N -0.225 5.225 5 C 0.038 3.962 6 C -0.534 4.534 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.541 5.541 10 Si 0.696 3.304 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.053 4.053 15 C -0.024 4.024 16 C -0.156 4.156 17 C 0.068 3.932 18 O -0.308 6.308 19 C -0.168 4.168 20 C -0.100 4.100 21 C -0.158 4.158 22 Br 0.060 6.940 23 H 0.119 0.881 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.013 0.987 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.150 0.850 34 H 0.244 0.756 35 H 0.150 0.850 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.024 -6.957 -10.595 18.903 hybrid contribution -0.220 -2.108 0.448 2.166 sum 13.804 -9.065 -10.147 19.383 Atomic orbital electron populations 1.23764 0.96042 1.01367 1.00467 1.23555 0.96771 0.99737 1.00357 1.21316 0.94468 0.94579 0.93705 1.62256 1.12813 1.43866 1.03530 1.20199 0.92725 0.97522 0.85720 1.20946 1.28988 1.00834 1.02655 0.90211 1.24838 0.95291 0.95243 0.97789 1.69887 1.34179 1.26118 1.23962 0.86960 0.77620 0.83609 0.82173 1.20264 1.21345 1.19338 1.21244 0.93702 0.94321 0.96021 1.19749 0.94103 0.93504 0.95046 1.21318 1.00703 1.01980 0.91626 1.18468 0.95138 0.95128 0.84462 1.84843 1.70644 1.44950 1.30370 1.21313 0.99250 0.98964 0.97238 1.20980 0.98295 0.99133 0.91572 1.21809 0.99997 0.99976 0.94061 1.96795 1.97550 1.79179 1.20490 0.88116 0.89654 0.88725 0.89176 0.91809 0.98692 0.96021 0.92820 0.89538 0.94064 0.85030 0.75561 0.85036 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 14.32 29.02 0.42 -2.57 16 2 C -0.18 -3.15 7.44 -36.02 -0.27 -3.42 16 3 C 0.09 1.63 5.52 -4.98 -0.03 1.61 16 4 N -0.50 -10.07 4.49 -238.97 -1.07 -11.14 16 5 C 0.16 3.87 3.65 -4.98 -0.02 3.85 16 6 C -0.50 -13.82 9.23 -34.44 -0.32 -14.14 16 7 H 0.08 2.44 7.56 -52.48 -0.40 2.05 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 10 Si 0.87 21.57 27.37 -169.99 -4.65 16.91 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.27 -6.43 6.68 56.52 0.38 -6.05 16 14 C 0.08 1.25 4.26 -4.97 -0.02 1.23 16 15 C -0.02 -0.32 4.68 -104.62 -0.49 -0.81 16 16 C -0.14 -1.76 8.87 -39.44 -0.35 -2.11 16 17 C 0.11 1.32 6.70 -39.22 -0.26 1.06 16 18 O -0.50 -5.01 13.50 -19.48 -0.26 -5.27 16 19 C -0.15 -1.64 9.99 -39.44 -0.39 -2.04 16 20 C -0.08 -0.97 9.78 -39.58 -0.39 -1.36 16 21 C -0.08 -1.14 6.22 -39.50 -0.25 -1.39 16 22 Br -0.03 -0.42 31.97 -68.01 -2.17 -2.60 16 23 H 0.10 1.77 7.84 -52.49 -0.41 1.35 16 24 H 0.09 1.25 8.06 -52.48 -0.42 0.83 16 25 H 0.09 1.47 6.70 -52.49 -0.35 1.12 16 26 H 0.09 1.91 6.83 -51.93 -0.35 1.55 16 27 H 0.06 1.11 6.75 -51.93 -0.35 0.76 16 28 H 0.00 -0.11 6.09 -51.92 -0.32 -0.43 16 29 H 0.02 0.52 6.90 -51.93 -0.36 0.16 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.09 1.47 6.90 -51.93 -0.36 1.11 16 32 H 0.04 0.64 6.02 -51.93 -0.31 0.33 16 33 H 0.13 1.58 8.01 -52.49 -0.42 1.16 16 34 H 0.39 1.89 9.06 45.56 0.41 2.30 16 35 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -31.56 319.46 -8.68 -40.25 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.65 Total: 2.06 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.46 Total: -18.18 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.30 Total: -37.98 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.26 Total: -5.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.65 Total: 16.91 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.17 Total: -2.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.56 -8.68 -40.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430097903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.865 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds