Wall clock time and date at job start Tue Mar 31 2020 15:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48504 * 109.46962 * 239.99875 * 3 2 1 5 5 H 1.48500 * 109.47543 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47669 * 120.00019 * 3 2 1 7 7 C 1.37879 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47171 * 180.02562 * 9 7 2 11 11 S 1.81406 * 109.46937 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54513 * 68.37365 * 11 10 9 13 13 O 1.42102 * 110.54191 * 291.62209 * 11 10 9 14 14 N 1.65608 * 104.44741 * 179.97438 * 11 10 9 15 15 C 1.46501 * 120.00079 * 65.00031 * 14 11 10 16 16 C 1.50695 * 109.47096 * 164.99965 * 15 14 11 17 17 C 1.37511 * 119.91043 * 259.72646 * 16 15 14 18 18 C 1.38805 * 120.18688 * 179.72497 * 17 16 15 19 19 C 1.36134 * 120.59366 * 0.55253 * 18 17 16 20 20 C 1.41139 * 120.45165 * 359.72469 * 19 18 17 21 21 C 1.45394 * 129.34606 * 179.97438 * 20 19 18 22 22 C 1.31817 * 114.89537 * 179.97438 * 21 20 19 23 23 S 1.75301 * 111.40679 * 0.02562 * 22 21 20 24 24 C 1.39772 * 118.83163 * 359.97438 * 20 19 18 25 25 H 0.96998 * 119.99506 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.46608 * 59.99842 * 9 7 2 27 27 H 1.09000 * 109.47066 * 300.00382 * 9 7 2 28 28 H 1.09000 * 109.47698 * 60.00057 * 10 9 7 29 29 H 1.09000 * 109.47377 * 300.00116 * 10 9 7 30 30 H 0.97002 * 119.99894 * 244.99520 * 14 11 10 31 31 H 1.09002 * 109.46709 * 284.99775 * 15 14 11 32 32 H 1.09001 * 109.47081 * 44.99820 * 15 14 11 33 33 H 1.07997 * 119.90480 * 359.97438 * 17 16 15 34 34 H 1.07996 * 119.70870 * 180.29360 * 18 17 16 35 35 H 1.07999 * 119.77455 * 179.74673 * 19 18 17 36 36 H 1.08005 * 122.55153 * 0.02694 * 21 20 19 37 37 H 1.07999 * 124.29720 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6620 0.0027 11 16 1.3382 -5.2330 0.0034 12 8 0.6646 -5.4204 -1.2336 13 8 0.6638 -5.4189 1.2403 14 7 2.5204 -6.3927 0.0038 15 6 3.4189 -6.5225 1.1536 16 6 4.1389 -7.8444 1.0819 17 6 3.7071 -8.9027 1.8463 18 6 4.3626 -10.1245 1.7804 19 6 5.4441 -10.2878 0.9699 20 6 5.9129 -9.2173 0.1785 21 6 7.0360 -9.1758 -0.7439 22 6 7.2207 -8.0155 -1.3415 23 16 6.0271 -6.8367 -0.8329 24 6 5.2472 -7.9900 0.2421 25 1 -0.4849 0.8401 -0.0004 26 1 0.6240 -2.5574 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8719 -3.6036 0.8926 29 1 2.8719 -3.6051 -0.8873 30 1 2.6179 -6.9861 -0.7573 31 1 4.1466 -5.7111 1.1394 32 1 2.8388 -6.4742 2.0752 33 1 2.8532 -8.7841 2.4968 34 1 4.0140 -10.9519 2.3806 35 1 5.9465 -11.2430 0.9320 36 1 7.6701 -10.0309 -0.9263 37 1 8.0080 -7.8160 -2.0534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593616089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:37 Heat of formation + Delta-G solvation = -38.723089 kcal Electronic energy + Delta-G solvation = -22138.522109 eV Core-core repulsion = 18712.850680 eV Total energy + Delta-G solvation = -3425.671429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98227 -36.65682 -36.20928 -35.43803 -34.74855 -33.88524 -31.19259 -31.15075 -29.61725 -25.97079 -25.59207 -23.94852 -22.07600 -21.65367 -20.75911 -18.94239 -18.19650 -17.43555 -16.61601 -16.27237 -16.11115 -15.45415 -15.37873 -15.25901 -14.68674 -14.54330 -14.35244 -13.95123 -13.55472 -13.27550 -13.06812 -12.67660 -12.49655 -12.06340 -11.91599 -11.74648 -11.59290 -11.54387 -11.49212 -11.27851 -11.06028 -10.96284 -10.78636 -10.44364 -10.36834 -9.92043 -9.75517 -9.51683 -9.04159 -8.80927 -8.49212 -7.97066 -6.11562 -4.17133 0.43120 0.71706 0.98239 1.29853 1.77776 1.98637 3.12023 3.27963 3.32778 3.34568 3.48466 4.20077 4.28737 4.31998 4.38979 4.58177 4.71833 4.86893 4.95151 5.02558 5.13586 5.21487 5.23616 5.45925 5.49943 5.60945 5.63800 5.68041 5.72965 5.88869 6.06712 6.14511 6.20480 6.49214 6.55244 7.04776 7.30762 7.37017 7.81313 8.18347 8.86053 9.47527 10.99475 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.003237 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.741499 B = 8648.053279 C = 9665.981567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.592 3.408 12 O -0.965 6.965 13 O -0.966 6.966 14 N -1.124 6.124 15 C 0.153 3.847 16 C -0.058 4.058 17 C -0.084 4.084 18 C -0.119 4.119 19 C -0.076 4.076 20 C -0.081 4.081 21 C -0.121 4.121 22 C -0.196 4.196 23 S 0.103 5.897 24 C -0.128 4.128 25 H 0.266 0.734 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.414 0.586 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.754 -20.985 1.306 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.689 3.311 12 O -0.955 6.955 13 O -0.956 6.956 14 N -0.880 5.880 15 C 0.027 3.973 16 C -0.064 4.064 17 C -0.106 4.106 18 C -0.139 4.139 19 C -0.096 4.096 20 C -0.089 4.089 21 C -0.151 4.151 22 C -0.330 4.330 23 S 0.368 5.632 24 C -0.244 4.244 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.247 0.753 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.440 -19.409 1.031 23.630 hybrid contribution 1.518 -0.510 -0.059 1.603 sum 14.958 -19.919 0.972 24.929 Atomic orbital electron populations 1.69946 1.06115 1.27304 1.49507 1.25065 0.94970 0.99522 0.94906 0.86529 0.79492 0.82534 0.78709 1.20081 1.21091 1.20069 1.20969 0.93042 0.89769 1.52235 0.92065 1.18959 0.92675 0.90522 0.98909 1.30448 1.13736 1.17945 1.10163 1.05613 0.74645 0.76604 0.74195 1.93557 1.71511 1.85285 1.45156 1.93537 1.71333 1.85004 1.45698 1.55877 1.52651 1.52423 1.27090 1.20210 0.92747 0.94194 0.90192 1.19206 0.94194 0.96231 0.96811 1.21112 0.99328 0.91951 0.98181 1.20725 0.96029 0.97694 0.99459 1.20720 0.96401 0.97361 0.95151 1.19321 0.96475 0.93649 0.99496 1.20914 0.97934 0.98646 0.97628 1.25166 1.04445 0.97390 1.05979 1.84575 1.24834 1.13024 1.40801 1.22664 1.00807 0.97863 1.03107 0.92475 0.94813 0.94809 0.86282 0.85972 0.75325 0.90831 0.88640 0.84593 0.85215 0.85604 0.83850 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 10 C -0.59 -11.18 6.01 37.15 0.22 -10.95 16 11 S 2.59 46.20 5.46 -107.50 -0.59 45.62 16 12 O -0.96 -20.15 18.08 -57.54 -1.04 -21.19 16 13 O -0.97 -19.73 17.50 -57.54 -1.01 -20.74 16 14 N -1.12 -15.04 5.88 -11.66 -0.07 -15.11 16 15 C 0.15 1.80 6.04 -5.20 -0.03 1.77 16 16 C -0.06 -0.64 5.30 -104.30 -0.55 -1.19 16 17 C -0.08 -0.80 9.64 -39.64 -0.38 -1.18 16 18 C -0.12 -0.96 9.95 -40.13 -0.40 -1.36 16 19 C -0.08 -0.63 10.05 -39.24 -0.39 -1.03 16 20 C -0.08 -0.81 6.04 -105.38 -0.64 -1.44 16 21 C -0.12 -1.01 10.39 -38.63 -0.40 -1.42 16 22 C -0.20 -1.65 11.02 28.84 0.32 -1.34 16 23 S 0.10 1.08 22.81 -107.50 -2.45 -1.38 16 24 C -0.13 -1.42 6.31 -38.42 -0.24 -1.66 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 29 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 30 H 0.41 5.04 8.61 -34.48 -0.30 4.74 16 31 H 0.07 0.79 7.99 -51.93 -0.42 0.38 16 32 H 0.10 1.08 7.54 -51.93 -0.39 0.69 16 33 H 0.14 1.12 8.02 -52.49 -0.42 0.70 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -35.37 347.18 -11.70 -47.08 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.45 Total: 2.44 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -3.05 Total: -32.37 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.67 Total: -40.88 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -2.05 Total: -41.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -3.04 Total: 44.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.37 -11.70 -47.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593616089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.354 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds