Wall clock time and date at job start Tue Mar 31 2020 14:54:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35914 * 117.00423 * 2 1
4 4 C 1.38724 * 120.05445 * 359.97438 * 3 2 1
5 5 C 1.38145 * 119.95022 * 180.02562 * 4 3 2
6 6 C 1.38280 * 120.07395 * 0.02562 * 5 4 3
7 7 C 1.50702 * 119.93778 * 179.97438 * 6 5 4
8 8 N 1.46902 * 109.47215 * 90.00326 * 7 6 5
9 9 C 1.47961 * 111.00005 * 169.99576 * 8 7 6
10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7
11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8
12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9
13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9
14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10
16 16 H 1.48501 * 109.47293 * 359.97438 * 15 13 11
17 17 H 1.48498 * 109.47387 * 119.99775 * 15 13 11
18 18 H 1.48498 * 109.47096 * 240.00236 * 15 13 11
19 19 C 1.48296 * 111.00409 * 269.34877 * 8 7 6
20 20 C 1.38240 * 120.11838 * 0.25790 * 6 5 4
21 21 C 1.38244 * 120.04278 * 359.48824 * 20 6 5
22 22 Br 1.89105 * 120.03343 * 180.25277 * 21 20 6
23 23 H 1.09004 * 109.47351 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.47134 * 300.00054 * 1 2 3
25 25 H 1.09002 * 109.47515 * 59.99915 * 1 2 3
26 26 H 1.07996 * 120.02352 * 0.05159 * 4 3 2
27 27 H 1.08001 * 119.96250 * 180.02562 * 5 4 3
28 28 H 1.09001 * 109.47251 * 329.99902 * 7 6 5
29 29 H 1.09004 * 109.46551 * 210.00268 * 7 6 5
30 30 H 1.09007 * 113.75652 * 23.26342 * 9 8 7
31 31 H 1.08993 * 113.76177 * 251.90248 * 9 8 7
32 32 H 1.09002 * 113.73279 * 90.64057 * 10 9 8
33 33 H 0.96995 * 120.00309 * 180.02562 * 14 13 11
34 34 H 1.09001 * 113.86054 * 108.14174 * 19 8 7
35 35 H 1.09000 * 113.76062 * 336.68481 * 19 8 7
36 36 H 1.08001 * 119.97747 * 179.74689 * 20 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2110 0.0000
4 6 1.2917 2.3752 -0.0005
5 6 1.9212 3.6049 -0.0011
6 6 3.3022 3.6764 -0.0016
7 6 3.9857 5.0195 -0.0028
8 7 4.2084 5.4568 1.3818
9 6 5.0841 6.6486 1.4272
10 6 4.1175 7.1909 2.4954
11 6 3.7981 8.6552 2.3370
12 1 4.2619 9.2266 1.5466
13 6 2.9138 9.2652 3.2012
14 7 2.3495 8.5696 4.1641
15 14 2.5185 11.0804 3.0053
16 1 3.2799 11.6317 1.8557
17 1 1.0632 11.2465 2.7611
18 1 2.8986 11.8063 4.2438
19 6 3.0619 6.2562 1.8777
20 6 4.0568 2.5181 -0.0070
21 6 3.4319 1.2850 -0.0012
22 35 4.4645 -0.2993 -0.0013
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 0.2132 2.3202 -0.0001
27 1 1.3341 4.5114 -0.0011
28 1 3.3572 5.7466 -0.5169
29 1 4.9435 4.9392 -0.5170
30 1 5.0869 7.2269 0.5031
31 1 6.0858 6.4434 1.8048
32 1 4.3963 6.9248 3.5150
33 1 1.7272 8.9987 4.7718
34 1 2.4490 5.7378 2.6151
35 1 2.4745 6.7200 1.0853
36 1 5.1352 2.5767 -0.0115
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597191424.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:54:07
Heat of formation + Delta-G solvation = 6.479908 kcal
Electronic energy + Delta-G solvation = -19070.745101 eV
Core-core repulsion = 15987.809557 eV
Total energy + Delta-G solvation = -3082.935544 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 325.042 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.31607 -40.35388 -38.48838 -34.80799 -33.59103 -32.66799 -30.46669 -29.83252
-28.31710 -26.97335 -26.60226 -24.20628 -23.48336 -21.88418 -20.40214 -19.17533
-18.60551 -17.45258 -16.79573 -16.74605 -16.59323 -16.02871 -15.74381 -15.36111
-15.16295 -14.64614 -14.28334 -14.05913 -13.73846 -13.56710 -13.22601 -12.95634
-12.84663 -12.72619 -12.34711 -12.09789 -12.02852 -11.82854 -11.80973 -11.56426
-11.16757 -11.08424 -10.90073 -10.51279 -9.85979 -9.57259 -9.11799 -8.13337
-6.24841 0.08003 0.28142 0.66784 1.42002 1.44623 1.55548 2.24561
2.42988 2.52375 3.16544 3.37727 3.68113 3.81746 3.98756 4.12588
4.25164 4.33529 4.39420 4.39962 4.51478 4.54051 4.62362 4.73980
4.80000 4.81461 4.90364 4.97176 5.02837 5.16729 5.27868 5.41100
5.61195 5.65724 5.66788 5.87561 6.25602 6.31655 6.40488 6.84690
7.43892 8.96124
Molecular weight = 325.04amu
Principal moments of inertia in cm(-1)
A = 0.024311 B = 0.002966 C = 0.002751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1151.467804 B = 9439.579714 C =10174.365294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.320 6.320
3 C 0.142 3.858
4 C -0.199 4.199
5 C -0.062 4.062
6 C -0.105 4.105
7 C 0.063 3.937
8 N -0.485 5.485
9 C 0.013 3.987
10 C 0.017 3.983
11 C -0.531 4.531
12 H 0.060 0.940
13 C 0.015 3.985
14 N -0.922 5.922
15 Si 0.955 3.045
16 H -0.264 1.264
17 H -0.280 1.280
18 H -0.282 1.282
19 C 0.030 3.970
20 C -0.041 4.041
21 C -0.141 4.141
22 Br -0.041 7.041
23 H 0.122 0.878
24 H 0.063 0.937
25 H 0.069 0.931
26 H 0.160 0.840
27 H 0.133 0.867
28 H 0.052 0.948
29 H 0.091 0.909
30 H 0.067 0.933
31 H 0.079 0.921
32 H 0.022 0.978
33 H 0.262 0.738
34 H 0.046 0.954
35 H 0.054 0.946
36 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.980 -18.200 -11.974 21.875
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.233 6.233
3 C 0.094 3.906
4 C -0.218 4.218
5 C -0.081 4.081
6 C -0.107 4.107
7 C -0.065 4.065
8 N -0.208 5.208
9 C -0.115 4.115
10 C -0.002 4.002
11 C -0.569 4.569
12 H 0.078 0.922
13 C -0.184 4.184
14 N -0.561 5.561
15 Si 0.781 3.219
16 H -0.188 1.188
17 H -0.206 1.206
18 H -0.208 1.208
19 C -0.099 4.099
20 C -0.062 4.062
21 C -0.221 4.221
22 Br 0.044 6.956
23 H 0.141 0.859
24 H 0.081 0.919
25 H 0.088 0.912
26 H 0.177 0.823
27 H 0.151 0.849
28 H 0.071 0.929
29 H 0.109 0.891
30 H 0.085 0.915
31 H 0.097 0.903
32 H 0.040 0.960
33 H 0.071 0.929
34 H 0.064 0.936
35 H 0.072 0.928
36 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -1.437 -19.595 -11.517 22.774
hybrid contribution -1.044 2.091 -0.119 2.340
sum -2.481 -17.504 -11.636 21.164
Atomic orbital electron populations
1.23415 0.76092 1.05869 1.02456 1.86144 1.23629 1.25507 1.88015
1.18712 0.90727 0.85683 0.95464 1.21399 1.01332 0.90869 1.08214
1.21188 0.94127 0.98051 0.94766 1.19711 0.93693 0.94640 1.02652
1.21556 1.00450 0.92856 0.91634 1.68548 1.08140 1.26061 1.18043
1.23946 0.97713 0.90502 0.99369 1.20303 0.92404 0.93756 0.93730
1.21474 1.25575 0.95395 1.14449 0.92198 1.25796 0.95881 1.02130
0.94575 1.70100 1.30076 1.37784 1.18091 0.85548 0.77932 0.80268
0.78161 1.18779 1.20608 1.20833 1.23845 0.94176 0.93846 0.98012
1.20897 1.00659 0.89213 0.95404 1.21123 0.91708 0.93176 1.16075
1.96621 1.69398 1.31592 1.97949 0.85941 0.91865 0.91218 0.82291
0.84912 0.92943 0.89104 0.91485 0.90309 0.96013 0.92938 0.93589
0.92775 0.83906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.21 9.81 113.37 1.11 1.33 16
2 O -0.32 -7.23 9.83 -92.58 -0.91 -8.14 16
3 C 0.14 3.63 6.68 22.52 0.15 3.78 16
4 C -0.20 -4.70 9.04 22.36 0.20 -4.50 16
5 C -0.06 -1.68 9.69 22.26 0.22 -1.47 16
6 C -0.11 -3.06 5.44 -19.85 -0.11 -3.17 16
7 C 0.06 1.95 4.92 85.56 0.42 2.37 16
8 N -0.49 -18.72 6.15 -911.59 -5.61 -24.33 16
9 C 0.01 0.52 7.50 86.41 0.65 1.17 16
10 C 0.02 0.86 3.60 -10.89 -0.04 0.82 16
11 C -0.53 -28.43 8.77 25.60 0.22 -28.20 16
12 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16
13 C 0.02 0.84 5.46 84.66 0.46 1.30 16
14 N -0.92 -53.34 13.29 21.45 0.28 -53.05 16
15 Si 0.96 42.45 29.54 68.60 2.03 44.48 16
16 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16
17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16
18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
19 C 0.03 1.36 7.53 86.34 0.65 2.01 16
20 C -0.04 -1.15 9.43 22.27 0.21 -0.94 16
21 C -0.14 -3.84 6.24 22.40 0.14 -3.70 16
22 Br -0.04 -1.00 33.16 -20.37 -0.68 -1.68 16
23 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16
24 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16
25 H 0.07 0.76 7.66 -2.39 -0.02 0.75 16
26 H 0.16 2.80 6.30 -2.91 -0.02 2.78 16
27 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16
28 H 0.05 1.61 7.33 -2.39 -0.02 1.59 16
29 H 0.09 2.47 8.02 -2.39 -0.02 2.45 16
30 H 0.07 2.52 7.88 -2.38 -0.02 2.50 16
31 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16
32 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16
33 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16
34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16
35 H 0.05 2.40 7.43 -2.39 -0.02 2.38 16
36 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16
Total: -1.00 -61.80 324.48 0.48 -61.32
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: 1.07 Total: 10.59 kcal
Atomic # 6 Polarization: -33.49 SS G_CDS: 4.29 Total: -29.20 kcal
Atomic # 7 Polarization: -72.06 SS G_CDS: -5.32 Total: -77.38 kcal
Atomic # 8 Polarization: -7.23 SS G_CDS: -0.91 Total: -8.14 kcal
Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal
Atomic # 35 Polarization: -1.00 SS G_CDS: -0.68 Total: -1.68 kcal
Total: -61.80 0.48 -61.32 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597191424.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.800 kcal
(2) G-P(sol) polarization free energy of solvation -61.803 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.480 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds