Wall clock time and date at job start Tue Mar 31 2020 14:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47084 * 2 1 4 4 C 1.36873 * 119.99758 * 274.09584 * 3 2 1 5 5 H 1.08003 * 119.99511 * 174.59730 * 4 3 2 6 6 C 1.39048 * 120.00285 * 354.59979 * 4 3 2 7 7 N 1.31364 * 119.99654 * 34.64277 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 214.64470 * 6 4 3 9 9 H 1.48495 * 109.47136 * 94.99675 * 8 6 4 10 10 H 1.48503 * 109.46907 * 215.00006 * 8 6 4 11 11 H 1.48503 * 109.47071 * 334.99956 * 8 6 4 12 12 C 1.34773 * 119.99866 * 94.09550 * 3 2 1 13 13 O 1.21597 * 119.99833 * 185.89796 * 12 3 2 14 14 C 1.47730 * 120.00168 * 5.89931 * 12 3 2 15 15 C 1.39651 * 120.14769 * 55.10585 * 14 12 3 16 16 C 1.38003 * 119.83462 * 180.02562 * 15 14 12 17 17 Br 1.89103 * 119.93551 * 180.02562 * 16 15 14 18 18 C 1.38481 * 120.13374 * 359.97438 * 16 15 14 19 19 C 1.38334 * 120.29571 * 0.02562 * 18 16 15 20 20 C 1.50706 * 119.92131 * 179.97438 * 19 18 16 21 21 C 1.37962 * 120.16198 * 0.25460 * 19 18 16 22 22 C 1.50702 * 120.06880 * 179.74370 * 21 19 18 23 23 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46868 * 299.99553 * 1 2 3 25 25 H 1.08995 * 109.46995 * 60.00444 * 1 2 3 26 26 H 1.09001 * 109.47178 * 239.99796 * 2 1 3 27 27 H 1.09005 * 109.47209 * 120.00031 * 2 1 3 28 28 H 0.96999 * 119.99564 * 180.02562 * 7 6 4 29 29 H 1.07999 * 120.07964 * 0.02870 * 15 14 12 30 30 H 1.08006 * 119.85592 * 179.97438 * 18 16 15 31 31 H 1.09000 * 109.46991 * 90.00111 * 20 19 18 32 32 H 1.08998 * 109.47184 * 209.99763 * 20 19 18 33 33 H 1.09003 * 109.46649 * 330.00298 * 20 19 18 34 34 H 1.08998 * 109.46973 * 94.84157 * 22 21 19 35 35 H 1.09002 * 109.47162 * 214.84430 * 22 21 19 36 36 H 1.09002 * 109.46760 * 334.84445 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1666 2.0547 -1.1824 5 1 2.4425 3.0989 -1.1781 6 6 1.9621 1.3945 -2.3889 7 7 1.0438 0.4594 -2.4785 8 14 2.9931 1.8372 -3.8823 9 1 4.1493 0.9103 -3.9781 10 1 2.1633 1.7220 -5.1085 11 1 3.4864 3.2315 -3.7476 12 6 2.3216 1.9888 1.1642 13 8 2.6237 3.1666 1.1747 14 6 2.2869 1.2238 2.4276 15 6 3.0341 0.0513 2.5582 16 6 2.9965 -0.6585 3.7411 17 35 4.0077 -2.2463 3.9214 18 6 2.2206 -0.2099 4.7968 19 6 1.4783 0.9509 4.6733 20 6 0.6363 1.4311 5.8273 21 6 1.5023 1.6669 3.4943 22 6 0.6883 2.9281 3.3600 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.9014 -0.0014 -3.3201 29 1 3.6398 -0.2991 1.7356 30 1 2.1941 -0.7692 5.7204 31 1 1.2289 2.0932 6.4586 32 1 -0.2293 1.9721 5.4451 33 1 0.3005 0.5752 6.4128 34 1 1.3124 3.7901 3.5955 35 1 0.3189 3.0151 2.3382 36 1 -0.1552 2.8911 4.0494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596915827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:18 Heat of formation + Delta-G solvation = -12.660144 kcal Electronic energy + Delta-G solvation = -20237.133776 eV Core-core repulsion = 17153.368258 eV Total energy + Delta-G solvation = -3083.765518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40683 -39.52678 -37.09622 -34.92467 -34.05679 -33.04743 -31.42953 -31.27912 -28.69200 -27.39187 -26.83877 -24.52813 -23.68324 -21.68531 -20.72791 -18.85416 -18.03238 -17.17129 -17.09100 -16.58153 -16.14772 -15.37931 -15.22524 -14.98197 -14.57059 -14.38783 -14.08381 -13.85860 -13.76037 -13.66847 -13.42970 -13.14311 -12.92699 -12.77021 -12.58202 -12.46168 -12.19081 -12.14537 -11.92222 -11.73502 -11.46593 -11.31265 -10.76981 -10.41024 -9.95770 -9.65599 -9.47822 -8.49577 -5.82548 -0.03452 0.11340 0.55829 1.31773 1.41982 1.52654 1.92836 2.22437 2.49898 2.95544 3.02529 3.69938 3.77038 3.88077 4.06849 4.16907 4.33873 4.41120 4.61017 4.66044 4.69655 4.76404 4.81601 4.84682 4.93183 5.05251 5.07500 5.11338 5.22457 5.31963 5.33262 5.41976 5.56392 5.80057 5.84621 6.01801 6.46986 7.11731 7.40920 8.00490 8.50095 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.005141 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.942542 B = 5445.584722 C = 6643.594684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.113 3.887 3 N -0.432 5.432 4 C -0.364 4.364 5 H 0.075 0.925 6 C 0.021 3.979 7 N -0.844 5.844 8 Si 0.971 3.029 9 H -0.269 1.269 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.461 3.539 13 O -0.634 6.634 14 C -0.102 4.102 15 C -0.084 4.084 16 C -0.097 4.097 17 Br -0.039 7.039 18 C -0.078 4.078 19 C -0.078 4.078 20 C -0.112 4.112 21 C -0.052 4.052 22 C -0.108 4.108 23 H 0.063 0.937 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.279 0.721 29 H 0.122 0.878 30 H 0.166 0.834 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 -8.618 15.282 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.009 4.009 3 N -0.147 5.147 4 C -0.491 4.491 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.479 5.479 8 Si 0.795 3.205 9 H -0.194 1.194 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.251 3.749 13 O -0.524 6.524 14 C -0.106 4.106 15 C -0.105 4.105 16 C -0.176 4.176 17 Br 0.047 6.953 18 C -0.097 4.097 19 C -0.079 4.079 20 C -0.168 4.168 21 C -0.053 4.053 22 C -0.164 4.164 23 H 0.082 0.918 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.183 0.817 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.141 -8.831 15.146 17.533 hybrid contribution 0.369 0.724 -1.469 1.679 sum 0.510 -8.106 13.677 15.907 Atomic orbital electron populations 1.21918 0.95504 1.01038 1.00677 1.21772 0.95654 0.82303 1.01174 1.43990 1.53329 1.12571 1.04858 1.19506 1.49057 0.97147 0.83383 0.90676 1.25841 0.95608 0.96357 1.00757 1.70265 1.24389 1.25073 1.28220 0.85289 0.79150 0.78713 0.77396 1.19390 1.19478 1.20357 1.18249 0.85853 0.86956 0.83837 1.90552 1.57254 1.17643 1.86926 1.19885 1.00069 0.95768 0.94905 1.21083 0.98822 0.93467 0.97106 1.21668 1.02937 0.96020 0.96965 1.96662 1.70816 1.29794 1.98059 1.21352 0.94385 0.95891 0.98098 1.20024 0.98540 0.94239 0.95111 1.20959 0.98653 1.02953 0.94260 1.20110 0.95725 0.97055 0.92454 1.20820 0.99560 0.94171 1.01866 0.91771 0.95925 0.91319 0.90218 0.91596 0.91069 0.86023 0.81678 0.89457 0.90215 0.88923 0.91128 0.94642 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 9.69 71.98 0.70 -5.06 16 2 C 0.11 5.20 5.22 86.38 0.45 5.65 16 3 N -0.43 -22.89 2.62 -638.91 -1.68 -24.57 16 4 C -0.36 -20.84 9.37 84.10 0.79 -20.05 16 5 H 0.08 4.71 7.36 -2.91 -0.02 4.69 16 6 C 0.02 1.08 4.88 84.96 0.41 1.49 16 7 N -0.84 -42.03 8.56 21.68 0.19 -41.84 16 8 Si 0.97 41.44 29.67 68.60 2.04 43.48 16 9 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.46 24.02 6.02 86.75 0.52 24.55 16 13 O -0.63 -37.70 15.84 -4.02 -0.06 -37.76 16 14 C -0.10 -4.25 4.90 -20.09 -0.10 -4.34 16 15 C -0.08 -3.06 7.23 22.56 0.16 -2.90 16 16 C -0.10 -2.81 6.22 22.27 0.14 -2.67 16 17 Br -0.04 -0.95 33.69 -20.37 -0.69 -1.63 16 18 C -0.08 -1.89 9.43 22.35 0.21 -1.68 16 19 C -0.08 -2.02 5.87 -19.91 -0.12 -2.13 16 20 C -0.11 -1.85 9.60 71.24 0.68 -1.17 16 21 C -0.05 -1.81 5.91 -19.59 -0.12 -1.92 16 22 C -0.11 -3.62 8.69 71.24 0.62 -3.00 16 23 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 3.36 6.20 -2.39 -0.01 3.34 16 26 H 0.08 3.86 5.96 -2.39 -0.01 3.84 16 27 H 0.07 2.73 4.45 -2.38 -0.01 2.71 16 28 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 29 H 0.12 4.61 7.59 -2.91 -0.02 4.58 16 30 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.26 5.87 -2.39 -0.01 1.24 16 33 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.03 1.44 7.19 -2.39 -0.02 1.42 16 36 H 0.10 2.55 5.76 -2.39 -0.01 2.54 16 Total: -1.00 -65.78 312.12 5.25 -60.53 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.10 Total: 15.04 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.36 Total: -13.24 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -1.49 Total: -66.41 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.06 Total: -37.76 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.04 Total: 43.48 kcal Atomic # 35 Polarization: -0.95 SS G_CDS: -0.69 Total: -1.63 kcal Total: -65.78 5.25 -60.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596915827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.871 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds