Wall clock time and date at job start Tue Mar 31 2020 14:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 C 1.38269 * 119.97828 * 120.00228 * 4 2 1 6 6 C 1.38199 * 120.04123 * 180.02562 * 5 4 2 7 7 C 1.38354 * 119.99668 * 359.97227 * 6 5 4 8 8 Cl 1.73598 * 120.01843 * 180.02562 * 7 6 5 9 9 C 1.38443 * 119.96039 * 0.02562 * 7 6 5 10 10 Cl 1.73602 * 120.01865 * 179.97438 * 9 7 6 11 11 C 1.38201 * 119.98158 * 299.73116 * 4 2 1 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.35317 * 125.86585 * 34.71323 * 12 2 1 14 14 C 1.35354 * 106.17176 * 179.90598 * 13 12 2 15 15 C 1.50698 * 126.74927 * 180.12412 * 14 13 12 16 16 C 1.50705 * 109.47088 * 125.29503 * 15 14 13 17 17 H 1.08004 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00386 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47242 * 89.99734 * 20 18 16 22 22 H 1.48498 * 109.47038 * 210.00157 * 20 18 16 23 23 H 1.48499 * 109.46769 * 329.99660 * 20 18 16 24 24 N 1.33769 * 106.49787 * 0.35256 * 14 13 12 25 25 N 1.28638 * 108.88803 * 359.77648 * 24 14 13 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.08005 * 119.97787 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.00456 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00257 * 0.02562 * 11 4 2 32 32 H 1.07995 * 126.91508 * 0.02562 * 13 12 2 33 33 H 1.08997 * 109.47706 * 245.29624 * 15 14 13 34 34 H 1.09003 * 109.47248 * 5.29878 * 15 14 13 35 35 H 0.96997 * 120.00085 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8273 -0.0382 -2.1403 6 6 3.2883 -0.6883 -3.2693 7 6 2.9548 -2.0129 -3.4894 8 17 3.5341 -2.8303 -4.9071 9 6 2.1589 -2.6861 -2.5783 10 17 1.7390 -4.3479 -2.8533 11 6 1.7029 -2.0353 -1.4458 12 7 2.0184 -0.6906 1.1962 13 6 1.4328 -1.7554 1.7915 14 6 2.2122 -2.0700 2.8524 15 6 1.9870 -3.1891 3.8363 16 6 3.2164 -4.0586 3.8980 17 1 4.0750 -3.8240 3.2862 18 6 3.2454 -5.1529 4.7361 19 7 2.2001 -5.4383 5.4814 20 14 4.7695 -6.2304 4.8131 21 1 5.6873 -5.7154 5.8607 22 1 4.3746 -7.6236 5.1421 23 1 5.4580 -6.2086 3.4975 24 7 3.2188 -1.1890 2.8588 25 7 3.0751 -0.3853 1.8648 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.0875 0.9960 -1.9689 30 1 3.9088 -0.1625 -3.9798 31 1 1.0852 -2.5609 -0.7327 32 1 0.5269 -2.2550 1.4813 33 1 1.7879 -2.7709 4.8230 34 1 1.1342 -3.7879 3.5166 35 1 2.2204 -6.2085 6.0708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603212555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:48 Heat of formation + Delta-G solvation = 102.857687 kcal Electronic energy + Delta-G solvation = -22045.672184 eV Core-core repulsion = 18518.512401 eV Total energy + Delta-G solvation = -3527.159782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.65884 -40.01812 -37.17686 -36.79459 -35.61306 -33.43304 -31.57067 -31.33829 -30.91465 -29.44330 -27.59574 -24.90592 -23.52210 -23.23360 -22.56349 -20.63195 -20.17530 -17.90117 -17.01117 -16.60285 -16.20668 -15.86890 -15.38847 -14.59486 -14.55102 -14.31298 -14.24068 -14.03620 -13.39012 -13.00706 -12.79912 -12.40092 -12.24869 -12.15858 -12.07961 -11.77720 -11.64290 -11.57736 -11.30898 -11.12236 -11.00559 -10.72792 -10.65198 -10.11424 -9.71326 -9.52627 -9.34072 -9.28934 -9.04416 -8.44033 -8.14619 -5.98456 -3.98844 0.45061 0.69163 1.52241 1.88341 2.16701 2.60264 3.13322 3.37939 3.41712 3.44725 3.51944 3.99606 4.15003 4.37070 4.52452 4.55019 4.65199 4.80453 4.89123 5.04026 5.24421 5.28716 5.32589 5.38632 5.50148 5.58550 5.65361 5.75899 5.89370 6.06035 6.12206 6.28579 7.09471 7.13484 7.52094 7.61549 7.99522 8.37384 9.04526 9.27451 9.64189 11.12673 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.003878 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.929724 B = 7217.697231 C = 8609.515796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.191 3.809 3 H 0.120 0.880 4 C -0.091 4.091 5 C -0.081 4.081 6 C -0.100 4.100 7 C -0.025 4.025 8 Cl -0.048 7.048 9 C -0.029 4.029 10 Cl -0.041 7.041 11 C -0.075 4.075 12 N -0.300 5.300 13 C -0.083 4.083 14 C 0.039 3.961 15 C 0.092 3.908 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.259 5.259 25 N -0.106 5.106 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.179 0.821 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 11.136 -21.513 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.089 3.911 3 H 0.138 0.862 4 C -0.092 4.092 5 C -0.100 4.100 6 C -0.119 4.119 7 C -0.052 4.052 8 Cl -0.019 7.019 9 C -0.057 4.057 10 Cl -0.012 7.012 11 C -0.094 4.094 12 N -0.096 5.096 13 C -0.231 4.231 14 C -0.098 4.098 15 C 0.053 3.947 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.538 5.538 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.126 5.126 25 N -0.084 5.084 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.196 0.804 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.205 11.744 -21.420 24.787 hybrid contribution -0.092 -1.640 -0.304 1.671 sum -4.297 10.103 -21.724 24.341 Atomic orbital electron populations 1.22220 0.91161 1.04389 1.04231 1.20258 0.95817 0.96323 0.78728 0.86204 1.19943 0.98932 0.94120 0.96239 1.21103 0.95269 1.00774 0.92837 1.21021 1.00361 0.91937 0.98565 1.20864 0.99761 0.93797 0.90824 1.98397 1.87193 1.78828 1.37478 1.20737 1.00760 0.87843 0.96338 1.98416 1.91902 1.14849 1.95991 1.20973 0.99190 0.93961 0.95253 1.47265 1.18755 1.22773 1.20844 1.23223 1.04478 0.95598 0.99798 1.23020 0.90733 0.98302 0.97735 1.17734 0.98055 0.87646 0.91244 1.21029 0.99897 1.09452 1.23756 0.92329 1.24950 0.96304 0.97584 0.95439 1.69943 1.29221 1.28264 1.26360 0.86537 0.83226 0.79469 0.78499 1.20531 1.21272 1.19930 1.75082 1.21490 1.03820 1.12195 1.78215 1.04236 1.22417 1.03490 0.89542 0.90783 0.90387 0.83858 0.83613 0.83661 0.80438 0.94296 0.94567 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.64 37.16 0.32 -0.87 16 2 C 0.19 1.93 3.47 -69.08 -0.24 1.69 16 3 H 0.12 0.99 7.88 -51.93 -0.41 0.59 16 4 C -0.09 -0.91 4.98 -104.62 -0.52 -1.44 16 5 C -0.08 -0.68 9.67 -39.58 -0.38 -1.06 16 6 C -0.10 -0.86 9.83 -39.55 -0.39 -1.25 16 7 C -0.02 -0.26 6.32 -39.46 -0.25 -0.51 16 8 Cl -0.05 -0.49 27.96 -51.86 -1.45 -1.94 16 9 C -0.03 -0.34 6.32 -39.46 -0.25 -0.59 16 10 Cl -0.04 -0.49 27.96 -51.86 -1.45 -1.94 16 11 C -0.07 -0.85 8.62 -39.55 -0.34 -1.19 16 12 N -0.30 -4.69 3.18 -55.89 -0.18 -4.87 16 13 C -0.08 -1.44 9.50 -17.04 -0.16 -1.60 16 14 C 0.04 0.88 6.44 -82.78 -0.53 0.34 16 15 C 0.09 2.38 5.55 -29.03 -0.16 2.22 16 16 C -0.50 -14.50 9.09 -34.44 -0.31 -14.81 16 17 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 20 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 24 N -0.26 -6.07 12.40 33.29 0.41 -5.65 16 25 N -0.11 -2.09 13.17 60.35 0.79 -1.29 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.14 0.81 7.94 -52.48 -0.42 0.40 16 30 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.15 1.66 6.56 -52.49 -0.34 1.31 16 32 H 0.18 2.45 7.10 -52.49 -0.37 2.08 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.93 8.12 -51.93 -0.42 0.50 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -33.56 335.27 -7.95 -41.51 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: -3.53 Total: -4.77 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -3.32 Total: -17.50 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 1.77 Total: -37.67 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.90 Total: -3.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.56 -7.95 -41.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603212555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.371 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds