Wall clock time and date at job start Tue Mar 31 2020 14:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47084 * 2 1 4 4 C 1.36873 * 119.99758 * 274.09584 * 3 2 1 5 5 H 1.08003 * 119.99511 * 174.59730 * 4 3 2 6 6 C 1.39048 * 120.00285 * 354.59979 * 4 3 2 7 7 N 1.31364 * 119.99654 * 34.64277 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 214.64470 * 6 4 3 9 9 H 1.48495 * 109.47136 * 94.99675 * 8 6 4 10 10 H 1.48503 * 109.46907 * 215.00006 * 8 6 4 11 11 H 1.48503 * 109.47071 * 334.99956 * 8 6 4 12 12 C 1.34773 * 119.99866 * 94.09550 * 3 2 1 13 13 O 1.21597 * 119.99833 * 185.89796 * 12 3 2 14 14 C 1.47730 * 120.00168 * 5.89931 * 12 3 2 15 15 C 1.39651 * 120.14769 * 55.10585 * 14 12 3 16 16 C 1.38003 * 119.83462 * 180.02562 * 15 14 12 17 17 Br 1.89103 * 119.93551 * 180.02562 * 16 15 14 18 18 C 1.38481 * 120.13374 * 359.97438 * 16 15 14 19 19 C 1.38334 * 120.29571 * 0.02562 * 18 16 15 20 20 C 1.50706 * 119.92131 * 179.97438 * 19 18 16 21 21 C 1.37962 * 120.16198 * 0.25460 * 19 18 16 22 22 C 1.50702 * 120.06880 * 179.74370 * 21 19 18 23 23 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46868 * 299.99553 * 1 2 3 25 25 H 1.08995 * 109.46995 * 60.00444 * 1 2 3 26 26 H 1.09001 * 109.47178 * 239.99796 * 2 1 3 27 27 H 1.09005 * 109.47209 * 120.00031 * 2 1 3 28 28 H 0.96999 * 119.99564 * 180.02562 * 7 6 4 29 29 H 1.07999 * 120.07964 * 0.02870 * 15 14 12 30 30 H 1.08006 * 119.85592 * 179.97438 * 18 16 15 31 31 H 1.09000 * 109.46991 * 90.00111 * 20 19 18 32 32 H 1.08998 * 109.47184 * 209.99763 * 20 19 18 33 33 H 1.09003 * 109.46649 * 330.00298 * 20 19 18 34 34 H 1.08998 * 109.46973 * 94.84157 * 22 21 19 35 35 H 1.09002 * 109.47162 * 214.84430 * 22 21 19 36 36 H 1.09002 * 109.46760 * 334.84445 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1666 2.0547 -1.1824 5 1 2.4425 3.0989 -1.1781 6 6 1.9621 1.3945 -2.3889 7 7 1.0438 0.4594 -2.4785 8 14 2.9931 1.8372 -3.8823 9 1 4.1493 0.9103 -3.9781 10 1 2.1633 1.7220 -5.1085 11 1 3.4864 3.2315 -3.7476 12 6 2.3216 1.9888 1.1642 13 8 2.6237 3.1666 1.1747 14 6 2.2869 1.2238 2.4276 15 6 3.0341 0.0513 2.5582 16 6 2.9965 -0.6585 3.7411 17 35 4.0077 -2.2463 3.9214 18 6 2.2206 -0.2099 4.7968 19 6 1.4783 0.9509 4.6733 20 6 0.6363 1.4311 5.8273 21 6 1.5023 1.6669 3.4943 22 6 0.6883 2.9281 3.3600 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.9014 -0.0014 -3.3201 29 1 3.6398 -0.2991 1.7356 30 1 2.1941 -0.7692 5.7204 31 1 1.2289 2.0932 6.4586 32 1 -0.2293 1.9721 5.4451 33 1 0.3005 0.5752 6.4128 34 1 1.3124 3.7901 3.5955 35 1 0.3189 3.0151 2.3382 36 1 -0.1552 2.8911 4.0494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596915827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:19 Heat of formation + Delta-G solvation = 1.745695 kcal Electronic energy + Delta-G solvation = -20236.509092 eV Core-core repulsion = 17153.368258 eV Total energy + Delta-G solvation = -3083.140834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90151 -37.88796 -35.17137 -33.67702 -32.35070 -31.50041 -30.21173 -29.44947 -27.50622 -26.02722 -25.13076 -22.91571 -21.98231 -20.42396 -19.05565 -16.93001 -16.33864 -15.79905 -15.67478 -14.81613 -14.40772 -14.00723 -13.72335 -13.41404 -12.94117 -12.82869 -12.72573 -12.58010 -12.44277 -12.22829 -11.99706 -11.61469 -11.39311 -11.18518 -11.12484 -10.80633 -10.69926 -10.39780 -10.36263 -10.23160 -10.18099 -9.86507 -8.84602 -8.60206 -8.31890 -8.21850 -7.92164 -6.56132 -3.79314 1.28515 1.40934 1.76747 3.08861 3.22964 3.28083 3.55354 3.95936 4.09654 4.72760 4.83618 4.96566 5.12344 5.21844 5.25015 5.41610 5.57721 5.61111 5.80719 5.93340 6.02176 6.07096 6.13427 6.18695 6.35291 6.45401 6.51697 6.54428 6.62547 6.77279 6.86340 7.04667 7.18626 7.37862 7.69297 8.01348 8.41178 9.08009 9.32989 9.91661 10.44259 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.005141 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.942542 B = 5445.584722 C = 6643.594684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.108 3.892 3 N -0.421 5.421 4 C -0.317 4.317 5 H 0.110 0.890 6 C 0.042 3.958 7 N -0.841 5.841 8 Si 0.910 3.090 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.466 3.534 13 O -0.587 6.587 14 C -0.072 4.072 15 C -0.072 4.072 16 C -0.095 4.095 17 Br -0.063 7.063 18 C -0.092 4.092 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.036 4.036 22 C -0.114 4.114 23 H 0.037 0.963 24 H 0.021 0.979 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.270 0.730 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -6.543 13.092 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 N -0.137 5.137 4 C -0.444 4.444 5 H 0.128 0.872 6 C -0.164 4.164 7 N -0.478 5.478 8 Si 0.735 3.265 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.255 3.745 13 O -0.474 6.474 14 C -0.077 4.077 15 C -0.093 4.093 16 C -0.174 4.174 17 Br 0.022 6.978 18 C -0.112 4.112 19 C -0.092 4.092 20 C -0.169 4.169 21 C -0.038 4.038 22 C -0.170 4.170 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.643 -6.713 12.961 14.610 hybrid contribution 0.226 0.146 -0.885 0.925 sum 0.869 -6.567 12.075 13.773 Atomic orbital electron populations 1.22073 0.96274 0.99873 1.02087 1.21776 0.95121 0.83590 1.01014 1.43853 1.53134 1.11736 1.05025 1.19723 1.45410 0.97736 0.81504 0.87213 1.25240 0.95608 0.96433 0.99122 1.70233 1.25036 1.25287 1.27196 0.86182 0.80518 0.79643 0.80133 1.20217 1.21078 1.19089 1.17519 0.87329 0.87108 0.82513 1.90619 1.55531 1.15403 1.85844 1.20166 0.97015 0.94441 0.96068 1.21227 0.98546 0.93506 0.95981 1.21513 1.02806 0.95474 0.97621 1.96636 1.71314 1.31643 1.98229 1.20870 0.96412 0.96377 0.97530 1.19597 0.99087 0.95085 0.95382 1.20830 0.99029 1.01467 0.95558 1.19897 0.95651 0.96403 0.91831 1.20863 0.98422 0.94483 1.03248 0.94396 0.95939 0.88604 0.88709 0.93621 0.91930 0.84798 0.85429 0.91098 0.90801 0.91665 0.90332 0.90766 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.69 37.16 0.36 -2.74 16 2 C 0.11 2.42 5.22 -4.04 -0.02 2.40 16 3 N -0.42 -10.57 2.62 -115.92 -0.30 -10.88 16 4 C -0.32 -8.53 9.37 -15.00 -0.14 -8.67 16 5 H 0.11 3.15 7.36 -52.48 -0.39 2.77 16 6 C 0.04 1.05 4.88 -17.45 -0.09 0.97 16 7 N -0.84 -20.68 8.56 55.50 0.47 -20.20 16 8 Si 0.91 19.77 29.67 -169.99 -5.04 14.72 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 12 C 0.47 11.45 6.02 -12.38 -0.07 11.38 16 13 O -0.59 -16.21 15.84 5.28 0.08 -16.13 16 14 C -0.07 -1.47 4.90 -104.97 -0.51 -1.99 16 15 C -0.07 -1.31 7.23 -39.14 -0.28 -1.60 16 16 C -0.10 -1.49 6.22 -39.58 -0.25 -1.74 16 17 Br -0.06 -0.86 33.69 -68.01 -2.29 -3.15 16 18 C -0.09 -1.30 9.43 -39.46 -0.37 -1.67 16 19 C -0.09 -1.31 5.87 -104.69 -0.61 -1.93 16 20 C -0.11 -1.20 9.60 36.01 0.35 -0.85 16 21 C -0.04 -0.64 5.91 -104.20 -0.62 -1.26 16 22 C -0.11 -1.89 8.69 36.01 0.31 -1.58 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.10 2.30 6.20 -51.93 -0.32 1.97 16 26 H 0.09 2.25 5.96 -51.93 -0.31 1.94 16 27 H 0.05 0.93 4.45 -51.93 -0.23 0.70 16 28 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 29 H 0.13 2.47 7.59 -52.49 -0.40 2.07 16 30 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.75 5.87 -51.93 -0.31 0.44 16 33 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.43 7.19 -51.93 -0.37 1.06 16 36 H 0.06 0.85 5.76 -51.93 -0.30 0.55 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -28.24 312.12 -8.62 -36.86 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.29 Total: 3.36 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.95 Total: -9.28 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.17 Total: -31.08 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.08 Total: -16.13 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.04 Total: 14.72 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.24 -8.62 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596915827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.606 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds