Wall clock time and date at job start Tue Mar 31 2020 13:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37991 * 120.06138 * 2 1 4 4 C 1.38326 * 120.15398 * 180.02562 * 3 2 1 5 5 C 1.38470 * 120.28371 * 359.97438 * 4 3 2 6 6 Br 1.89100 * 119.93580 * 180.02562 * 5 4 3 7 7 C 1.38030 * 120.12063 * 0.27954 * 5 4 3 8 8 C 1.50704 * 120.07511 * 179.72471 * 7 5 4 9 9 C 1.39560 * 120.06773 * 180.02562 * 2 1 3 10 10 C 1.47853 * 120.13370 * 0.02562 * 9 2 1 11 11 O 1.21545 * 119.99995 * 90.00380 * 10 9 2 12 12 N 1.34774 * 119.99736 * 269.99505 * 10 9 2 13 13 C 1.46496 * 119.99908 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47087 * 35.00217 * 13 12 10 15 15 C 1.53002 * 109.47417 * 275.00059 * 13 12 10 16 16 C 1.50700 * 109.47193 * 155.00437 * 13 12 10 17 17 H 1.08000 * 119.99862 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00211 * 180.02562 * 16 13 12 19 19 N 1.31509 * 119.99694 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00086 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47234 * 60.00024 * 20 18 16 22 22 H 1.48502 * 109.47139 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47540 * 300.00018 * 20 18 16 24 24 H 1.09005 * 109.46953 * 90.00383 * 1 2 3 25 25 H 1.09002 * 109.46938 * 210.00045 * 1 2 3 26 26 H 1.09003 * 109.47471 * 330.00260 * 1 2 3 27 27 H 1.07999 * 119.92311 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.85537 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47099 * 90.00005 * 8 7 5 30 30 H 1.08996 * 109.46993 * 209.99989 * 8 7 5 31 31 H 1.08998 * 109.47242 * 330.00260 * 8 7 5 32 32 H 0.97007 * 120.00190 * 0.02562 * 12 10 9 33 33 H 1.08994 * 109.47308 * 300.00433 * 15 13 12 34 34 H 1.09001 * 109.46692 * 60.00092 * 15 13 12 35 35 H 1.08997 * 109.47450 * 179.97438 * 15 13 12 36 36 H 0.97006 * 120.00020 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1943 0.0000 4 6 3.5814 1.1965 -0.0005 5 6 4.2816 0.0019 -0.0005 6 35 6.1726 0.0165 -0.0005 7 6 3.6019 -1.1994 -0.0058 8 6 4.3650 -2.4989 -0.0121 9 6 2.2062 -1.2078 -0.0005 10 6 1.4714 -2.4908 -0.0017 11 8 1.1699 -3.0175 -1.0548 12 7 1.1362 -3.0764 1.1650 13 6 0.4087 -4.3479 1.1639 14 1 0.7403 -4.9556 0.3219 15 6 -1.0919 -4.0770 1.0376 16 6 0.6797 -5.0829 2.4514 17 1 1.3292 -4.6466 3.1957 18 6 0.0992 -6.3127 2.6785 19 7 -0.6906 -6.8446 1.7714 20 14 0.4357 -7.2239 4.2740 21 1 -0.0162 -6.3966 5.4214 22 1 -0.3009 -8.5134 4.2725 23 1 1.8922 -7.4867 4.3965 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6579 2.1294 -0.0004 28 1 4.1175 2.1340 -0.0010 29 1 4.5494 -2.8169 1.0140 30 1 3.7814 -3.2605 -0.5292 31 1 5.3163 -2.3592 -0.5256 32 1 1.3767 -2.6559 2.0055 33 1 -1.4235 -3.4693 1.8795 34 1 -1.2879 -3.5454 0.1064 35 1 -1.6331 -5.0230 1.0363 36 1 -1.0993 -7.7097 1.9313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559755260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:41 Heat of formation + Delta-G solvation = -26.360228 kcal Electronic energy + Delta-G solvation = -19702.212578 eV Core-core repulsion = 16617.852980 eV Total energy + Delta-G solvation = -3084.359599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19937 -38.11940 -34.82503 -34.02672 -32.66023 -32.07847 -30.50524 -29.02783 -27.38742 -26.26602 -25.29234 -23.53926 -20.98329 -20.64565 -19.47800 -17.64949 -16.26624 -16.04722 -15.56095 -15.29044 -14.58571 -14.10836 -13.94958 -13.48495 -13.21218 -13.13422 -13.05758 -12.74480 -12.44232 -12.02308 -11.94118 -11.74300 -11.47996 -11.25259 -11.14455 -10.96912 -10.80392 -10.69261 -10.37535 -10.26361 -10.20319 -9.22209 -9.09735 -8.79980 -8.58314 -8.55648 -7.99563 -6.14987 -4.24496 0.95820 1.12104 1.53239 3.23067 3.24751 3.29816 3.31051 3.39275 3.99295 4.34372 4.64374 4.72908 4.80304 5.14204 5.17224 5.26205 5.45238 5.53537 5.60379 5.66477 5.75195 5.77735 6.02577 6.08990 6.22827 6.27910 6.43582 6.68066 6.78096 6.90605 7.09615 7.37129 7.50151 7.65379 7.86430 8.10519 8.57950 8.72661 9.01532 9.42916 10.90926 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.003837 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.513540 B = 7296.054125 C = 8338.691127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.032 4.032 3 C -0.127 4.127 4 C -0.076 4.076 5 C -0.104 4.104 6 Br -0.052 7.052 7 C -0.017 4.017 8 C -0.133 4.133 9 C -0.113 4.113 10 C 0.553 3.447 11 O -0.544 6.544 12 N -0.698 5.698 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.068 3.932 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.015 0.985 35 H 0.091 0.909 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.028 17.133 -2.001 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.146 4.146 4 C -0.096 4.096 5 C -0.183 4.183 6 Br 0.034 6.966 7 C -0.019 4.019 8 C -0.190 4.190 9 C -0.117 4.117 10 C 0.336 3.664 11 O -0.422 6.422 12 N -0.345 5.345 13 C 0.163 3.837 14 H 0.067 0.933 15 C -0.206 4.206 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.520 5.520 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.110 0.890 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.382 16.529 -2.776 19.716 hybrid contribution -0.131 -0.232 1.258 1.285 sum 10.251 16.298 -1.519 19.313 Atomic orbital electron populations 1.20941 0.90201 1.03669 1.03328 1.20069 0.96616 0.91614 0.95032 1.20919 0.93337 0.97667 1.02650 1.21115 0.94229 0.96537 0.97701 1.21534 0.90019 0.95510 1.11276 1.96642 1.03144 1.99076 1.97773 1.19780 0.92254 0.94763 0.95114 1.21097 1.00347 0.93677 1.03833 1.20037 0.92765 0.94643 1.04231 1.18037 0.79414 0.83700 0.85214 1.90776 1.55629 1.64461 1.31375 1.46607 1.56201 1.25186 1.06501 1.18797 0.88085 0.78619 0.98223 0.93255 1.22084 0.99567 1.02263 0.96671 1.21156 1.29944 1.03757 1.02434 0.92090 1.24871 0.94664 0.97020 0.97018 1.69887 1.30471 1.17756 1.33922 0.86508 0.78478 0.78940 0.83174 1.20152 1.21113 1.20156 0.90232 0.90439 0.90898 0.84815 0.84950 0.89704 0.90096 0.90296 0.77719 0.95387 0.96635 0.89035 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.62 36.00 0.35 -1.25 16 2 C -0.03 -0.45 5.91 -104.22 -0.62 -1.06 16 3 C -0.13 -1.43 9.69 -39.64 -0.38 -1.81 16 4 C -0.08 -0.85 9.78 -39.46 -0.39 -1.24 16 5 C -0.10 -1.35 6.22 -39.57 -0.25 -1.60 16 6 Br -0.05 -0.59 31.77 -68.01 -2.16 -2.75 16 7 C -0.02 -0.25 5.92 -104.20 -0.62 -0.87 16 8 C -0.13 -1.97 9.15 36.01 0.33 -1.64 16 9 C -0.11 -1.86 5.63 -104.97 -0.59 -2.45 16 10 C 0.55 11.14 4.16 -12.33 -0.05 11.09 16 11 O -0.54 -13.12 16.76 5.33 0.09 -13.03 16 12 N -0.70 -14.39 5.07 -55.88 -0.28 -14.67 16 13 C 0.26 6.57 2.56 -69.08 -0.18 6.40 16 14 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 15 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 16 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 19 N -0.88 -24.47 11.32 55.43 0.63 -23.85 16 20 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.16 7.08 -51.93 -0.37 0.80 16 26 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.39 7.08 -51.93 -0.37 1.02 16 31 H 0.08 1.03 6.64 -51.93 -0.34 0.69 16 32 H 0.39 7.19 8.53 -40.82 -0.35 6.84 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -29.40 323.50 -8.95 -38.35 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.63 Total: 5.86 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.44 Total: -10.15 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.34 Total: -38.52 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.16 Total: -2.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.40 -8.95 -38.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559755260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.992 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds