Wall clock time and date at job start Tue Mar 31 2020 15:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35913 * 116.99920 * 2 1 4 4 C 1.38752 * 120.04620 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.95186 * 180.02562 * 4 3 2 6 6 C 1.38361 * 120.05011 * 0.02774 * 5 4 3 7 7 Br 1.89102 * 119.95659 * 179.97438 * 6 5 4 8 8 C 1.38325 * 120.09107 * 359.97438 * 6 5 4 9 9 C 1.50704 * 119.97970 * 179.70626 * 8 6 5 10 10 N 1.46897 * 109.46615 * 284.99858 * 9 8 6 11 11 C 1.47482 * 111.00098 * 265.96822 * 10 9 8 12 12 C 1.53509 * 87.93338 * 221.29860 * 11 10 9 13 13 C 1.50700 * 114.34460 * 139.68345 * 12 11 10 14 14 H 1.07999 * 120.00254 * 266.08290 * 13 12 11 15 15 C 1.37875 * 119.99785 * 86.07214 * 13 12 11 16 16 N 1.31513 * 120.00296 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00060 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46790 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47136 * 120.00193 * 17 15 13 20 20 H 1.48499 * 109.47545 * 240.00377 * 17 15 13 21 21 C 1.47476 * 110.99875 * 169.99956 * 10 9 8 22 22 C 1.38170 * 120.04336 * 359.97438 * 8 6 5 23 23 H 1.08997 * 109.47007 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46736 * 300.00256 * 1 2 3 25 25 H 1.08998 * 109.46826 * 59.99651 * 1 2 3 26 26 H 1.07998 * 120.02471 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.97418 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.46964 * 44.99337 * 9 8 6 29 29 H 1.08999 * 109.47141 * 165.00201 * 9 8 6 30 30 H 1.09000 * 113.47585 * 336.06726 * 11 10 9 31 31 H 1.09005 * 113.47566 * 106.53046 * 11 10 9 32 32 H 1.09002 * 114.17149 * 272.37575 * 12 11 10 33 33 H 0.97010 * 120.00140 * 179.97438 * 16 15 13 34 34 H 1.09000 * 113.47734 * 253.46685 * 21 10 9 35 35 H 1.09002 * 113.47816 * 23.87414 * 21 10 9 36 36 H 1.08002 * 120.02118 * 179.97438 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9204 3.6049 -0.0011 6 6 3.3021 3.6762 -0.0017 7 35 4.1606 5.3611 -0.0031 8 6 4.0565 2.5168 -0.0012 9 6 5.5613 2.5974 -0.0085 10 7 6.0247 2.9769 -1.3498 11 6 6.3525 1.7841 -2.1529 12 6 7.5848 2.5394 -2.6701 13 6 8.8270 1.6945 -2.7883 14 1 9.5376 1.6625 -1.9756 15 6 9.0562 0.9622 -3.9338 16 7 8.1911 1.0014 -4.9235 17 14 10.5957 -0.0857 -4.0800 18 1 11.4007 0.0413 -2.8386 19 1 10.2106 -1.5065 -4.2765 20 1 11.3994 0.3743 -5.2409 21 6 7.4642 3.2974 -1.3406 22 6 3.4312 1.2847 0.0004 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.2128 2.3201 -0.0014 27 1 1.3332 4.5113 -0.0011 28 1 5.8886 3.3451 0.7140 29 1 5.9785 1.6266 0.2589 30 1 6.6002 0.9099 -1.5508 31 1 5.6183 1.5679 -2.9290 32 1 7.3953 3.1518 -3.5518 33 1 8.3525 0.4864 -5.7296 34 1 7.6722 4.3638 -1.4284 35 1 8.0084 2.8279 -0.5211 36 1 4.0205 0.3796 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:43 Heat of formation + Delta-G solvation = 27.506955 kcal Electronic energy + Delta-G solvation = -19279.220436 eV Core-core repulsion = 16197.196693 eV Total energy + Delta-G solvation = -3082.023742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28895 -38.95526 -37.47174 -33.02921 -31.99347 -31.72534 -29.48380 -28.15631 -27.19381 -25.53839 -24.69739 -22.86878 -22.37905 -20.70025 -18.56464 -17.85073 -16.57205 -16.47082 -15.88686 -15.76695 -14.87774 -14.66557 -14.32631 -14.06785 -13.94629 -13.44450 -12.91206 -12.88121 -12.13869 -11.96081 -11.85189 -11.61180 -11.49366 -11.13865 -11.06126 -10.92063 -10.58266 -10.29997 -10.16080 -9.85892 -9.68680 -9.32920 -8.92784 -8.76340 -8.41381 -8.07038 -7.93896 -6.03035 -4.07496 1.21800 1.26696 1.94311 3.12092 3.29223 3.37633 3.41017 3.59959 4.42150 4.62796 4.71396 4.89386 4.94436 5.05232 5.08237 5.25500 5.27040 5.34958 5.48469 5.58861 5.88659 5.91140 6.02878 6.13455 6.19812 6.37506 6.39968 6.52144 6.60666 6.73656 6.76181 7.19548 7.22545 7.25386 7.76085 7.93755 8.09993 8.40422 8.96187 9.57538 11.06492 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.004298 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.641378 B = 6512.687961 C = 8195.957504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.139 3.861 4 C -0.212 4.212 5 C -0.055 4.055 6 C -0.107 4.107 7 Br -0.044 7.044 8 C 0.006 3.994 9 C 0.048 3.952 10 N -0.467 5.467 11 C 0.005 3.995 12 C 0.042 3.958 13 C -0.515 4.515 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.001 4.001 22 C -0.141 4.141 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.822 4.239 12.270 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.094 3.906 4 C -0.232 4.232 5 C -0.075 4.075 6 C -0.187 4.187 7 Br 0.042 6.958 8 C 0.004 3.996 9 C -0.081 4.081 10 N -0.189 5.189 11 C -0.124 4.124 12 C 0.023 3.977 13 C -0.553 4.553 14 H 0.076 0.924 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.130 4.130 22 C -0.161 4.161 23 H 0.118 0.882 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.957 5.101 11.884 20.540 hybrid contribution 0.699 -1.575 0.206 1.736 sum -15.259 3.525 12.090 19.784 Atomic orbital electron populations 1.23065 0.78444 1.03944 1.01351 1.86103 1.21350 1.26846 1.88490 1.19031 0.92222 0.84148 0.95245 1.21111 0.99939 0.91823 1.10325 1.20818 0.92431 0.97705 0.96594 1.21503 0.94263 0.91792 1.11162 1.96647 1.80468 1.21046 1.97648 1.19574 0.96237 0.90549 0.93277 1.21762 0.89621 1.00916 0.95766 1.68949 1.17367 1.24982 1.07618 1.24141 0.99997 0.91829 0.96469 1.20085 0.92710 0.93153 0.91778 1.21075 1.05880 1.26858 1.01525 0.92385 1.25012 0.96309 0.96649 0.95598 1.69985 1.35345 1.41033 1.05929 0.86586 0.83396 0.80201 0.78112 1.19721 1.21031 1.20931 1.23985 0.87645 1.00270 1.01101 1.20334 0.91287 0.98088 1.06343 0.88239 0.92682 0.92527 0.85045 0.85062 0.89918 0.92797 0.92887 0.91920 0.91799 0.92958 0.91865 0.92831 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.96 10.50 -19.47 -0.20 -4.16 16 3 C 0.14 1.90 6.69 -39.22 -0.26 1.64 16 4 C -0.21 -2.52 9.04 -39.44 -0.36 -2.88 16 5 C -0.06 -0.70 9.78 -39.58 -0.39 -1.09 16 6 C -0.11 -1.60 6.22 -39.50 -0.25 -1.85 16 7 Br -0.04 -0.64 31.91 -68.01 -2.17 -2.81 16 8 C 0.01 0.10 5.47 -104.61 -0.57 -0.47 16 9 C 0.05 0.82 4.21 -4.98 -0.02 0.79 16 10 N -0.47 -9.38 6.07 -246.11 -1.49 -10.87 16 11 C 0.00 0.10 7.28 -7.55 -0.06 0.05 16 12 C 0.04 1.05 3.76 -91.24 -0.34 0.70 16 13 C -0.52 -13.99 8.83 -34.44 -0.30 -14.29 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -25.67 13.26 55.43 0.74 -24.93 16 17 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.00 -0.03 7.24 -7.55 -0.05 -0.09 16 22 C -0.14 -2.14 9.61 -39.44 -0.38 -2.52 16 23 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.13 1.17 6.30 -52.49 -0.33 0.83 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.08 1.33 7.33 -51.93 -0.38 0.95 16 29 H 0.05 0.91 7.11 -51.93 -0.37 0.54 16 30 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 31 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 36 H 0.14 2.03 8.00 -52.49 -0.42 1.61 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -29.51 322.02 -10.13 -39.65 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.74 Total: -0.74 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.09 Total: -17.04 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.76 Total: -35.81 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.20 Total: -4.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.17 Total: -2.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.51 -10.13 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.153 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds