Wall clock time and date at job start Tue Mar 31 2020 14:54:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35914 * 117.00423 * 2 1
4 4 C 1.38724 * 120.05445 * 359.97438 * 3 2 1
5 5 C 1.38145 * 119.95022 * 180.02562 * 4 3 2
6 6 C 1.38280 * 120.07395 * 0.02562 * 5 4 3
7 7 C 1.50702 * 119.93778 * 179.97438 * 6 5 4
8 8 N 1.46902 * 109.47215 * 90.00326 * 7 6 5
9 9 C 1.47961 * 111.00005 * 169.99576 * 8 7 6
10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7
11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8
12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9
13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9
14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10
16 16 H 1.48501 * 109.47293 * 359.97438 * 15 13 11
17 17 H 1.48498 * 109.47387 * 119.99775 * 15 13 11
18 18 H 1.48498 * 109.47096 * 240.00236 * 15 13 11
19 19 C 1.48296 * 111.00409 * 269.34877 * 8 7 6
20 20 C 1.38240 * 120.11838 * 0.25790 * 6 5 4
21 21 C 1.38244 * 120.04278 * 359.48824 * 20 6 5
22 22 Br 1.89105 * 120.03343 * 180.25277 * 21 20 6
23 23 H 1.09004 * 109.47351 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.47134 * 300.00054 * 1 2 3
25 25 H 1.09002 * 109.47515 * 59.99915 * 1 2 3
26 26 H 1.07996 * 120.02352 * 0.05159 * 4 3 2
27 27 H 1.08001 * 119.96250 * 180.02562 * 5 4 3
28 28 H 1.09001 * 109.47251 * 329.99902 * 7 6 5
29 29 H 1.09004 * 109.46551 * 210.00268 * 7 6 5
30 30 H 1.09007 * 113.75652 * 23.26342 * 9 8 7
31 31 H 1.08993 * 113.76177 * 251.90248 * 9 8 7
32 32 H 1.09002 * 113.73279 * 90.64057 * 10 9 8
33 33 H 0.96995 * 120.00309 * 180.02562 * 14 13 11
34 34 H 1.09001 * 113.86054 * 108.14174 * 19 8 7
35 35 H 1.09000 * 113.76062 * 336.68481 * 19 8 7
36 36 H 1.08001 * 119.97747 * 179.74689 * 20 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2110 0.0000
4 6 1.2917 2.3752 -0.0005
5 6 1.9212 3.6049 -0.0011
6 6 3.3022 3.6764 -0.0016
7 6 3.9857 5.0195 -0.0028
8 7 4.2084 5.4568 1.3818
9 6 5.0841 6.6486 1.4272
10 6 4.1175 7.1909 2.4954
11 6 3.7981 8.6552 2.3370
12 1 4.2619 9.2266 1.5466
13 6 2.9138 9.2652 3.2012
14 7 2.3495 8.5696 4.1641
15 14 2.5185 11.0804 3.0053
16 1 3.2799 11.6317 1.8557
17 1 1.0632 11.2465 2.7611
18 1 2.8986 11.8063 4.2438
19 6 3.0619 6.2562 1.8777
20 6 4.0568 2.5181 -0.0070
21 6 3.4319 1.2850 -0.0012
22 35 4.4645 -0.2993 -0.0013
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 0.2132 2.3202 -0.0001
27 1 1.3341 4.5114 -0.0011
28 1 3.3572 5.7466 -0.5169
29 1 4.9435 4.9392 -0.5170
30 1 5.0869 7.2269 0.5031
31 1 6.0858 6.4434 1.8048
32 1 4.3963 6.9248 3.5150
33 1 1.7272 8.9987 4.7718
34 1 2.4490 5.7378 2.6151
35 1 2.4745 6.7200 1.0853
36 1 5.1352 2.5767 -0.0115
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597191424.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:54:07
Heat of formation + Delta-G solvation = 23.805196 kcal
Electronic energy + Delta-G solvation = -19069.993820 eV
Core-core repulsion = 15987.809557 eV
Total energy + Delta-G solvation = -3082.184263 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.28627 -38.84421 -37.39483 -33.00322 -32.36016 -31.40860 -29.37623 -28.55447
-27.25513 -25.35032 -24.92351 -22.67668 -22.46653 -20.67216 -18.60607 -18.23386
-16.67593 -16.43869 -15.92991 -15.37000 -14.92500 -14.56077 -14.23809 -14.15368
-13.88668 -13.56786 -13.02322 -12.99580 -12.14245 -12.08344 -11.93701 -11.59127
-11.24775 -11.11867 -10.99628 -10.93829 -10.77795 -10.56838 -10.30965 -10.17226
-9.77045 -9.25868 -9.03924 -8.81359 -8.48933 -8.07344 -7.90453 -6.07727
-4.12550 1.13927 1.34173 1.70496 3.08190 3.25284 3.34009 3.37224
3.60471 4.37954 4.67958 4.74518 4.86936 4.96622 5.07263 5.14369
5.23341 5.29801 5.30763 5.37060 5.56902 5.81048 5.90246 6.03847
6.11047 6.21043 6.35961 6.43748 6.60013 6.62581 6.66817 6.76272
7.12355 7.15908 7.20237 7.70773 7.88140 8.04085 8.33959 8.90442
9.52698 11.01609
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.024311 B = 0.002966 C = 0.002751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1151.467804 B = 9439.579714 C =10174.365294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.307 6.307
3 C 0.143 3.857
4 C -0.202 4.202
5 C -0.054 4.054
6 C -0.088 4.088
7 C 0.060 3.940
8 N -0.486 5.486
9 C -0.002 4.002
10 C 0.038 3.962
11 C -0.518 4.518
12 H 0.058 0.942
13 C 0.066 3.934
14 N -0.886 5.886
15 Si 0.889 3.111
16 H -0.273 1.273
17 H -0.284 1.284
18 H -0.283 1.283
19 C 0.015 3.985
20 C -0.038 4.038
21 C -0.124 4.124
22 Br -0.048 7.048
23 H 0.100 0.900
24 H 0.057 0.943
25 H 0.056 0.944
26 H 0.134 0.866
27 H 0.130 0.870
28 H 0.050 0.950
29 H 0.072 0.928
30 H 0.055 0.945
31 H 0.066 0.934
32 H 0.059 0.941
33 H 0.261 0.739
34 H 0.066 0.934
35 H 0.054 0.946
36 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.505 -17.892 -10.621 20.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.220 6.220
3 C 0.096 3.904
4 C -0.221 4.221
5 C -0.073 4.073
6 C -0.089 4.089
7 C -0.069 4.069
8 N -0.208 5.208
9 C -0.131 4.131
10 C 0.019 3.981
11 C -0.557 4.557
12 H 0.076 0.924
13 C -0.136 4.136
14 N -0.523 5.523
15 Si 0.717 3.283
16 H -0.197 1.197
17 H -0.210 1.210
18 H -0.209 1.209
19 C -0.114 4.114
20 C -0.059 4.059
21 C -0.204 4.204
22 Br 0.037 6.963
23 H 0.118 0.882
24 H 0.076 0.924
25 H 0.074 0.926
26 H 0.151 0.849
27 H 0.148 0.852
28 H 0.068 0.932
29 H 0.091 0.909
30 H 0.074 0.926
31 H 0.085 0.915
32 H 0.077 0.923
33 H 0.071 0.929
34 H 0.085 0.915
35 H 0.072 0.928
36 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -0.968 -19.276 -10.148 21.805
hybrid contribution -1.168 2.120 -0.533 2.478
sum -2.136 -17.156 -10.681 20.322
Atomic orbital electron populations
1.23084 0.78287 1.03968 1.01545 1.86150 1.21345 1.26128 1.88389
1.18550 0.90675 0.84904 0.96295 1.21157 1.00003 0.91710 1.09251
1.21046 0.94279 0.97256 0.94731 1.19771 0.93180 0.95086 1.00893
1.21554 0.99179 0.92233 0.93884 1.68629 1.09878 1.27050 1.15289
1.24085 0.97863 0.90571 1.00535 1.20309 0.89506 0.93966 0.94293
1.21136 1.25827 0.94186 1.14525 0.92398 1.25009 0.95916 0.97859
0.94840 1.69975 1.29256 1.35968 1.17125 0.86583 0.78093 0.85493
0.78116 1.19732 1.21025 1.20911 1.24168 0.94305 0.94305 0.98614
1.20825 1.00292 0.89225 0.95526 1.20934 0.90985 0.92847 1.15613
1.96632 1.69580 1.32174 1.97948 0.88174 0.92413 0.92582 0.84873
0.85179 0.93159 0.90942 0.92625 0.91514 0.92327 0.92935 0.91507
0.92782 0.84533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 9.81 101.05 0.99 1.20 16
2 O -0.31 -3.76 9.83 -19.47 -0.19 -3.96 16
3 C 0.14 1.94 6.68 -39.20 -0.26 1.68 16
4 C -0.20 -2.56 9.04 -39.44 -0.36 -2.92 16
5 C -0.05 -0.76 9.69 -39.60 -0.38 -1.15 16
6 C -0.09 -1.32 5.44 -104.60 -0.57 -1.89 16
7 C 0.06 0.97 4.92 -4.97 -0.02 0.94 16
8 N -0.49 -9.51 6.15 -239.48 -1.47 -10.98 16
9 C 0.00 -0.04 7.50 -2.76 -0.02 -0.06 16
10 C 0.04 0.94 3.60 -90.84 -0.33 0.61 16
11 C -0.52 -13.82 8.77 -34.44 -0.30 -14.12 16
12 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16
13 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16
14 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16
15 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16
16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
19 C 0.01 0.33 7.53 -2.57 -0.02 0.31 16
20 C -0.04 -0.55 9.43 -39.58 -0.37 -0.93 16
21 C -0.12 -1.76 6.24 -39.38 -0.25 -2.00 16
22 Br -0.05 -0.62 33.16 -68.01 -2.26 -2.88 16
23 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16
24 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16
25 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16
26 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16
27 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16
28 H 0.05 0.81 7.33 -51.93 -0.38 0.43 16
29 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16
30 H 0.06 1.09 7.88 -51.92 -0.41 0.69 16
31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
32 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16
33 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16
34 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16
35 H 0.05 1.20 7.43 -51.93 -0.39 0.81 16
36 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16
LS Contribution 324.48 15.07 4.89 4.89
Total: -1.00 -28.91 324.48 -10.10 -39.01
By element:
Atomic # 1 Polarization: 4.07 SS G_CDS: -4.80 Total: -0.73 kcal
Atomic # 6 Polarization: -14.63 SS G_CDS: -1.99 Total: -16.62 kcal
Atomic # 7 Polarization: -34.66 SS G_CDS: -0.74 Total: -35.40 kcal
Atomic # 8 Polarization: -3.76 SS G_CDS: -0.19 Total: -3.96 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal
Atomic # 35 Polarization: -0.62 SS G_CDS: -2.26 Total: -2.88 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -28.91 -10.10 -39.01 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597191424.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.819 kcal
(2) G-P(sol) polarization free energy of solvation -28.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds