Wall clock time and date at job start Tue Mar 31 2020 13:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37983 * 120.06742 * 2 1 4 4 C 1.38326 * 120.15604 * 180.02562 * 3 2 1 5 5 C 1.38470 * 120.28371 * 0.02562 * 4 3 2 6 6 Br 1.89100 * 119.93580 * 180.02562 * 5 4 3 7 7 C 1.38025 * 120.12426 * 0.27953 * 5 4 3 8 8 C 1.50699 * 120.08183 * 179.69831 * 7 5 4 9 9 C 1.39560 * 120.06375 * 180.02562 * 2 1 3 10 10 C 1.47854 * 120.13370 * 359.97438 * 9 2 1 11 11 O 1.21560 * 119.99768 * 90.00637 * 10 9 2 12 12 N 1.34773 * 120.00270 * 269.99628 * 10 9 2 13 13 C 1.46498 * 120.00045 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00073 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.47157 * 90.00334 * 14 12 10 16 16 H 1.08003 * 119.99737 * 0.02562 * 15 14 12 17 17 C 1.37882 * 120.00218 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99875 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99988 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47000 * 89.99754 * 19 17 15 21 21 H 1.48495 * 109.47118 * 209.99817 * 19 17 15 22 22 H 1.48506 * 109.46967 * 330.00035 * 19 17 15 23 23 H 1.08996 * 109.46896 * 89.99975 * 1 2 3 24 24 H 1.08997 * 109.47771 * 210.00718 * 1 2 3 25 25 H 1.09005 * 109.46928 * 330.00351 * 1 2 3 26 26 H 1.07999 * 119.92090 * 0.02562 * 3 2 1 27 27 H 1.07996 * 119.85537 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46854 * 89.99870 * 8 7 5 29 29 H 1.08990 * 109.47758 * 210.00089 * 8 7 5 30 30 H 1.08997 * 109.46593 * 330.00701 * 8 7 5 31 31 H 1.08997 * 109.46989 * 89.99652 * 13 12 10 32 32 H 1.09000 * 109.47231 * 209.99356 * 13 12 10 33 33 H 1.08996 * 109.46899 * 329.99591 * 13 12 10 34 34 H 1.09001 * 109.47532 * 210.00481 * 14 12 10 35 35 H 1.09007 * 109.47207 * 330.00605 * 14 12 10 36 36 H 0.97000 * 119.99895 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1942 0.0000 4 6 3.5815 1.1963 -0.0005 5 6 4.2817 0.0016 -0.0016 6 35 6.1726 0.0160 -0.0016 7 6 3.6019 -1.1996 -0.0080 8 6 4.3649 -2.4992 -0.0160 9 6 2.2061 -1.2079 -0.0005 10 6 1.4712 -2.4908 -0.0005 11 8 1.1689 -3.0180 -1.0533 12 7 1.1368 -3.0759 1.1666 13 6 1.5009 -2.4404 2.4354 14 6 0.4092 -4.3474 1.1665 15 6 1.3929 -5.4891 1.1662 16 1 2.4539 -5.2877 1.1665 17 6 0.9383 -6.7909 1.1666 18 7 1.7968 -7.7871 1.1668 19 14 -0.8969 -7.1393 1.1669 20 1 -1.3834 -7.2320 -0.2331 21 1 -1.1570 -8.4226 1.8673 22 1 -1.6093 -6.0401 1.8667 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6581 2.1293 0.0004 27 1 4.1177 2.1337 -0.0001 28 1 4.5496 -2.8184 1.0097 29 1 3.7811 -3.2601 -0.5337 30 1 5.3159 -2.3589 -0.5297 31 1 0.6993 -1.7724 2.7503 32 1 1.6544 -3.2070 3.1949 33 1 2.4199 -1.8691 2.3049 34 1 -0.2171 -4.4078 2.0566 35 1 -0.2174 -4.4075 0.2766 36 1 1.4770 -8.7029 1.1675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521342516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:38 Heat of formation + Delta-G solvation = -30.585173 kcal Electronic energy + Delta-G solvation = -20028.127057 eV Core-core repulsion = 16943.584251 eV Total energy + Delta-G solvation = -3084.542806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.63597 -39.56550 -36.70300 -35.08493 -34.73153 -33.44611 -31.47412 -30.57555 -28.73810 -27.44986 -27.25338 -25.29463 -23.32174 -21.71859 -20.29781 -19.16591 -18.24627 -17.46643 -17.41974 -16.57186 -16.21861 -15.51960 -15.22636 -15.22230 -14.68434 -14.34357 -14.30329 -14.11315 -13.86425 -13.77790 -13.69476 -13.28083 -13.11288 -12.99555 -12.87224 -12.56421 -12.47304 -12.26484 -12.05902 -11.75809 -11.65440 -11.18138 -10.86127 -10.83666 -9.88041 -9.56304 -9.50602 -8.34412 -6.39982 -0.07761 0.07155 0.55507 1.32344 1.36625 1.44749 1.60254 2.17943 2.30510 2.45010 2.99785 3.43709 3.60596 3.75857 3.87134 4.18704 4.29188 4.35028 4.48199 4.48590 4.55558 4.57703 4.65866 4.73345 4.77227 4.85415 4.89381 5.02093 5.07145 5.12762 5.19099 5.39921 5.42870 5.52559 5.71566 6.21154 6.53276 6.61389 7.15009 7.28758 8.82427 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.004275 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.247327 B = 6547.934372 C = 7598.522912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.039 4.039 3 C -0.107 4.107 4 C -0.063 4.063 5 C -0.108 4.108 6 Br -0.039 7.039 7 C -0.035 4.035 8 C -0.124 4.124 9 C -0.131 4.131 10 C 0.559 3.441 11 O -0.588 6.588 12 N -0.593 5.593 13 C 0.081 3.919 14 C 0.223 3.777 15 C -0.537 4.537 16 H 0.029 0.971 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.946 3.054 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.235 1.235 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.179 0.821 27 H 0.168 0.832 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.021 0.979 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 24.722 1.985 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.040 4.040 3 C -0.125 4.125 4 C -0.082 4.082 5 C -0.187 4.187 6 Br 0.047 6.953 7 C -0.038 4.038 8 C -0.181 4.181 9 C -0.135 4.135 10 C 0.347 3.653 11 O -0.469 6.469 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.101 3.899 15 C -0.575 4.575 16 H 0.048 0.952 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.769 3.231 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.158 1.158 23 H 0.095 0.905 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.197 0.803 27 H 0.186 0.814 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.814 24.247 1.500 24.591 hybrid contribution -0.619 -1.413 -0.253 1.563 sum 3.195 22.834 1.247 23.090 Atomic orbital electron populations 1.20962 0.89356 1.04113 1.03377 1.20285 0.97348 0.91247 0.95108 1.21348 0.93285 0.98002 0.99895 1.21586 0.94577 0.96844 0.95222 1.21673 0.90934 0.95254 1.10862 1.96667 1.01919 1.99012 1.97701 1.19688 0.91992 0.95130 0.96970 1.20953 1.00493 0.93512 1.03156 1.19642 0.93030 0.93268 1.07544 1.18630 0.78566 0.84622 0.83467 1.90736 1.56821 1.66418 1.32917 1.47894 1.55479 1.22391 1.06493 1.21885 1.01251 0.98317 0.84631 1.19428 0.92049 0.80899 0.97560 1.21516 0.93490 0.91231 1.51296 0.95224 1.25836 1.03347 0.95586 0.93775 1.70048 1.36824 0.99743 1.51806 0.85739 0.79293 0.79080 0.79003 1.20236 1.19996 1.15814 0.90503 0.93218 0.86868 0.80341 0.81407 0.90227 0.94357 0.88946 0.89967 0.90851 0.91080 0.92600 0.96084 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.62 71.23 0.69 -1.89 16 2 C -0.04 -0.95 5.91 -19.61 -0.12 -1.06 16 3 C -0.11 -1.79 9.69 22.23 0.22 -1.58 16 4 C -0.06 -1.11 9.78 22.35 0.22 -0.90 16 5 C -0.11 -2.62 6.21 22.27 0.14 -2.48 16 6 Br -0.04 -0.84 31.77 -20.37 -0.65 -1.49 16 7 C -0.04 -1.11 5.50 -19.59 -0.11 -1.22 16 8 C -0.12 -4.38 9.15 71.24 0.65 -3.73 16 9 C -0.13 -4.34 3.91 -20.09 -0.08 -4.42 16 10 C 0.56 24.04 4.05 86.79 0.35 24.39 16 11 O -0.59 -31.20 16.68 -3.90 -0.07 -31.27 16 12 N -0.59 -24.81 2.86 -854.57 -2.44 -27.25 16 13 C 0.08 2.53 10.26 127.77 1.31 3.84 16 14 C 0.22 10.89 4.23 85.63 0.36 11.25 16 15 C -0.54 -31.74 9.94 25.60 0.25 -31.49 16 16 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 17 C 0.01 0.75 5.47 84.66 0.46 1.21 16 18 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 19 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 23 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 24 H 0.05 1.29 7.08 -2.39 -0.02 1.27 16 25 H 0.11 1.44 8.09 -2.38 -0.02 1.42 16 26 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 27 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.04 1.67 7.09 -2.39 -0.02 1.66 16 30 H 0.09 2.86 6.64 -2.39 -0.02 2.84 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.07 2.05 6.56 -2.39 -0.02 2.03 16 34 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 35 H 0.02 1.10 6.85 -2.38 -0.02 1.09 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -77.34 321.62 4.41 -72.94 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.03 Total: 8.62 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.35 Total: -8.08 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.14 Total: -86.90 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.07 Total: -31.27 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -0.65 Total: -1.49 kcal Total: -77.34 4.41 -72.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521342516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.351 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds