Wall clock time and date at job start Tue Mar 31 2020 13:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37983 * 120.06742 * 2 1 4 4 C 1.38326 * 120.15604 * 180.02562 * 3 2 1 5 5 C 1.38470 * 120.28371 * 0.02562 * 4 3 2 6 6 Br 1.89100 * 119.93580 * 180.02562 * 5 4 3 7 7 C 1.38025 * 120.12426 * 0.27953 * 5 4 3 8 8 C 1.50699 * 120.08183 * 179.69831 * 7 5 4 9 9 C 1.39560 * 120.06375 * 180.02562 * 2 1 3 10 10 C 1.47854 * 120.13370 * 359.97438 * 9 2 1 11 11 O 1.21560 * 119.99768 * 90.00637 * 10 9 2 12 12 N 1.34773 * 120.00270 * 269.99628 * 10 9 2 13 13 C 1.46498 * 120.00045 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00073 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.47157 * 90.00334 * 14 12 10 16 16 H 1.08003 * 119.99737 * 0.02562 * 15 14 12 17 17 C 1.37882 * 120.00218 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99875 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99988 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47000 * 89.99754 * 19 17 15 21 21 H 1.48495 * 109.47118 * 209.99817 * 19 17 15 22 22 H 1.48506 * 109.46967 * 330.00035 * 19 17 15 23 23 H 1.08996 * 109.46896 * 89.99975 * 1 2 3 24 24 H 1.08997 * 109.47771 * 210.00718 * 1 2 3 25 25 H 1.09005 * 109.46928 * 330.00351 * 1 2 3 26 26 H 1.07999 * 119.92090 * 0.02562 * 3 2 1 27 27 H 1.07996 * 119.85537 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46854 * 89.99870 * 8 7 5 29 29 H 1.08990 * 109.47758 * 210.00089 * 8 7 5 30 30 H 1.08997 * 109.46593 * 330.00701 * 8 7 5 31 31 H 1.08997 * 109.46989 * 89.99652 * 13 12 10 32 32 H 1.09000 * 109.47231 * 209.99356 * 13 12 10 33 33 H 1.08996 * 109.46899 * 329.99591 * 13 12 10 34 34 H 1.09001 * 109.47532 * 210.00481 * 14 12 10 35 35 H 1.09007 * 109.47207 * 330.00605 * 14 12 10 36 36 H 0.97000 * 119.99895 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1942 0.0000 4 6 3.5815 1.1963 -0.0005 5 6 4.2817 0.0016 -0.0016 6 35 6.1726 0.0160 -0.0016 7 6 3.6019 -1.1996 -0.0080 8 6 4.3649 -2.4992 -0.0160 9 6 2.2061 -1.2079 -0.0005 10 6 1.4712 -2.4908 -0.0005 11 8 1.1689 -3.0180 -1.0533 12 7 1.1368 -3.0759 1.1666 13 6 1.5009 -2.4404 2.4354 14 6 0.4092 -4.3474 1.1665 15 6 1.3929 -5.4891 1.1662 16 1 2.4539 -5.2877 1.1665 17 6 0.9383 -6.7909 1.1666 18 7 1.7968 -7.7871 1.1668 19 14 -0.8969 -7.1393 1.1669 20 1 -1.3834 -7.2320 -0.2331 21 1 -1.1570 -8.4226 1.8673 22 1 -1.6093 -6.0401 1.8667 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6581 2.1293 0.0004 27 1 4.1177 2.1337 -0.0001 28 1 4.5496 -2.8184 1.0097 29 1 3.7811 -3.2601 -0.5337 30 1 5.3159 -2.3589 -0.5297 31 1 0.6993 -1.7724 2.7503 32 1 1.6544 -3.2070 3.1949 33 1 2.4199 -1.8691 2.3049 34 1 -0.2171 -4.4078 2.0566 35 1 -0.2174 -4.4075 0.2766 36 1 1.4770 -8.7029 1.1675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521342516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:38 Heat of formation + Delta-G solvation = -10.250758 kcal Electronic energy + Delta-G solvation = -20027.245291 eV Core-core repulsion = 16943.584251 eV Total energy + Delta-G solvation = -3083.661040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33661 -38.17619 -34.96278 -34.02829 -32.74039 -32.14870 -30.50257 -28.72531 -27.44254 -26.28779 -25.92739 -23.68862 -21.75290 -20.65998 -18.81776 -17.02930 -16.83576 -16.21738 -15.80802 -15.40117 -14.48012 -14.14974 -14.05686 -13.69933 -13.23849 -13.13350 -13.05712 -12.71432 -12.41925 -12.38551 -12.04584 -11.95649 -11.88653 -11.54234 -11.47245 -11.23075 -10.96007 -10.70838 -10.55268 -10.19855 -10.15593 -9.59164 -9.24919 -8.76185 -8.61211 -8.55544 -7.79349 -6.11190 -4.10417 0.95016 1.12437 1.55693 3.17039 3.27098 3.32747 3.34634 3.37947 3.79036 4.37152 4.63071 4.70758 4.71857 4.97008 5.13419 5.22187 5.45024 5.46109 5.58633 5.60791 5.64918 5.72015 5.82145 5.87018 5.97104 6.06835 6.14731 6.25518 6.38096 6.44344 6.61404 6.70408 6.88245 7.24381 7.56638 8.11956 8.42451 8.81095 8.92584 9.48585 11.01990 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.004275 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.247327 B = 6547.934372 C = 7598.522912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.037 4.037 3 C -0.126 4.126 4 C -0.077 4.077 5 C -0.103 4.103 6 Br -0.050 7.050 7 C -0.015 4.015 8 C -0.134 4.134 9 C -0.106 4.106 10 C 0.558 3.442 11 O -0.529 6.529 12 N -0.587 5.587 13 C 0.083 3.917 14 C 0.214 3.786 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.037 0.963 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 20.915 0.984 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.038 4.038 3 C -0.145 4.145 4 C -0.096 4.096 5 C -0.182 4.182 6 Br 0.035 6.965 7 C -0.018 4.018 8 C -0.190 4.190 9 C -0.110 4.110 10 C 0.344 3.656 11 O -0.406 6.406 12 N -0.318 5.318 13 C -0.061 4.061 14 C 0.094 3.906 15 C -0.568 4.568 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.191 1.191 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.115 20.397 0.452 21.034 hybrid contribution -1.179 -0.306 0.073 1.220 sum 3.937 20.091 0.526 20.480 Atomic orbital electron populations 1.20906 0.90390 1.03304 1.03275 1.20020 0.96479 0.91618 0.95649 1.20886 0.93341 0.97552 1.02740 1.21111 0.94206 0.96530 0.97794 1.21551 0.90151 0.95445 1.11065 1.96652 1.02989 1.99071 1.97745 1.19823 0.92207 0.94910 0.94815 1.21114 1.00406 0.93561 1.03944 1.19916 0.92822 0.94316 1.03960 1.17978 0.79589 0.83570 0.84498 1.90794 1.54488 1.64388 1.30948 1.47832 1.55916 1.23433 1.04625 1.21668 0.99345 0.98106 0.86939 1.19730 0.92810 0.80516 0.97530 1.21297 0.94694 0.89237 1.51607 0.90599 1.24844 0.97655 0.95999 0.94387 1.69890 1.34088 0.99111 1.50300 0.86871 0.86011 0.78038 0.78900 1.19873 1.21037 1.19061 0.90235 0.90914 0.90881 0.84851 0.84938 0.89737 0.89685 0.90306 0.93544 0.90289 0.92205 0.94971 0.94459 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.62 36.00 0.35 -1.12 16 2 C -0.04 -0.50 5.91 -104.23 -0.62 -1.11 16 3 C -0.13 -1.38 9.69 -39.64 -0.38 -1.76 16 4 C -0.08 -0.85 9.78 -39.46 -0.39 -1.24 16 5 C -0.10 -1.36 6.21 -39.57 -0.25 -1.61 16 6 Br -0.05 -0.59 31.77 -68.01 -2.16 -2.75 16 7 C -0.02 -0.24 5.50 -104.20 -0.57 -0.81 16 8 C -0.13 -2.20 9.15 36.00 0.33 -1.87 16 9 C -0.11 -1.77 3.91 -104.97 -0.41 -2.18 16 10 C 0.56 11.53 4.05 -12.33 -0.05 11.48 16 11 O -0.53 -13.20 16.68 5.31 0.09 -13.11 16 12 N -0.59 -11.98 2.86 -184.08 -0.53 -12.51 16 13 C 0.08 1.32 10.26 59.85 0.61 1.94 16 14 C 0.21 5.14 4.23 -5.20 -0.02 5.12 16 15 C -0.53 -14.91 9.94 -34.44 -0.34 -15.26 16 16 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 19 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 1.00 7.08 -51.93 -0.37 0.63 16 25 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.08 1.68 7.09 -51.93 -0.37 1.32 16 30 H 0.08 1.16 6.64 -51.93 -0.34 0.81 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 34 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 35 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -32.61 321.62 -8.17 -40.78 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.69 Total: -0.94 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.84 Total: -6.40 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.25 Total: -39.00 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.16 Total: -2.75 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.61 -8.17 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521342516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.531 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds